X-69262971-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069262971
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069262971
    reference: chr 0
allele count: 2
allele frequency: 5.519068381257244e-5
allele num: 36238
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000427523
  ensembl transcript: ENST00000440401
  gene symbol: AWAT2
  hgvsc: ENST00000440401.1:c.229A>G
  hgvsp: ENSP00000427523.1:p.Thr77Ala
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.595A>G
  hgvsp: ENSP00000421172.1:p.Thr199Ala
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.397A>G
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
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  variant carriers: 0
hgvs: p.Thr199Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP

X-69262979-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069262979
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069262979
    reference: chr 0
allele count: 1
allele frequency: 2.551150568906577e-5
allele num: 39198
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.389G>A
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000427523
  ensembl transcript: ENST00000440401
  gene symbol: AWAT2
  hgvsc: ENST00000440401.1:c.221G>A
  hgvsp: ENSP00000427523.1:p.Gly74Asp
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.587G>A
  hgvsp: ENSP00000421172.1:p.Gly196Asp
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Gly196Asp
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

X-69263005-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263005
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263005
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 50374
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.561G>A
  hgvsp: ENST00000276101.3:c.561G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.363G>A
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000427523
  ensembl transcript: ENST00000440401
  gene symbol: AWAT2
  hgvsc: ENST00000440401.1:c.195G>A
  hgvsp: ENST00000440401.1:c.195G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Leu187Leu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

X-69263015-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263015
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263015
    reference: chr 0
allele count: 1
allele frequency: 1.882317509317472e-5
allele num: 53126
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000427523
  ensembl transcript: ENST00000440401
  gene symbol: AWAT2
  hgvsc: ENST00000440401.1:c.185T>C
  hgvsp: ENSP00000427523.1:p.Ile62Thr
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.353T>C
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.551T>C
  hgvsp: ENSP00000421172.1:p.Ile184Thr
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ile184Thr
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

X-69263045-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263045
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263045
    reference: chr 0
allele count: 1
allele frequency: 1.815771793800955e-5
allele num: 55073
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.323A>T
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000427523
  ensembl transcript: ENST00000440401
  gene symbol: AWAT2
  hgvsc: ENST00000440401.1:c.155A>T
  hgvsp: ENSP00000427523.1:p.Lys52Ile
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.521A>T
  hgvsp: ENSP00000421172.1:p.Lys174Ile
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 1630
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 525
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 25428
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys174Ile
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum

X-69263048-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263048
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263048
    reference: chr 0
allele count: 1
allele frequency: 1.823519757836576e-5
allele num: 54839
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000427523
  ensembl transcript: ENST00000440401
  gene symbol: AWAT2
  hgvsc: ENST00000440401.1:c.152A>G
  hgvsp: ENSP00000427523.1:p.His51Arg
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.320A>G
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.518A>G
  hgvsp: ENSP00000421172.1:p.His173Arg
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
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genotype depth: GenotypeDepth
  all individuals: 212
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1629
  bin: 9.75e1
  variant carriers: 0
hgvs: p.His173Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS

X-69263049-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263049
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263049
    reference: chr 0
allele count: 1
allele frequency: 1.833214174411996e-5
allele num: 54549
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.517C>T
  hgvsp: ENSP00000421172.1:p.His173Tyr
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000427523
  ensembl transcript: ENST00000440401
  gene symbol: AWAT2
  hgvsc: ENST00000440401.1:c.151C>T
  hgvsp: ENSP00000427523.1:p.His51Tyr
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.319C>T
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 554
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  variant carriers: 0
hgvs: p.His173Tyr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

X-69263075-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263075
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263075
    reference: chr 0
allele count: 1
allele frequency: 2.029797426216864e-5
allele num: 49266
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.491G>C
  hgvsp: ENSP00000421172.1:p.Arg164Pro
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.293G>C
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000427523
  ensembl transcript: ENST00000440401
  gene symbol: AWAT2
  hgvsc: ENST00000440401.1:c.125G>C
  hgvsp: ENSP00000427523.1:p.Arg42Pro
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 266
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg164Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

X-69263075-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263075
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263075
    reference: chr 0
allele count: 2
allele frequency: 4.059594852433727e-5
allele num: 49266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.293G>A
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000427523
  ensembl transcript: ENST00000440401
  gene symbol: AWAT2
  hgvsc: ENST00000440401.1:c.125G>A
  hgvsp: ENSP00000427523.1:p.Arg42Gln
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.491G>A
  hgvsp: ENSP00000421172.1:p.Arg164Gln
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 275
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg164Gln
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

X-69263100-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263100
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263100
    reference: chr 0
allele count: 1
allele frequency: 2.376934230229849e-5
allele num: 42071
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.275-7C>T
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.473-7C>T
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000427523
  ensembl transcript: ENST00000440401
  gene symbol: AWAT2
  hgvsc: ENST00000440401.1:c.107-7C>T
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
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  variant carriers: 0
hgvs: c.473-7C>T
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

X-69263104-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263104
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263104
    reference: chr 0
allele count: 1
allele frequency: 2.431315341599805e-5
allele num: 41130
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.275-11C>G
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.473-11C>G
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000427523
  ensembl transcript: ENST00000440401
  gene symbol: AWAT2
  hgvsc: ENST00000440401.1:c.107-11C>G
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum

X-69263115-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263115
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263115
    reference: chr 0
allele count: 504
allele frequency: 1.396508728179551e-2
allele num: 36090
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.275-22T>G
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.473-22T>G
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000427523
  ensembl transcript: ENST00000440401
  gene symbol: AWAT2
  hgvsc: ENST00000440401.1:c.107-22T>G
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 194
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 32
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

X-69263128-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263128
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263128
    reference: chr 0
allele count: 1
allele frequency: 2.961646675551607e-5
allele num: 33765
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.275-35T>C
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000427523
  ensembl transcript: ENST00000440401
  gene symbol: AWAT2
  hgvsc: ENST00000440401.1:c.107-35T>C
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.473-35T>C
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

X-69263278-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263278
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263278
    reference: chr 0
allele count: 1
allele frequency: 2.248605864364094e-5
allele num: 44472
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.472+50G>C
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000427523
  ensembl transcript: ENST00000440401
  gene symbol: AWAT2
  hgvsc: ENST00000440401.1:c.106+50G>C
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.274+50G>C
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS

X-69263280-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263280
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263280
    reference: chr 0
allele count: 1
allele frequency: 2.236986332013511e-5
allele num: 44703
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.472+48A>C
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.274+48A>C
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000427523
  ensembl transcript: ENST00000440401
  gene symbol: AWAT2
  hgvsc: ENST00000440401.1:c.106+48A>C
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

X-69263284-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263284
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263284
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 45042
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.472+44C>T
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000427523
  ensembl transcript: ENST00000440401
  gene symbol: AWAT2
  hgvsc: ENST00000440401.1:c.106+44C>T
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.274+44C>T
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 51
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

X-69263290-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263290
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263291
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 45967
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000427523
  ensembl transcript: ENST00000440401
  gene symbol: AWAT2
  hgvsc: ENST00000440401.1:c.106+37dupA
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.274+37dupA
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.472+37dupA
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 77
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

X-69263296-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263296
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263296
    reference: chr 0
allele count: 1
allele frequency: 2.118599182220716e-5
allele num: 47201
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000427523
  ensembl transcript: ENST00000440401
  gene symbol: AWAT2
  hgvsc: ENST00000440401.1:c.106+32A>T
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.274+32A>T
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.472+32A>T
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10073
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP

X-69263297-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263297
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263296
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 47215
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.274+30delA
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000427523
  ensembl transcript: ENST00000440401
  gene symbol: AWAT2
  hgvsc: ENST00000440401.1:c.106+30delA
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.472+30delA
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: CT
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

X-69263303-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263303
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263303
    reference: chr 0
allele count: 4
allele frequency: 8.011376154138877e-5
allele num: 49929
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.472+25G>A
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.274+25G>A
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000427523
  ensembl transcript: ENST00000440401
  gene symbol: AWAT2
  hgvsc: ENST00000440401.1:c.106+25G>A
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 23
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

X-69263320-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263320
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263320
    reference: chr 0
allele count: 2
allele frequency: 3.221234377013272e-5
allele num: 62088
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.472+8G>A
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000427523
  ensembl transcript: ENST00000440401
  gene symbol: AWAT2
  hgvsc: ENST00000440401.1:c.106+8G>A
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.274+8G>A
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 27511
  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 7.25e1
  variant carriers: 0
hgvs: c.472+8G>A
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-69263320-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263320
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263320
    reference: chr 0
allele count: 2
allele frequency: 3.221234377013272e-5
allele num: 62088
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000427523
  ensembl transcript: ENST00000440401
  gene symbol: AWAT2
  hgvsc: ENST00000440401.1:c.106+8G>T
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.274+8G>T
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.472+8G>T
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
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genotype depth: GenotypeDepth
  all individuals: 37
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genotype depth: GenotypeDepth
  all individuals: 130
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 9.75e1
  variant carriers: 2
hgvs: c.472+8G>T
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-69263416-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263416
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263416
    reference: chr 0
allele count: 1
allele frequency: 1.284472017777093e-5
allele num: 77853
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.384C>T
  hgvsp: ENST00000276101.3:c.384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000427523
  ensembl transcript: ENST00000440401
  gene symbol: AWAT2
  hgvsc: ENST00000440401.1:c.18C>T
  hgvsp: ENST00000440401.1:c.18C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.186C>T
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1629
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
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  variant carriers: 1
hgvs: p.Ser128Ser
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

X-69263423-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263423
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263423
    reference: chr 0
allele count: 1
allele frequency: 1.290389181377103e-5
allele num: 77496
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000427523
  ensembl transcript: ENST00000440401
  gene symbol: AWAT2
  hgvsc: ENST00000440401.1:c.11G>C
  hgvsp: ENSP00000427523.1:p.Gly4Ala
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.179G>C
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.377G>C
  hgvsp: ENSP00000421172.1:p.Gly126Ala
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Gly126Ala
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-69263466-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263466
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263466
    reference: chr 0
allele count: 1
allele frequency: 1.344845208316523e-5
allele num: 74358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.136T>C
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.334T>C
  hgvsp: ENSP00000421172.1:p.Phe112Leu
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
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  variant carriers: 0
hgvs: p.Phe112Leu
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 520
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

X-69263469-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263469
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263469
    reference: chr 0
allele count: 2
allele frequency: 2.697089840062572e-5
allele num: 74154
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.331C>A
  hgvsp: ENSP00000421172.1:p.Leu111Ile
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.133C>A
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Leu111Ile
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5820
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

X-69263473-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263473
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263473
    reference: chr 0
allele count: 1
allele frequency: 1.354371233155008e-5
allele num: 73835
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.129T>C
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.327T>C
  hgvsp: ENST00000276101.3:c.327T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7572
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.His109His
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8135
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-69263488-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263488
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263488
    reference: chr 0
allele count: 2
allele frequency: 2.779708130646282e-5
allele num: 71950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.114C>T
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.312C>T
  hgvsp: ENST00000276101.3:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Leu104Leu
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 1.257071024512885e-4
  allele num: 7955
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ

X-69263493-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263493
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263493
    reference: chr 0
allele count: 1
allele frequency: 1.413547438652041e-5
allele num: 70744
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.307A>G
  hgvsp: ENSP00000421172.1:p.Ile103Val
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.109A>G
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Ile103Val
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7651
  num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-69263501-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263501
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263501
    reference: chr 0
allele count: 7
allele frequency: 1.026694045174538e-4
allele num: 68180
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.101G>A
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.299G>A
  hgvsp: ENSP00000421172.1:p.Arg100His
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 939
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg100His
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7355
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS

X-69263502-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263502
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263502
    reference: chr 0
allele count: 8
allele frequency: 1.179993215039013e-4
allele num: 67797
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.100C>T
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.298C>T
  hgvsp: ENSP00000421172.1:p.Arg100Cys
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 211
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hgvs: p.Arg100Cys
num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 1.43143429716576e-4
  allele num: 6986
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

X-69263502-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263502
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263502
    reference: chr 0
allele count: 3
allele frequency: 4.424974556396301e-5
allele num: 67797
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.298C>G
  hgvsp: ENSP00000421172.1:p.Arg100Gly
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.100C>G
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg100Gly
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 37134
  num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

X-69263512-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263512
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263512
    reference: chr 0
allele count: 185
allele frequency: 2.830174246944177e-3
allele num: 65367
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.90C>T
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.288C>T
  hgvsp: ENST00000276101.3:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ile96Ile
num of homozygotes: 2
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5290
  num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP

X-69263514-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263514
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263514
    reference: chr 0
allele count: 380
allele frequency: 5.846963425705097e-3
allele num: 64991
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.286A>G
  hgvsp: ENSP00000421172.1:p.Ile96Val
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.88A>G
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11855
  bin: 1.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ile96Val
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5263
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
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X-69263536-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263536
    reference: chr 0
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    type: ExactPosition
    position: 24069263536
    reference: chr 0
allele count: 1
allele frequency: 1.785618627573523e-5
allele num: 56003
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.70-4G>A
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.268-4G>A
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: c.268-4G>A
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
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  allele num: 2403
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population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
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site quality: MQRankSum
site quality: ClippingRankSum
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site quality: FS
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X-69263541-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263541
    reference: chr 0
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    type: ExactPosition
    position: 24069263541
    reference: chr 0
allele count: 1
allele frequency: 1.853396348809193e-5
allele num: 53955
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.268-9C>T
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.70-9C>T
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: European (Finnish)
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  allele num: 2282
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population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
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X-69263548-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263548
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263548
    reference: chr 0
allele count: 4
allele frequency: 7.913114008190074e-5
allele num: 50549
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.268-16C>T
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.70-16C>T
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: Other
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population: East Asian
population: African
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population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
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site quality: DP
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site quality: MQ

X-69263554-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263554
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263554
    reference: chr 0
allele count: 2
allele frequency: 4.161551426371751e-5
allele num: 48059
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.268-22C>A
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.70-22C>A
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
  type: Population
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  allele frequency: 0.0e0
  allele num: 4029
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

X-69263555-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263555
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263555
    reference: chr 0
allele count: 1
allele frequency: 2.101635072086083e-5
allele num: 47582
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.268-23C>A
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.70-23C>A
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
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  allele num: 3995
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population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
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site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
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X-69263573-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263573
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263573
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 38101
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.268-41T>C
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.70-41T>C
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: European (Non-Finnish)
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  allele num: 21561
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS

X-69263733-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263733
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263733
    reference: chr 0
allele count: 1
allele frequency: 2.970355848630666e-5
allele num: 33666
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.267+43G>A
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.69+43G>A
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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population: European (Non-Finnish)
population: European (Finnish)
population: Other
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population: South Asian
reference allele: C
site quality: MQ
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site quality: ReadPosRankSum
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site quality: QD
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site quality: DP
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site quality: InbreedingCoeff

X-69263734-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263734
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263734
    reference: chr 0
allele count: 1
allele frequency: 2.932465323597548e-5
allele num: 34101
alternate allele: A
annotation: Annotation
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  ensembl protein: ENSP00000421172
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  gene symbol: AWAT2
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  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
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  consequence: non_coding_transcript_variant
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  ensembl gene: ENSG00000147160
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  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.69+42C>T
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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  allele num: 2162
  num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

X-69263734-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263734
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263734
    reference: chr 0
allele count: 1
allele frequency: 2.932465323597548e-5
allele num: 34101
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.267+42C>G
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.69+42C>G
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3362
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

X-69263739-T-TGGACCTGGGCCTGAGTGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263739
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263757
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 34585
alternate allele: TGGACCTGGGCCTGAGTGG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 206
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3943
  num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS

X-69263758-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263758
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263758
    reference: chr 0
allele count: 537
allele frequency: 1.444286060084452e-2
allele num: 37181
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.69+18C>T
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.267+18C>T
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 313
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  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 226
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1862
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  variant carriers: 441
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 98
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  variant carriers: 12
num of homozygotes: 16
population: African
  type: Population
  allele count: 6
  allele frequency: 1.363636363636364e-3
  allele num: 4400
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

X-69263761-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263761
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263761
    reference: chr 0
allele count: 1
allele frequency: 2.675370538819626e-5
allele num: 37378
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.267+15G>A
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.69+15G>A
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 28138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1176
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 20832
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-69263765-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263765
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263765
    reference: chr 0
allele count: 1
allele frequency: 2.614105714435092e-5
allele num: 38254
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.69+11C>G
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.267+11C>G
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4085
  num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
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site quality: QD
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site quality: VQSLOD
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X-69263769-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263769
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263769
    reference: chr 0
allele count: 2
allele frequency: 5.103212472251282e-5
allele num: 39191
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.267+7A>G
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.69+7A>G
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: c.267+7A>G
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1179
  num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
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X-69263788-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263788
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263788
    reference: chr 0
allele count: 1
allele frequency: 2.44307632170429e-5
allele num: 40932
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.57T>C
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.255T>C
  hgvsp: ENST00000276101.3:c.255T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Tyr85Tyr
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 300
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD

X-69263793-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263793
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263793
    reference: chr 0
allele count: 173
allele frequency: 4.233555207517619e-3
allele num: 40864
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.52G>A
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.250G>A
  hgvsp: ENSP00000421172.1:p.Asp84Asn
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Asp84Asn
num of homozygotes: 1
population: African
  type: Population
  allele count: 154
  allele frequency: 3.249630723781388e-2
  allele num: 4739
  num of homozygotes: 1
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
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site quality: DP

X-69263813-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263813
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263813
    reference: chr 0
allele count: 1
allele frequency: 2.604166666666667e-5
allele num: 38400
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.230G>A
  hgvsp: ENSP00000421172.1:p.Arg77His
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.32G>A
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg77His
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 278
  num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
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site quality: FS
site quality: MQ

X-69263814-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263814
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263814
    reference: chr 0
allele count: 1
allele frequency: 2.614105714435092e-5
allele num: 38254
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.31C>T
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.229C>T
  hgvsp: ENSP00000421172.1:p.Arg77Cys
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg77Cys
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4451
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
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site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
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site quality: DP
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X-69263814-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263814
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263814
    reference: chr 0
allele count: 1
allele frequency: 2.614105714435092e-5
allele num: 38254
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.229C>A
  hgvsp: ENSP00000421172.1:p.Arg77Ser
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.31C>A
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Arg77Ser
num of homozygotes: 0
population: African
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  allele num: 4451
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population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
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site quality: FS
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site quality: QD
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X-69263818-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263818
    reference: chr 0
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    type: ExactPosition
    position: 24069263818
    reference: chr 0
allele count: 2
allele frequency: 5.304336294921098e-5
allele num: 37705
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.27C>T
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.225C>T
  hgvsp: ENST00000276101.3:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.His75His
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population: East Asian
  type: Population
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  allele num: 2508
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population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
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X-69263830-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263830
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263830
    reference: chr 0
allele count: 2
allele frequency: 5.725409366769724e-5
allele num: 34932
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
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  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.15C>T
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.213C>T
  hgvsp: ENST00000276101.3:c.213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Thr71Thr
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 5.227391531625719e-5
  allele num: 19130
  num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
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X-69263837-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263837
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263837
    reference: chr 0
allele count: 1
allele frequency: 3.163856107824216e-5
allele num: 31607
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.206G>A
  hgvsp: ENSP00000421172.1:p.Arg69Gln
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.8G>A
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Arg69Gln
num of homozygotes: 0
population: European (Finnish)
  type: Population
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  allele num: 761
  num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
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site quality: MQRankSum
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X-69263840-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263840
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263840
    reference: chr 0
allele count: 1
allele frequency: 3.240125716877815e-5
allele num: 30863
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.203G>A
  hgvsp: ENSP00000421172.1:p.Arg68His
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.5G>A
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: South Asian
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population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
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site quality: VQSLOD
site quality: FS
site quality: MQ
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site quality: QD

X-69263841-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263841
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263841
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 30678
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
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  ensembl gene: ENSG00000147160
  ensembl transcript: ENST00000443056
  gene symbol: AWAT2
  hgvsc: ENST00000443056.1:n.4C>T
  variant of: http://identifiers.org/hgnc/23251
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.202C>T
  hgvsp: ENSP00000421172.1:p.Arg68Cys
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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population: European (Finnish)
population: Other
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population: Latino
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population: East Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
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X-69263845-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263845
    reference: chr 0
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    reference: chr 0
allele count: 4
allele frequency: 1.374192661811186e-4
allele num: 29108
alternate allele: A
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.198C>T
  hgvsp: ENST00000276101.3:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: Other
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population: South Asian
population: East Asian
population: European (Finnish)
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site quality: InbreedingCoeff
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site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

X-69263858-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263858
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263858
    reference: chr 0
allele count: 1
allele frequency: 3.781433163168841e-5
allele num: 26445
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.197-12C>G
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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population: East Asian
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population: South Asian
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population: African
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population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
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X-69263860-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263860
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263860
    reference: chr 0
allele count: 1
allele frequency: 3.952881650723377e-5
allele num: 25298
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.197-14G>A
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
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population: East Asian
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population: South Asian
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  allele num: 3633
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population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
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site quality: VQSLOD

X-69263898-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069263898
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069263898
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 16103
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.197-52C>T
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: Other
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population: European (Non-Finnish)
population: African
population: Latino
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reference allele: G
site quality: VQSLOD
site quality: MQ
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site quality: FS
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X-69264163-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069264163
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069264163
    reference: chr 0
allele count: 1
allele frequency: 1.897029252191069e-5
allele num: 52714
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.196+39T>C
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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site quality: ClippingRankSum
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site quality: InbreedingCoeff
site quality: MQ
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X-69264175-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069264175
    reference: chr 0
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    position: 24069264175
    reference: chr 0
allele count: 1
allele frequency: 1.815376236725061e-5
allele num: 55085
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.196+27C>T
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  allele num: 4575
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population: European (Non-Finnish)
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  allele num: 30662
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population: Latino
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population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
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X-69264181-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069264181
    reference: chr 0
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    type: ExactPosition
    position: 24069264181
    reference: chr 0
allele count: 1
allele frequency: 1.751528208361796e-5
allele num: 57093
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.196+21G>C
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: South Asian
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population: European (Non-Finnish)
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population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
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site quality: DP
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X-69264187-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069264187
    reference: chr 0
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    type: ExactPosition
    position: 24069264188
    reference: chr 0
allele count: 29
allele frequency: 4.839705612389647e-4
allele num: 59921
alternate allele: CA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.196+14dupT
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: South Asian
population: Latino
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site quality: DP
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site quality: VQSLOD
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site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
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X-69264194-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069264194
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069264194
    reference: chr 0
allele count: 4
allele frequency: 6.315722992389553e-5
allele num: 63334
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.196+8T>A
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: c.196+8T>A
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population: African
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population: Latino
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population: East Asian
population: South Asian
population: Other
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population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
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site quality: QD

X-69264204-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069264204
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069264204
    reference: chr 0
allele count: 6
allele frequency: 8.855696426726492e-5
allele num: 67753
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.194G>A
  hgvsp: ENSP00000421172.1:p.Arg65Gln
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg65Gln
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 1.757469244288225e-4
  allele num: 5690
  num of homozygotes: 0
population: Latino
  type: Population
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  allele frequency: 0.0e0
  allele num: 7611
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
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site quality: DP

X-69264205-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069264205
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069264205
    reference: chr 0
allele count: 1
allele frequency: 1.455434592769401e-5
allele num: 68708
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.193C>T
  hgvsp: ENSP00000421172.1:p.Arg65Ter
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg65Ter
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 37788
  num of homozygotes: 0
population: South Asian
  type: Population
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  allele num: 6586
  num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
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site quality: QD

X-69264241-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069264241
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069264241
    reference: chr 0
allele count: 1
allele frequency: 1.259620350426381e-5
allele num: 79389
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.157C>T
  hgvsp: ENSP00000421172.1:p.Leu53Phe
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Leu53Phe
num of homozygotes: 0
population: European (Finnish)
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  allele frequency: 0.0e0
  allele num: 3880
  num of homozygotes: 0
population: African
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  allele num: 7912
  num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
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site quality: MQ
site quality: QD

X-69264250-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069264250
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069264250
    reference: chr 0
allele count: 19
allele frequency: 2.376306968832858e-4
allele num: 79956
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.148G>T
  hgvsp: ENSP00000421172.1:p.Val50Leu
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Val50Leu
num of homozygotes: 0
population: Latino
  type: Population
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  allele num: 8795
  num of homozygotes: 0
population: Other
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  allele num: 551
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

X-69264250-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069264250
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069264250
    reference: chr 0
allele count: 2
allele frequency: 2.501375756666166e-5
allele num: 79956
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.148G>C
  hgvsp: ENSP00000421172.1:p.Val50Leu
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 319
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Val50Leu
num of homozygotes: 0
population: South Asian
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population: Latino
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population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
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site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
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site quality: MQ
site quality: FS

X-69264253-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069264253
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069264253
    reference: chr 0
allele count: 1
allele frequency: 1.248517385604595e-5
allele num: 80095
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.145A>G
  hgvsp: ENSP00000421172.1:p.Thr49Ala
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Thr49Ala
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8803
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3937
  num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

X-69264254-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069264254
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069264254
    reference: chr 0
allele count: 1
allele frequency: 1.248221284669346e-5
allele num: 80114
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.144C>T
  hgvsp: ENST00000276101.3:c.144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Val48Val
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.26295541977823e-5
  allele num: 44190
  num of homozygotes: 0
population: East Asian
  type: Population
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  allele frequency: 0.0e0
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  num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

X-69264260-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069264260
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069264260
    reference: chr 0
allele count: 1
allele frequency: 1.248642101714386e-5
allele num: 80087
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.138G>T
  hgvsp: ENSP00000421172.1:p.Trp46Cys
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: South Asian
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  allele num: 8284
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population: European (Non-Finnish)
  type: Population
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  allele frequency: 0.0e0
  allele num: 44179
  num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

X-69264264-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069264264
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069264264
    reference: chr 0
allele count: 1
allele frequency: 1.25087561292905e-5
allele num: 79944
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.134A>T
  hgvsp: ENSP00000421172.1:p.Tyr45Phe
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1423
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genotype depth: GenotypeDepth
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hgvs: p.Tyr45Phe
num of homozygotes: 0
population: European (Finnish)
  type: Population
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  allele num: 3913
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population: Other
  type: Population
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  allele frequency: 0.0e0
  allele num: 544
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: FS
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site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

X-69264281-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069264281
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069264281
    reference: chr 0
allele count: 2
allele frequency: 2.561508216037603e-5
allele num: 78079
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.117G>C
  hgvsp: ENST00000276101.3:c.117G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11849
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3025
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu39Leu
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3758
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 532
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

X-69264284-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24069264284
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24069264284
    reference: chr 0
allele count: 4
allele frequency: 5.151585400406975e-5
allele num: 77646
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147160
  ensembl protein: ENSP00000421172
  ensembl transcript: ENST00000276101
  gene symbol: AWAT2
  hgvsc: ENST00000276101.3:c.114C>T
  hgvsp: ENST00000276101.3:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23251
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9294
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12629
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Tyr38Tyr
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 253
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.036376826614157e-4
allele num: 19298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1083
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5182
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.22e-1

QD
type: SiteQuality
SIO_000300: 1.382e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.03e0

VQSLOD
type: SiteQuality
SIO_000300: 7.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.01e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.043e0

DP
type: SiteQuality
SIO_000300: 7.34175e5

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4663
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5527
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3601
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3090
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 4.795243118826125e-5
allele num: 20854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 271
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.595e1

QD
type: SiteQuality
SIO_000300: 2.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.112e0

VQSLOD
type: SiteQuality
SIO_000300: -2.921e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.59e-2

DP
type: SiteQuality
SIO_000300: 7.7035e5

ClippingRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.937e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

MQ
type: SiteQuality
SIO_000300: 4.757e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5349
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27059
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6269
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1670
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.299999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

QD
type: SiteQuality
SIO_000300: 1.644e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.69e-1

DP
type: SiteQuality
SIO_000300: 9.10063e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.422e0

VQSLOD
type: SiteQuality
SIO_000300: 4.65e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 1

African
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allele count: 1
allele frequency: 1.755926251097454e-4
allele num: 5695
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5734
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1813
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 361
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6401
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.08e-1

QD
type: SiteQuality
SIO_000300: 2.716e1

DP
type: SiteQuality
SIO_000300: 9.42654e5

GenotypeQuality
all individuals: 217
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4661
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 367
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1914
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5885
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.354241438298729e-5
allele num: 29813
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6401
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.763e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.399999999999999e-3

FS
type: SiteQuality
SIO_000300: 1.743e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

QD
type: SiteQuality
SIO_000300: 1.146e1

VQSLOD
type: SiteQuality
SIO_000300: -1.308e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

DP
type: SiteQuality
SIO_000300: 9.59923e5

MQRankSum
type: SiteQuality
SIO_000300: 2.22e0

GenotypeQuality
all individuals: 311
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4637
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29705
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 365
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6007
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.576789656259855e-4
allele num: 6342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1901
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5882
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.53602e5

VQSLOD
type: SiteQuality
SIO_000300: 9.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.136e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1078
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1901
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5855
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.383522246658772e-5
allele num: 29555
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5975
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4601
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.18e0

MQRankSum
type: SiteQuality
SIO_000300: -5.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.419e0

DP
type: SiteQuality
SIO_000300: 9.49441e5

QD
type: SiteQuality
SIO_000300: 2.486e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5214
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.704801422643746e-5
allele num: 26992
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5388
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1668
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4164
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.219e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.57e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 2.401536983669548e-4
allele num: 4164
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 1668
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 5514
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.704801422643746e-5
allele num: 26992
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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QD
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 5005
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 4304
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1299
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 4.306817692407081e-5
allele num: 23219
num of homozygotes: 0

East Asian
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allele num: 3566
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4400
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-2

DP
type: SiteQuality
SIO_000300: 6.97402e5

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3489
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.397924179787141e-5
allele num: 22738
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 1222
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 4218
num of homozygotes: 0

African
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Other
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.41e-1

ClippingRankSum
type: SiteQuality
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MQ
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InbreedingCoeff
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SIO_000300: -2.51e-2

VQSLOD
type: SiteQuality
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QD
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DP
type: SiteQuality
SIO_000300: 6.85248e5

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.447e0

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 39

South Asian
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allele frequency: 0.0e0
allele num: 3826
num of homozygotes: 0

Latino
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allele frequency: 1.314751511964239e-3
allele num: 3803
num of homozygotes: 0

European (Finnish)
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allele count: 51
allele frequency: 5.52546045503792e-2
allele num: 923
num of homozygotes: 0

African
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allele count: 131
allele frequency: 3.157387322246324e-2
allele num: 4149
num of homozygotes: 0

Other
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allele count: 8
allele frequency: 3.319502074688797e-2
allele num: 241
num of homozygotes: 0

European (Non-Finnish)
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allele count: 300
allele frequency: 1.504890895410083e-2
allele num: 19935
num of homozygotes: 0

East Asian
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allele count: 9
allele frequency: 2.801120448179272e-3
allele num: 3213
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.839e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.88e-1

MQRankSum
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.64e-2

VQSLOD
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FS
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SIO_000300: 7.3646e1

QD
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SIO_000300: 2.0e0

DP
type: SiteQuality
SIO_000300: 6.72702e5

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 3131
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3022
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1151
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 5.269536807714602e-5
allele num: 18977
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2829
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
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QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -3.59e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.79e-1

VQSLOD
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.766e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5310
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2253
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4826
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 4.086302713305002e-5
allele num: 24472
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.76e-2

DP
type: SiteQuality
SIO_000300: 6.35749e5

QD
type: SiteQuality
SIO_000300: 3.013e1

MQ
type: SiteQuality
SIO_000300: 5.851e1

VQSLOD
type: SiteQuality
SIO_000300: -5.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 3668
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 295
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 24617
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2269
num of homozygotes: 0

African
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allele count: 1
allele frequency: 2.06953642384106e-4
allele num: 4832
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5312
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

QD
type: SiteQuality
SIO_000300: 9.460000000000001e0

MQ
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SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.256e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.76e-2

DP
type: SiteQuality
SIO_000300: 6.4e5

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3698
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4887
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5351
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 295
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2274
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3745
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 24792
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.83e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 6.54196e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.69e-2

QD
type: SiteQuality
SIO_000300: 1.118e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.927e0

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3835
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4990
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 303
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2323
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 25261
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.265e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.48e-2

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.948e1

DP
type: SiteQuality
SIO_000300: 6.94946e5

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.866826495495147e-5
allele num: 25861
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2367
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South Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 5105
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 4.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.532e1

DP
type: SiteQuality
SIO_000300: 7.32791e5

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5636
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3984
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 25902
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2358
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3904
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQ
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VQSLOD
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DP
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QD
type: SiteQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 27347
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 3
allele frequency: 7.085498346717053e-4
allele num: 4234
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East Asian
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allele frequency: 2.424242424242424e-4
allele num: 4125
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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MQRankSum
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QD
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BaseQRankSum
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MQ
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FS
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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East Asian
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African
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European (Non-Finnish)
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allele frequency: 2.940398129906789e-5
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European (Finnish)
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allele frequency: 3.272251308900524e-4
allele num: 3056
num of homozygotes: 0

FS
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VQSLOD
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MQRankSum
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QD
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MQ
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ReadPosRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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African
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South Asian
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Other
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Latino
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European (Non-Finnish)
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allele frequency: 5.880796259813578e-5
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European (Finnish)
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VQSLOD
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DP
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FS
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MQRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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QD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
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Other
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European (Finnish)
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East Asian
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African
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Latino
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European (Non-Finnish)
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allele frequency: 2.348189545860142e-5
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VQSLOD
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FS
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QD
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InbreedingCoeff
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DP
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MQ
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GenotypeQuality
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variant carriers: 0

South Asian
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African
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Latino
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European (Finnish)
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Other
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East Asian
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European (Non-Finnish)
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VQSLOD
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BaseQRankSum
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DP
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FS
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InbreedingCoeff
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MQRankSum
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MQ
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QD
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ReadPosRankSum
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ClippingRankSum
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European (Non-Finnish)
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African
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European (Finnish)
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East Asian
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Latino
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South Asian
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ReadPosRankSum
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DP
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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FS
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QD
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VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.171e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3547
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.94168808064835e-5
allele num: 40472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8069
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7544
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8186
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.118e0

FS
type: SiteQuality
SIO_000300: 5.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.15e-1

QD
type: SiteQuality
SIO_000300: 1.214e1

VQSLOD
type: SiteQuality
SIO_000300: 6.6e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.86e-1

DP
type: SiteQuality
SIO_000300: 1.142148e6

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3537
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8024
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African
type: Population
allele count: 1
allele frequency: 1.328727079457879e-4
allele num: 7526
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 507
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MQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

DP
type: SiteQuality
SIO_000300: 1.139684e6

VQSLOD
type: SiteQuality
SIO_000300: -2.436e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.523e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3375
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 489
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7810
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.545630425374844e-5
allele num: 39283
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DP
type: SiteQuality
SIO_000300: 1.113926e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -8.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.86e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.335e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.33e-1

FS
type: SiteQuality
SIO_000300: 3.928e0

QD
type: SiteQuality
SIO_000300: 1.84e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3280
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7250
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7801
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5624
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.586585965184553e-5
allele num: 38661
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 477
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ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.443e1

QD
type: SiteQuality
SIO_000300: 2.863e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.89e-1

DP
type: SiteQuality
SIO_000300: 1.088289e6

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.67e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37325
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 449
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East Asian
type: Population
allele count: 0
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Latino
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African
type: Population
allele count: 7
allele frequency: 9.965831435079728e-4
allele num: 7024
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3070
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DP
type: SiteQuality
SIO_000300: 1.042961e6

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

QD
type: SiteQuality
SIO_000300: 1.203e1

FS
type: SiteQuality
SIO_000300: 3.411e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3056
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37134
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South Asian
type: Population
allele count: 1
allele frequency: 1.371742112482853e-4
allele num: 7290
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Latino
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allele count: 1
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allele num: 7444
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East Asian
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allele frequency: 9.19793966151582e-4
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Other
type: Population
allele count: 0
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allele num: 451
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VQSLOD
type: SiteQuality
SIO_000300: -1.691e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.146e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

FS
type: SiteQuality
SIO_000300: 1.051e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.77e-1

DP
type: SiteQuality
SIO_000300: 1.034207e6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 451
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7290
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7444
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3056
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 5.518763796909492e-4
allele num: 5436
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 6986
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.77e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.691e0

MQRankSum
type: SiteQuality
SIO_000300: -1.61e-1

FS
type: SiteQuality
SIO_000300: 1.051e0

QD
type: SiteQuality
SIO_000300: 2.146e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

DP
type: SiteQuality
SIO_000300: 1.034207e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.43e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
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Latino
type: Population
allele count: 9
allele frequency: 1.253481894150418e-3
allele num: 7180
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35914
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African
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allele count: 176
allele frequency: 2.610114192495922e-2
allele num: 6743
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South Asian
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.982e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.000000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.479e0

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

QD
type: SiteQuality
SIO_000300: 1.587e1

DP
type: SiteQuality
SIO_000300: 9.92766e5

European (Non-Finnish)
type: Population
allele count: 342
allele frequency: 9.570449139499091e-3
allele num: 35735
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 4
allele frequency: 1.391304347826087e-3
allele num: 2875
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 1.198142878538266e-3
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Latino
type: Population
allele count: 24
allele frequency: 3.357582540570789e-3
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Other
type: Population
allele count: 2
allele frequency: 4.629629629629629e-3
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.505e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.17e0

FS
type: SiteQuality
SIO_000300: 6.14e-1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 9.91633e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.272e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

South Asian
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Other
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allele num: 368
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European (Non-Finnish)
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allele count: 1
allele frequency: 3.223830555466005e-5
allele num: 31019
num of homozygotes: 0

Latino
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East Asian
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African
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.38e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

FS
type: SiteQuality
SIO_000300: 5.525e0

QD
type: SiteQuality
SIO_000300: 1.284e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e-1

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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Other
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African
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allele frequency: 1.737619461337967e-4
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Latino
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 29921
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FS
type: SiteQuality
SIO_000300: 6.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.612e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.47e-2

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

DP
type: SiteQuality
SIO_000300: 7.92889e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.96e-1

East Asian
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allele frequency: 2.35626767200754e-4
allele num: 4244
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African
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European (Finnish)
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Latino
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South Asian
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allele count: 2
allele frequency: 3.982477100756671e-4
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.557326313542741e-5
allele num: 28111
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MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.01e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

FS
type: SiteQuality
SIO_000300: 7.27e0

DP
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -2.153e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

European (Non-Finnish)
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allele count: 2
allele frequency: 7.473003773866905e-5
allele num: 26763
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African
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Other
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allele num: 324
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Latino
type: Population
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allele frequency: 0.0e0
allele num: 4938
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1989
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South Asian
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allele num: 4713
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QD
type: SiteQuality
SIO_000300: 7.07e0

VQSLOD
type: SiteQuality
SIO_000300: -6.523e-1

DP
type: SiteQuality
SIO_000300: 6.95083e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.78e-1

FS
type: SiteQuality
SIO_000300: 1.632e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.29e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.73e-1

South Asian
type: Population
allele count: 0
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African
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Other
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.773442511603336e-5
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Latino
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European (Finnish)
type: Population
allele count: 0
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allele num: 1957
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.37e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
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DP
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SIO_000300: 6.88544e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

European (Finnish)
type: Population
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allele num: 1492
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Latino
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East Asian
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South Asian
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African
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Other
type: Population
allele count: 0
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allele num: 265
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BaseQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -4.534e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.221e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.26e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
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SIO_000300: 5.92217e5

FS
type: SiteQuality
SIO_000300: 0.0e0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.250997689561016e-5
allele num: 19044
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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allele num: 244
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African
type: Population
allele count: 0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3786
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.77e-1

QD
type: SiteQuality
SIO_000300: 1.069e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

DP
type: SiteQuality
SIO_000300: 6.17638e5

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

FS
type: SiteQuality
SIO_000300: 3.231e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.71e-2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4206
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 993
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.196154845414394e-5
allele num: 19245
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 251
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3882
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MQRankSum
type: SiteQuality
SIO_000300: 2.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.71e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

QD
type: SiteQuality
SIO_000300: 1.653e1

DP
type: SiteQuality
SIO_000300: 6.22621e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.37e-2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 993
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.575991756826378e-4
allele num: 3882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2162
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19245
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4206
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 251
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.653e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.71e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.37e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.85e-1

DP
type: SiteQuality
SIO_000300: 6.22621e5

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2204
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4228
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3400
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1017
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 251
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VQSLOD
type: SiteQuality
SIO_000300: 3.81e0

DP
type: SiteQuality
SIO_000300: 6.37649e5

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.36e-2

MQ
type: SiteQuality
SIO_000300: 3.388e1

FS
type: SiteQuality
SIO_000300: 0.0e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2403
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1114
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 2.118145445987291e-3
allele num: 4249
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Other
type: Population
allele count: 4
allele frequency: 1.444043321299639e-2
allele num: 277
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Latino
type: Population
allele count: 464
allele frequency: 1.147946561108362e-1
allele num: 4042
num of homozygotes: 15

European (Non-Finnish)
type: Population
allele count: 54
allele frequency: 2.60919984538075e-3
allele num: 20696
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.04134e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.22e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.479e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1124
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4306
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Latino
type: Population
allele count: 1
allele frequency: 2.510670348983179e-4
allele num: 3983
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4422
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BaseQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.24e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.49e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 7.11951e5

QD
type: SiteQuality
SIO_000300: 2.06e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.11e0

East Asian
type: Population
allele count: 1
allele frequency: 3.976143141153082e-4
allele num: 2515
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4495
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1162
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21223
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.55e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.62e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

QD
type: SiteQuality
SIO_000300: 1.24e1

MQRankSum
type: SiteQuality
SIO_000300: 5.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.3e-1

DP
type: SiteQuality
SIO_000300: 7.35487e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.113e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
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Latino
type: Population
allele count: 1
allele frequency: 2.371354043158644e-4
allele num: 4217
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4575
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.621712806766188e-5
allele num: 21637
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.58e-2

FS
type: SiteQuality
SIO_000300: 2.858e0

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-1

QD
type: SiteQuality
SIO_000300: 1.067e1

DP
type: SiteQuality
SIO_000300: 7.55228e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.109e0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22465
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East Asian
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South Asian
type: Population
allele count: 1
allele frequency: 1.95160031225605e-4
allele num: 5124
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4374
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1227
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.93e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.33e-2

DP
type: SiteQuality
SIO_000300: 7.87424e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.674e-1

East Asian
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allele count: 3
allele frequency: 1.104565537555228e-3
allele num: 2716
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 6.888633754305396e-4
allele num: 4355
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.367003367003367e-3
allele num: 297
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South Asian
type: Population
allele count: 1
allele frequency: 1.936483346243222e-4
allele num: 5164
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1217
num of homozygotes: 0

European (Non-Finnish)
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allele count: 11
allele frequency: 4.915981408652127e-4
allele num: 22376
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QD
type: SiteQuality
SIO_000300: 1.326e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.15e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

DP
type: SiteQuality
SIO_000300: 7.8994e5

East Asian
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allele count: 1
allele frequency: 3.883495145631068e-4
allele num: 2575
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5103
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3945
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 20930
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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VQSLOD
type: SiteQuality
SIO_000300: 3.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1114
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 281
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Latino
type: Population
allele count: 0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2568
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 20837
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.966955153422502e-4
allele num: 5084
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.51e0

FS
type: SiteQuality
SIO_000300: 5.635e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.92e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.93e-1

MQ
type: SiteQuality
SIO_000300: 5.763e1

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.737e1

Latino
type: Population
allele count: 1
allele frequency: 2.551671344730799e-4
allele num: 3919
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20837
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 281
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5084
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.92e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.93e-1

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.763e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.51e0

FS
type: SiteQuality
SIO_000300: 5.635e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

QD
type: SiteQuality
SIO_000300: 1.737e1

VQSLOD
type: SiteQuality
SIO_000300: -1.118e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20561
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 271
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 4.545454545454545e-4
allele num: 4400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1077
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VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.1e-2

QD
type: SiteQuality
SIO_000300: 1.242e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.06e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.461e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.844e0

DP
type: SiteQuality
SIO_000300: 7.33758e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4174
num of homozygotes: 0

Other
type: Population
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allele frequency: 3.90625e-3
allele num: 256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2250
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3373
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4783
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 966
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

QD
type: SiteQuality
SIO_000300: 1.156e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.055e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.21e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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FS
type: SiteQuality
SIO_000300: 4.394e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.51e-1

South Asian
type: Population
allele count: 0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2013
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African
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allele num: 3829
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.345600535296086e-4
allele num: 2989
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17312
num of homozygotes: 0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -7.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.13e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQRankSum
type: SiteQuality
SIO_000300: -1.376e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.376e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.47e-1

DP
type: SiteQuality
SIO_000300: 6.2571e5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 223
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1956
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.90772139185916e-5
allele num: 16927
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.37e-1

DP
type: SiteQuality
SIO_000300: 6.12743e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

VQSLOD
type: SiteQuality
SIO_000300: 7.26e-1

FS
type: SiteQuality
SIO_000300: 6.864e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.25e-2

QD
type: SiteQuality
SIO_000300: 1.108e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 731
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 223
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4349
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2863
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1930
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.572e1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.24e-2

DP
type: SiteQuality
SIO_000300: 6.0778e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.203e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: -1.665e0

MQ
type: SiteQuality
SIO_000300: 5.811e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 203
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15997
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 4.800768122899664e-4
allele num: 4166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1799
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.45e-2

QD
type: SiteQuality
SIO_000300: 1.931e1

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.13e-1

DP
type: SiteQuality
SIO_000300: 5.89817e5

FS
type: SiteQuality
SIO_000300: 3.3e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.93e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.6e0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.814310051107325e-5
allele num: 14675
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 549
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 189
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2239
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.526e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.15e-1

DP
type: SiteQuality
SIO_000300: 5.37702e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.09e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.371e0

MQRankSum
type: SiteQuality
SIO_000300: 2.1e0

QD
type: SiteQuality
SIO_000300: 6.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.15e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3383
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14070
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

DP
type: SiteQuality
SIO_000300: 5.22076e5

BaseQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.39e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.524e0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9166
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2615
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 763
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.655e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 7.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.29e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e0

DP
type: SiteQuality
SIO_000300: 4.24877e5

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5649
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5995
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4372
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.204e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-1

QD
type: SiteQuality
SIO_000300: 1.012e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.19e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.86e-1

DP
type: SiteQuality
SIO_000300: 8.6875e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2509
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4812
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.369e1

VQSLOD
type: SiteQuality
SIO_000300: 3.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.902e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e-1

DP
type: SiteQuality
SIO_000300: 9.48673e5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4759
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2572
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

MQ
type: SiteQuality
SIO_000300: 5.932e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

FS
type: SiteQuality
SIO_000300: 3.625e0

DP
type: SiteQuality
SIO_000300: 9.94801e5

QD
type: SiteQuality
SIO_000300: 1.688e1

VQSLOD
type: SiteQuality
SIO_000300: -1.746e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.193e0

MQRankSum
type: SiteQuality
SIO_000300: 8.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6729
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.528818223513224e-4
allele num: 6541
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 397
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.046482e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-2

QD
type: SiteQuality
SIO_000300: 2.014e1

FS
type: SiteQuality
SIO_000300: 2.955e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.144328422257188e-4
allele num: 34955
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2884
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.105103e6

VQSLOD
type: SiteQuality
SIO_000300: 5.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.922e1

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.073047723797516e-4
allele num: 37277
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3128
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.393728222996516e-4
allele num: 7175
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FS
type: SiteQuality
SIO_000300: 6.36e-1

QD
type: SiteQuality
SIO_000300: 3.407e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.482e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.988e0

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e-1

DP
type: SiteQuality
SIO_000300: 1.186541e6

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7232
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7714
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.73550850399167e-4
allele num: 5762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3164
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.639999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.202626e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.32e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-2

QD
type: SiteQuality
SIO_000300: 1.053e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 545
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8168
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.284983091125126e-5
allele num: 43764
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.693e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.02e-1

FS
type: SiteQuality
SIO_000300: 1.164e0

DP
type: SiteQuality
SIO_000300: 1.391804e6

MQRankSum
type: SiteQuality
SIO_000300: -1.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.456e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 3.9e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3921
num of homozygotes: 0

East Asian
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allele count: 19
allele frequency: 2.96411856474259e-3
allele num: 6410
num of homozygotes: 0

African
type: Population
allele count: 0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8249
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44087
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.619999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.78e-1

FS
type: SiteQuality
SIO_000300: 1.768e0

MQRankSum
type: SiteQuality
SIO_000300: -1.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.658e0

QD
type: SiteQuality
SIO_000300: 1.557e1

DP
type: SiteQuality
SIO_000300: 1.401689e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e-1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.536484678023e-5
allele num: 44087
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3921
num of homozygotes: 0

African
type: Population
allele count: 0
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Other
type: Population
allele count: 0
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allele num: 551
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.658e0

DP
type: SiteQuality
SIO_000300: 1.401689e6

VQSLOD
type: SiteQuality
SIO_000300: 8.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.56e-1

QD
type: SiteQuality
SIO_000300: 1.557e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.619999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 1.768e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 547
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6411
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.263518866429752e-5
allele num: 44179
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 1.12e1

VQSLOD
type: SiteQuality
SIO_000300: 4.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.01e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.92e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

DP
type: SiteQuality
SIO_000300: 1.403392e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8804
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Other
type: Population
allele count: 0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3938
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.363e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

DP
type: SiteQuality
SIO_000300: 1.403384e6

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7947
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3927
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 545
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8795
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.764e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.38e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

DP
type: SiteQuality
SIO_000300: 1.403201e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.41e-1

QD
type: SiteQuality
SIO_000300: 8.32e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8771
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.266956837141821e-5
allele num: 44112
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8257
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7935
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.399355e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.645868661292945e-5
allele num: 43049
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7811
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8027
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.923e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.88e-1

QD
type: SiteQuality
SIO_000300: 2.773e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

DP
type: SiteQuality
SIO_000300: 1.355139e6

VQSLOD
type: SiteQuality
SIO_000300: -1.749e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

FS
type: SiteQuality
SIO_000300: 1.0679e1

MQRankSum
type: SiteQuality
SIO_000300: -1.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0