18-53070676-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070676
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070676
    reference: chr 18
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.297+9G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.132+9G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.675+9G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000348374
  ensembl transcript: ENST00000356073
  gene symbol: TCF4
  hgvsc: ENST00000356073.4:c.369+9G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.381+9G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.159+9G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-22+9G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.369+9G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.369+9G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.297+9G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.231+9G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.369+9G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.159+9G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.369+9G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.297+9G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.297+9G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.369+9G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.297+9G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.297+9G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.369+9G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.297+9G>C
  variant of: http://identifiers.org/hgnc/11634
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum

18-53070677-TCA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070677
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070675
    reference: chr 18
allele count: 3
allele frequency: 2.471413978317461e-5
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.297+6_297+7delTG
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.369+6_369+7delTG
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.243+6_243+7delTG
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000348374
  ensembl transcript: ENST00000356073
  gene symbol: TCF4
  hgvsc: ENST00000356073.4:c.369+6_369+7delTG
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-22+6_-22+7delTG
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.132+6_132+7delTG
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.369+6_369+7delTG
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.159+6_159+7delTG
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454584
  ensembl transcript: ENST00000565908
  gene symbol: TCF4
  hgvsc: ENST00000565908.2:c.297+6_297+7delTG
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.297+6_297+7delTG
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.231+6_231+7delTG
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000566376
  gene symbol: TCF4
  hgvsc: ENST00000566376.2:n.53+6_53+7delTG
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.297+6_297+7delTG
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.297+6_297+7delTG
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.297+6_297+7delTG
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.675+6_675+7delTG
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.369+6_369+7delTG
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.159+6_159+7delTG
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.381+6_381+7delTG
  variant of: http://identifiers.org/hgnc/11634
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.675+6_675+7delTG
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: TCA
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

18-53070698-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070698
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070698
    reference: chr 18
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.218A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.356A>G
  hgvsp: ENSP00000455984.1:p.Gln119Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.356A>G
  hgvsp: ENSP00000456125.1:p.Gln119Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.356A>G
  hgvsp: ENSP00000455450.1:p.Gln119Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000348374
  ensembl transcript: ENST00000356073
  gene symbol: TCF4
  hgvsc: ENST00000356073.4:c.356A>G
  hgvsp: ENSP00000348374.4:p.Gln119Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.284A>G
  hgvsp: ENSP00000440731.1:p.Gln95Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.284A>G
  hgvsp: ENSP00000457113.1:p.Gln95Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-35A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.350A>G
  hgvsp: ENSP00000455418.2:p.Gln117Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-35A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.146A>G
  hgvsp: ENSP00000441562.2:p.Gln49Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.284A>G
  hgvsp: ENSP00000455163.1:p.Gln95Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.146A>G
  hgvsp: ENSP00000455261.1:p.Gln49Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000566376
  gene symbol: TCF4
  hgvsc: ENST00000566376.2:n.40A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.284A>G
  hgvsp: ENSP00000454328.1:p.Gln95Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.284A>G
  hgvsp: ENSP00000456983.1:p.Gln95Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.119A>G
  hgvsp: ENSP00000454866.1:p.Gln40Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.662A>G
  hgvsp: ENSP00000381382.1:p.Gln221Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.284A>G
  hgvsp: ENSP00000445202.1:p.Gln95Arg
  variant of: http://identifiers.org/hgnc/11634
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gln221Arg
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

18-53070705-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070705
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070705
    reference: chr 18
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-42A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.277A>G
  hgvsp: ENSP00000455163.1:p.Asn93Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.349A>G
  hgvsp: ENSP00000457263.1:p.Asn117Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.349A>G
  hgvsp: ENSP00000455450.1:p.Asn117Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.277A>G
  hgvsp: ENSP00000445202.1:p.Asn93Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.349A>G
  hgvsp: ENSP00000346440.3:p.Asn117Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454584
  ensembl transcript: ENST00000565908
  gene symbol: TCF4
  hgvsc: ENST00000565908.2:c.277A>G
  hgvsp: ENSP00000454584.2:p.Asn93Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.277A>G
  hgvsp: ENSP00000455135.1:p.Asn93Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.655A>G
  hgvsp: ENSP00000381382.1:p.Asn219Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.112A>G
  hgvsp: ENSP00000454866.1:p.Asn38Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.277A>G
  hgvsp: ENSP00000440731.1:p.Asn93Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.223A>G
  hgvsp: ENSP00000439656.1:p.Asn75Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-42A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.349A>G
  hgvsp: ENSP00000454366.1:p.Asn117Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.349A>G
  hgvsp: ENSP00000456125.1:p.Asn117Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.277A>G
  hgvsp: ENSP00000457747.2:p.Asn93Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.277A>G
  hgvsp: ENSP00000454352.1:p.Asn93Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000348374
  ensembl transcript: ENST00000356073
  gene symbol: TCF4
  hgvsc: ENST00000356073.4:c.349A>G
  hgvsp: ENSP00000348374.4:p.Asn117Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.349A>G
  hgvsp: ENSP00000457649.1:p.Asn117Asp
  variant of: http://identifiers.org/hgnc/11634
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Asn219Asp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

18-53070713-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070713
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070713
    reference: chr 18
allele count: 11
allele frequency: 9.061254077564335e-5
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.341G>A
  hgvsp: ENSP00000455450.1:p.Arg114Lys
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.269G>A
  hgvsp: ENSP00000455346.1:p.Arg90Lys
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.104G>A
  hgvsp: ENSP00000454866.1:p.Arg35Lys
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.353G>A
  hgvsp: ENSP00000457392.1:p.Arg118Lys
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.215G>A
  hgvsp: ENSP00000439656.1:p.Arg72Lys
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.269G>A
  hgvsp: ENSP00000454328.1:p.Arg90Lys
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.341G>A
  hgvsp: ENSP00000456125.1:p.Arg114Lys
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.269G>A
  hgvsp: ENSP00000455135.1:p.Arg90Lys
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.341G>A
  hgvsp: ENSP00000457649.1:p.Arg114Lys
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.335G>A
  hgvsp: ENSP00000455418.2:p.Arg112Lys
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000348374
  ensembl transcript: ENST00000356073
  gene symbol: TCF4
  hgvsc: ENST00000356073.4:c.341G>A
  hgvsp: ENSP00000348374.4:p.Arg114Lys
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.341G>A
  hgvsp: ENSP00000457263.1:p.Arg114Lys
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.647G>A
  hgvsp: ENSP00000381382.1:p.Arg216Lys
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-50G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.131G>A
  hgvsp: ENSP00000441562.2:p.Arg44Lys
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.131G>A
  hgvsp: ENSP00000455261.1:p.Arg44Lys
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.269G>A
  hgvsp: ENSP00000445202.1:p.Arg90Lys
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.269G>A
  hgvsp: ENSP00000440731.1:p.Arg90Lys
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.269G>A
  hgvsp: ENSP00000455163.1:p.Arg90Lys
  variant of: http://identifiers.org/hgnc/11634
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg216Lys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

18-53070715-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070715
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070715
    reference: chr 18
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.267G>A
  hgvsp: ENST00000568740.1:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.339G>A
  hgvsp: ENST00000567880.1:c.339G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.339G>A
  hgvsp: ENST00000354452.3:c.339G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.333G>A
  hgvsp: ENST00000566286.1:c.333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.351G>A
  hgvsp: ENST00000568169.1:c.351G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.267G>A
  hgvsp: ENST00000540999.1:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.102G>A
  hgvsp: ENST00000562847.1:c.102G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.267G>A
  hgvsp: ENST00000568673.1:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.339G>A
  hgvsp: ENST00000562543.1:c.339G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.645G>A
  hgvsp: ENST00000398339.1:c.645G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.267G>A
  hgvsp: ENST00000564343.1:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.267G>A
  hgvsp: ENST00000537578.1:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.339G>A
  hgvsp: ENST00000564403.2:c.339G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456917
  ensembl transcript: ENST00000562512
  gene symbol: TCF4
  hgvsc: ENST00000562512.2:c.-52G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.267G>A
  hgvsp: ENST00000569357.1:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.267G>A
  hgvsp: ENST00000563824.1:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.267G>A
  hgvsp: ENST00000563888.2:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.267G>A
  hgvsp: ENST00000568147.1:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.201G>A
  variant of: http://identifiers.org/hgnc/11634
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly215Gly
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff

18-53070724-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070724
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070724
    reference: chr 18
allele count: 4
allele frequency: 3.295110056675893e-5
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-61A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000348374
  ensembl transcript: ENST00000356073
  gene symbol: TCF4
  hgvsc: ENST00000356073.4:c.330A>C
  hgvsp: ENST00000356073.4:c.330A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.258A>C
  hgvsp: ENST00000563824.1:c.258A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.258A>C
  hgvsp: ENST00000568740.1:c.258A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.324A>C
  hgvsp: ENST00000566286.1:c.324A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.330A>C
  hgvsp: ENST00000566279.1:c.330A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.258A>C
  hgvsp: ENST00000537578.1:c.258A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.258A>C
  hgvsp: ENST00000568147.1:c.258A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.330A>C
  hgvsp: ENST00000565018.2:c.330A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-61A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.192A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.93A>C
  hgvsp: ENST00000562847.1:c.93A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.330A>C
  hgvsp: ENST00000564403.2:c.330A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.258A>C
  hgvsp: ENST00000569357.1:c.258A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.636A>C
  hgvsp: ENST00000398339.1:c.636A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000566376
  gene symbol: TCF4
  hgvsc: ENST00000566376.2:n.14A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.120A>C
  hgvsp: ENST00000564228.1:c.120A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.258A>C
  hgvsp: ENST00000568673.1:c.258A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000565580
  gene symbol: TCF4
  hgvsc: ENST00000565580.1:n.259A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.330A>C
  hgvsp: ENST00000562543.1:c.330A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser212Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/18-53070734-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070734
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070734
    reference: chr 18
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.248G>T
  hgvsp: ENSP00000457113.1:p.Gly83Val
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.248G>T
  hgvsp: ENSP00000456983.1:p.Gly83Val
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.248G>T
  hgvsp: ENSP00000445202.1:p.Gly83Val
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.194G>T
  hgvsp: ENSP00000439656.1:p.Gly65Val
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.248G>T
  hgvsp: ENSP00000454328.1:p.Gly83Val
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.248G>T
  hgvsp: ENSP00000455135.1:p.Gly83Val
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.626G>T
  hgvsp: ENSP00000381382.1:p.Gly209Val
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-71G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.110G>T
  hgvsp: ENSP00000455261.1:p.Gly37Val
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.248G>T
  hgvsp: ENSP00000455163.1:p.Gly83Val
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.248G>T
  hgvsp: ENSP00000457747.2:p.Gly83Val
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000566376
  gene symbol: TCF4
  hgvsc: ENST00000566376.2:n.4G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.314G>T
  hgvsp: ENSP00000455418.2:p.Gly105Val
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.332G>T
  hgvsp: ENSP00000457392.1:p.Gly111Val
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.320G>T
  hgvsp: ENSP00000346440.3:p.Gly107Val
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.320G>T
  hgvsp: ENSP00000456125.1:p.Gly107Val
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000348374
  ensembl transcript: ENST00000356073
  gene symbol: TCF4
  hgvsc: ENST00000356073.4:c.320G>T
  hgvsp: ENSP00000348374.4:p.Gly107Val
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.182G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.110G>T
  hgvsp: ENSP00000441562.2:p.Gly37Val
  variant of: http://identifiers.org/hgnc/11634
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly209Val
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

18-53070734-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070734
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070734
    reference: chr 18
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.248G>A
  hgvsp: ENSP00000455163.1:p.Gly83Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.248G>A
  hgvsp: ENSP00000440731.1:p.Gly83Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.248G>A
  hgvsp: ENSP00000456983.1:p.Gly83Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000348374
  ensembl transcript: ENST00000356073
  gene symbol: TCF4
  hgvsc: ENST00000356073.4:c.320G>A
  hgvsp: ENSP00000348374.4:p.Gly107Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.248G>A
  hgvsp: ENSP00000455346.1:p.Gly83Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.320G>A
  hgvsp: ENSP00000346440.3:p.Gly107Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-71G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.110G>A
  hgvsp: ENSP00000441562.2:p.Gly37Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.320G>A
  hgvsp: ENSP00000455984.1:p.Gly107Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.320G>A
  hgvsp: ENSP00000457263.1:p.Gly107Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.248G>A
  hgvsp: ENSP00000455135.1:p.Gly83Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.332G>A
  hgvsp: ENSP00000457392.1:p.Gly111Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.248G>A
  hgvsp: ENSP00000454352.1:p.Gly83Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.320G>A
  hgvsp: ENSP00000456125.1:p.Gly107Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454584
  ensembl transcript: ENST00000565908
  gene symbol: TCF4
  hgvsc: ENST00000565908.2:c.248G>A
  hgvsp: ENSP00000454584.2:p.Gly83Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.626G>A
  hgvsp: ENSP00000381382.1:p.Gly209Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.83G>A
  hgvsp: ENSP00000454866.1:p.Gly28Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.248G>A
  hgvsp: ENSP00000454328.1:p.Gly83Asp
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.248G>A
  hgvsp: ENSP00000457747.2:p.Gly83Asp
  variant of: http://identifiers.org/hgnc/11634
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly209Asp
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/18-53070748-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070748
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070748
    reference: chr 18
allele count: 183
allele frequency: 1.518999950196723e-3
allele num: 120474
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.180T>G
  hgvsp: ENSP00000439656.1:p.Ser60Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.306T>G
  hgvsp: ENSP00000455984.1:p.Ser102Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.234T>G
  hgvsp: ENSP00000455163.1:p.Ser78Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.306T>G
  hgvsp: ENSP00000457263.1:p.Ser102Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-85T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.234T>G
  hgvsp: ENSP00000445202.1:p.Ser78Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.306T>G
  hgvsp: ENSP00000346440.3:p.Ser102Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000348374
  ensembl transcript: ENST00000356073
  gene symbol: TCF4
  hgvsc: ENST00000356073.4:c.306T>G
  hgvsp: ENSP00000348374.4:p.Ser102Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.234T>G
  hgvsp: ENSP00000440731.1:p.Ser78Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.306T>G
  hgvsp: ENSP00000456125.1:p.Ser102Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.96T>G
  hgvsp: ENST00000564228.1:c.96T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.234T>G
  hgvsp: ENSP00000454352.1:p.Ser78Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-85T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.612T>G
  hgvsp: ENSP00000381382.1:p.Ser204Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.69T>G
  hgvsp: ENSP00000454866.1:p.Ser23Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.234T>G
  hgvsp: ENSP00000457747.2:p.Ser78Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.234T>G
  hgvsp: ENSP00000456983.1:p.Ser78Arg
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.306T>G
  hgvsp: ENSP00000454366.1:p.Ser102Arg
  variant of: http://identifiers.org/hgnc/11634
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser204Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

18-53070763-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070763
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070763
    reference: chr 18
allele count: 52
allele frequency: 4.285690737962978e-4
allele num: 121334
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456917
  ensembl transcript: ENST00000562512
  gene symbol: TCF4
  hgvsc: ENST00000562512.2:c.-86-14G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-14G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.305-14G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-14G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-14G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-14G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.233-14G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.233-14G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-14G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.305-14G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.233-14G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-14G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-14G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-14G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000565580
  gene symbol: TCF4
  hgvsc: ENST00000565580.1:n.234-14G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-14G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-14G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.95-14G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-100G>A
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 1
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

18-53070764-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070764
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070764
    reference: chr 18
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-15C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-15C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.305-15C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-15C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-15C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454584
  ensembl transcript: ENST00000565908
  gene symbol: TCF4
  hgvsc: ENST00000565908.2:c.233-15C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000348374
  ensembl transcript: ENST00000356073
  gene symbol: TCF4
  hgvsc: ENST00000356073.4:c.305-15C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.305-15C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.233-15C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.95-15C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.299-15C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-15C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-15C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.233-15C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-15C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-15C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-101C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-15C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-15C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-15C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.305-15C>T
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/18-53070769-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070769
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070769
    reference: chr 18
allele count: 1
allele frequency: 8.244838730954422e-6
allele num: 121288
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-20T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-20T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-20T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-20T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-20T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-106T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-20T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-20T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-20T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-20T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456917
  ensembl transcript: ENST00000562512
  gene symbol: TCF4
  hgvsc: ENST00000562512.2:c.-86-20T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454584
  ensembl transcript: ENST00000565908
  gene symbol: TCF4
  hgvsc: ENST00000565908.2:c.233-20T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-20T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.233-20T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-20T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.305-20T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-20T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.233-20T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.233-20T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.167-20T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000565580
  gene symbol: TCF4
  hgvsc: ENST00000565580.1:n.234-20T>G
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

18-53070770-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070770
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070770
    reference: chr 18
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-21T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-21T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.95-21T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.233-21T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.305-21T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-21T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.167-21T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-21T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-21T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.233-21T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-21T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-21T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-21T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454584
  ensembl transcript: ENST00000565908
  gene symbol: TCF4
  hgvsc: ENST00000565908.2:c.233-21T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-21T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.305-21T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-21T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-21T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-21T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-107T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.95-21T>C
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

18-53070773-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070773
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070773
    reference: chr 18
allele count: 2
allele frequency: 1.650028875505322e-5
allele num: 121210
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-24C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-24C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-24C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-24C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.305-24C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454584
  ensembl transcript: ENST00000565908
  gene symbol: TCF4
  hgvsc: ENST00000565908.2:c.233-24C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-24C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.167-24C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-24C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-24C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-24C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000565580
  gene symbol: TCF4
  hgvsc: ENST00000565580.1:n.234-24C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.95-24C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.233-24C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-110C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.305-24C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-24C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-24C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456917
  ensembl transcript: ENST00000562512
  gene symbol: TCF4
  hgvsc: ENST00000562512.2:c.-86-24C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-24C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.233-24C>G
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

18-53070776-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070776
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070776
    reference: chr 18
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456917
  ensembl transcript: ENST00000562512
  gene symbol: TCF4
  hgvsc: ENST00000562512.2:c.-86-27A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.233-27A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-27A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.95-27A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-27A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-27A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-27A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000348374
  ensembl transcript: ENST00000356073
  gene symbol: TCF4
  hgvsc: ENST00000356073.4:c.305-27A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000565580
  gene symbol: TCF4
  hgvsc: ENST00000565580.1:n.234-27A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.233-27A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-27A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.305-27A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-113A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-27A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.233-27A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.299-27A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-27A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-27A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454584
  ensembl transcript: ENST00000565908
  gene symbol: TCF4
  hgvsc: ENST00000565908.2:c.233-27A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-27A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-27A>C
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

18-53070779-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070779
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070779
    reference: chr 18
allele count: 1
allele frequency: 8.253957772752034e-6
allele num: 121154
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-30T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-30T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-30T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456917
  ensembl transcript: ENST00000562512
  gene symbol: TCF4
  hgvsc: ENST00000562512.2:c.-86-30T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-30T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.233-30T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.305-30T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000565580
  gene symbol: TCF4
  hgvsc: ENST00000565580.1:n.234-30T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-116T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.305-30T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000348374
  ensembl transcript: ENST00000356073
  gene symbol: TCF4
  hgvsc: ENST00000356073.4:c.305-30T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-30T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.233-30T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-30T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-30T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-30T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.167-30T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-30T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.233-30T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-30T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.305-30T>C
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

18-53070783-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070783
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070783
    reference: chr 18
allele count: 11
allele frequency: 9.095870474804439e-5
allele num: 120934
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-34A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456917
  ensembl transcript: ENST00000562512
  gene symbol: TCF4
  hgvsc: ENST00000562512.2:c.-86-34A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-34A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-120A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-34A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-34A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-34A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-34A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-34A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.305-34A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.305-34A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000565580
  gene symbol: TCF4
  hgvsc: ENST00000565580.1:n.234-34A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-34A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-34A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-34A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.95-34A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-34A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.233-34A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.95-34A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-34A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.233-34A>G
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

18-53070784-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070784
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070784
    reference: chr 18
allele count: 1
allele frequency: 8.270067318347971e-6
allele num: 120918
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-35C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.233-35C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.305-35C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-35C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-35C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-35C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.95-35C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-35C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-35C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.305-35C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.95-35C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-35C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-35C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-121C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-35C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-35C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-35C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-35C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-35C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-35C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.305-35C>T
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD

18-53070787-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070787
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070787
    reference: chr 18
allele count: 3
allele frequency: 2.48541887592789e-5
allele num: 120704
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-38A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.233-38A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.233-38A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-38A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-38A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-38A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-38A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.305-38A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-38A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456917
  ensembl transcript: ENST00000562512
  gene symbol: TCF4
  hgvsc: ENST00000562512.2:c.-86-38A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-38A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454584
  ensembl transcript: ENST00000565908
  gene symbol: TCF4
  hgvsc: ENST00000565908.2:c.233-38A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-38A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-38A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-124A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-38A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-38A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-38A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-38A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000565580
  gene symbol: TCF4
  hgvsc: ENST00000565580.1:n.234-38A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-38A>G
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP

18-53070791-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070791
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070791
    reference: chr 18
allele count: 1
allele frequency: 8.311861025683651e-6
allele num: 120310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-42G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-42G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.167-42G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-42G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-42G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.305-42G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456917
  ensembl transcript: ENST00000562512
  gene symbol: TCF4
  hgvsc: ENST00000562512.2:c.-86-42G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.95-42G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-42G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-42G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-128G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.305-42G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-42G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.233-42G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-42G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.299-42G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-42G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-42G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-42G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-42G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-42G>A
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

18-53070793-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070793
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070794
    reference: chr 18
allele count: 140
allele frequency: 1.185556534110155e-3
allele num: 118088
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-45dupT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.95-45dupT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-45dupT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.305-45dupT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454584
  ensembl transcript: ENST00000565908
  gene symbol: TCF4
  hgvsc: ENST00000565908.2:c.233-45dupT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-45dupT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-131dupT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-45dupT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-45dupT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.233-45dupT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-45dupT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.233-45dupT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-45dupT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.167-45dupT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.233-45dupT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000565580
  gene symbol: TCF4
  hgvsc: ENST00000565580.1:n.234-45dupT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000348374
  ensembl transcript: ENST00000356073
  gene symbol: TCF4
  hgvsc: ENST00000356073.4:c.305-45dupT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-45dupT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-45dupT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.305-45dupT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-45dupT
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP

18-53070793-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070793
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070792
    reference: chr 18
allele count: 34
allele frequency: 2.879208725696091e-4
allele num: 118088
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-45delT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-45delT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-45delT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.305-45delT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-45delT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-45delT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-45delT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.95-45delT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.233-45delT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-45delT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-45delT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-45delT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000348374
  ensembl transcript: ENST00000356073
  gene symbol: TCF4
  hgvsc: ENST00000356073.4:c.305-45delT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-45delT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.233-45delT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.233-45delT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-131delT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-45delT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456917
  ensembl transcript: ENST00000562512
  gene symbol: TCF4
  hgvsc: ENST00000562512.2:c.-86-45delT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-45delT
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.299-45delT
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: TA
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/18-53070796-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070796
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070796
    reference: chr 18
allele count: 1
allele frequency: 8.356871855726965e-6
allele num: 119662
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-47T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.305-47T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-47T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.95-47T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-47T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-47T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.299-47T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.233-47T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456917
  ensembl transcript: ENST00000562512
  gene symbol: TCF4
  hgvsc: ENST00000562512.2:c.-86-47T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-47T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.233-47T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-47T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-47T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-47T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-47T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-47T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-133T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-47T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.95-47T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-47T>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-47T>G
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

18-53070802-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070802
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070801
    reference: chr 18
allele count: 1
allele frequency: 8.450513791238508e-6
allele num: 118336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.233-54delA
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-54delA
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.233-54delA
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456917
  ensembl transcript: ENST00000562512
  gene symbol: TCF4
  hgvsc: ENST00000562512.2:c.-86-54delA
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-54delA
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-140delA
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-54delA
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.94+49delA
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.167-54delA
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-54delA
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000565580
  gene symbol: TCF4
  hgvsc: ENST00000565580.1:n.234-54delA
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-54delA
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-54delA
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.305-54delA
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-54delA
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-54delA
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-54delA
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.305-54delA
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000348374
  ensembl transcript: ENST00000356073
  gene symbol: TCF4
  hgvsc: ENST00000356073.4:c.305-54delA
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.305-54delA
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.299-54delA
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: AT
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/18-53070804-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070804
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070804
    reference: chr 18
allele count: 3
allele frequency: 2.546948755391041e-5
allele num: 117788
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.233-55G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-55G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-55G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.305-55G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.305-55G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000348374
  ensembl transcript: ENST00000356073
  gene symbol: TCF4
  hgvsc: ENST00000356073.4:c.305-55G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-55G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-55G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-55G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454584
  ensembl transcript: ENST00000565908
  gene symbol: TCF4
  hgvsc: ENST00000565908.2:c.233-55G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-55G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.233-55G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-55G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.94+48G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-55G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-55G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-55G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-141G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-55G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-55G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.233-55G>T
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

18-53070807-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070807
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070807
    reference: chr 18
allele count: 1
allele frequency: 8.566337719298245e-6
allele num: 116736
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.233-58G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-58G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-58G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-58G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-58G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-58G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456917
  ensembl transcript: ENST00000562512
  gene symbol: TCF4
  hgvsc: ENST00000562512.2:c.-86-58G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.167-58G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-58G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.299-58G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.233-58G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-144G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.233-58G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-58G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-58G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-58G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-58G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.305-58G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-58G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-58G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.305-58G>A
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

18-53070813-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070813
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070813
    reference: chr 18
allele count: 1
allele frequency: 8.672274737663689e-6
allele num: 115310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-64C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-64C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.305-64C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-64C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-64C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-64C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-64C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000565580
  gene symbol: TCF4
  hgvsc: ENST00000565580.1:n.234-64C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.305-64C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-64C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-64C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-150C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.305-64C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-64C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.94+39C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.94+39C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.299-64C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-64C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456917
  ensembl transcript: ENST00000562512
  gene symbol: TCF4
  hgvsc: ENST00000562512.2:c.-86-64C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-64C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-64C>T
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD

18-53070819-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070819
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070819
    reference: chr 18
allele count: 14
allele frequency: 1.242897727272727e-4
allele num: 112640
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.94+33C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-70C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-70C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.233-70C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.233-70C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-70C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.167-70C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-70C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-156C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-70C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-70C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-70C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454584
  ensembl transcript: ENST00000565908
  gene symbol: TCF4
  hgvsc: ENST00000565908.2:c.233-70C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-70C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-70C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-70C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-70C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.305-70C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-70C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-70C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.233-70C>T
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

18-53070823-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070823
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070823
    reference: chr 18
allele count: 2
allele frequency: 1.804044668145983e-5
allele num: 110862
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-74A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.94+29A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.305-74A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-74A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-74A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-74A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-74A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-160A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-74A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000348374
  ensembl transcript: ENST00000356073
  gene symbol: TCF4
  hgvsc: ENST00000356073.4:c.305-74A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-74A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-74A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000565580
  gene symbol: TCF4
  hgvsc: ENST00000565580.1:n.234-74A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-74A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.305-74A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.233-74A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.233-74A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456917
  ensembl transcript: ENST00000562512
  gene symbol: TCF4
  hgvsc: ENST00000562512.2:c.-86-74A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.167-74A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-74A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.233-74A>G
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 1
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/18-53070824-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070824
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070824
    reference: chr 18
allele count: 1
allele frequency: 9.025107850038808e-6
allele num: 110802
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-161G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-75G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-75G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.233-75G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-75G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.299-75G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-75G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-75G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-75G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.94+28G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-75G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-75G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-75G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.167-75G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.305-75G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456917
  ensembl transcript: ENST00000562512
  gene symbol: TCF4
  hgvsc: ENST00000562512.2:c.-86-75G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-75G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-75G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000565580
  gene symbol: TCF4
  hgvsc: ENST00000565580.1:n.234-75G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-75G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.305-75G>T
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

18-53070827-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070827
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070827
    reference: chr 18
allele count: 1
allele frequency: 9.237875288683602e-6
allele num: 108250
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000348374
  ensembl transcript: ENST00000356073
  gene symbol: TCF4
  hgvsc: ENST00000356073.4:c.305-78G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-78G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-78G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-78G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.233-78G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-78G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-78G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-78G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.233-78G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.94+25G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.94+25G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.233-78G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.233-78G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-78G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.305-78G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-78G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-164G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-78G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-78G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454584
  ensembl transcript: ENST00000565908
  gene symbol: TCF4
  hgvsc: ENST00000565908.2:c.233-78G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-78G>A
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

18-53070831-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070831
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070831
    reference: chr 18
allele count: 1
allele frequency: 9.693491789612455e-6
allele num: 103162
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-82A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-82A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-82A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-82A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.94+21A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-82A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.305-82A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.94+21A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-82A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-82A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-82A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-82A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-82A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-168A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-82A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-82A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454584
  ensembl transcript: ENST00000565908
  gene symbol: TCF4
  hgvsc: ENST00000565908.2:c.233-82A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.233-82A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.299-82A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.233-82A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456917
  ensembl transcript: ENST00000562512
  gene symbol: TCF4
  hgvsc: ENST00000562512.2:c.-86-82A>G
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

18-53070833-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070833
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070833
    reference: chr 18
allele count: 1
allele frequency: 9.943520801845517e-6
allele num: 100568
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-84A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-84A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.94+19A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-170A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-84A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-84A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-84A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.233-84A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-84A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-84A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-84A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-84A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-84A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-84A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.94+19A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-84A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-84A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456917
  ensembl transcript: ENST00000562512
  gene symbol: TCF4
  hgvsc: ENST00000562512.2:c.-86-84A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-84A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.299-84A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.233-84A>G
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP

18-53070835-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070835
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070835
    reference: chr 18
allele count: 1
allele frequency: 9.958969047524201e-6
allele num: 100412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.94+17G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-86G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-86G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-172G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.299-86G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-86G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.233-86G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.305-86G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-86G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-86G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000565580
  gene symbol: TCF4
  hgvsc: ENST00000565580.1:n.234-86G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.305-86G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-86G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-86G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454584
  ensembl transcript: ENST00000565908
  gene symbol: TCF4
  hgvsc: ENST00000565908.2:c.233-86G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-86G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-86G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.233-86G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000348374
  ensembl transcript: ENST00000356073
  gene symbol: TCF4
  hgvsc: ENST00000356073.4:c.305-86G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456917
  ensembl transcript: ENST00000562512
  gene symbol: TCF4
  hgvsc: ENST00000562512.2:c.-86-86G>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-86G>C
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

18-53070838-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070838
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070838
    reference: chr 18
allele count: 3
allele frequency: 3.070247257245784e-5
allele num: 97712
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-89G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-89G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-89G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.305-89G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454584
  ensembl transcript: ENST00000565908
  gene symbol: TCF4
  hgvsc: ENST00000565908.2:c.233-89G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-89G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-89G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.233-89G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000565580
  gene symbol: TCF4
  hgvsc: ENST00000565580.1:n.234-89G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.94+14G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-89G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000348374
  ensembl transcript: ENST00000356073
  gene symbol: TCF4
  hgvsc: ENST00000356073.4:c.305-89G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.305-89G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-175G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-89G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-89G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.299-89G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-89G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-89G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-89G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-89G>A
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

18-53070839-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070839
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070839
    reference: chr 18
allele count: 5
allele frequency: 5.17170045510964e-5
allele num: 96680
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.305-90C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-90C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.233-90C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-90C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-90C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.94+13C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.94+13C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-90C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-90C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-90C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-90C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-90C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-90C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.167-90C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-90C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-90C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-90C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000565580
  gene symbol: TCF4
  hgvsc: ENST00000565580.1:n.234-90C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-176C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.305-90C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.299-90C>T
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

18-53070839-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070839
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070839
    reference: chr 18
allele count: 1
allele frequency: 1.034340091021928e-5
allele num: 96680
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-90C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454584
  ensembl transcript: ENST00000565908
  gene symbol: TCF4
  hgvsc: ENST00000565908.2:c.233-90C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-90C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.299-90C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.94+13C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-90C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.305-90C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-176C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-90C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-90C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.94+13C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-90C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-90C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.233-90C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-90C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-90C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.305-90C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-90C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456917
  ensembl transcript: ENST00000562512
  gene symbol: TCF4
  hgvsc: ENST00000562512.2:c.-86-90C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-90C>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.305-90C>G
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

18-53070851-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070851
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070851
    reference: chr 18
allele count: 1
allele frequency: 1.176415227518705e-5
allele num: 85004
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-102G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.299-102G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.233-102G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-102G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.167-102G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-102G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.305-102G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-102G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-102G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.94+1G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-102G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-102G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-102G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000348374
  ensembl transcript: ENST00000356073
  gene symbol: TCF4
  hgvsc: ENST00000356073.4:c.305-102G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-102G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.94+1G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-188G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-102G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.233-102G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-102G>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.233-102G>A
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.94+1G>A
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

18-53070852-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070852
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070852
    reference: chr 18
allele count: 1
allele frequency: 1.194828781035678e-5
allele num: 83694
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456917
  ensembl transcript: ENST00000562512
  gene symbol: TCF4
  hgvsc: ENST00000562512.2:c.-86-103C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-103C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.94C>T
  hgvsp: ENSP00000455261.1:p.Arg32Cys
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-103C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-103C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-103C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.233-103C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-103C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.233-103C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-103C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-103C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.305-103C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-103C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.299-103C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-189C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-103C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-103C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-103C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.305-103C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.233-103C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-103C>T
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg32Cys
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ

18-53070852-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070852
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070852
    reference: chr 18
allele count: 9
allele frequency: 1.07534590293211e-4
allele num: 83694
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454584
  ensembl transcript: ENST00000565908
  gene symbol: TCF4
  hgvsc: ENST00000565908.2:c.233-103C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000348374
  ensembl transcript: ENST00000356073
  gene symbol: TCF4
  hgvsc: ENST00000356073.4:c.305-103C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-103C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.233-103C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-103C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.305-103C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.94C>A
  hgvsp: ENSP00000441562.2:p.Arg32Ser
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-103C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-103C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456917
  ensembl transcript: ENST00000562512
  gene symbol: TCF4
  hgvsc: ENST00000562512.2:c.-86-103C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-103C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-103C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.305-103C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-189C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.233-103C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.299-103C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-103C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-103C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000565580
  gene symbol: TCF4
  hgvsc: ENST00000565580.1:n.234-103C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-103C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.305-103C>A
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg32Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

18-53070853-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070853
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070853
    reference: chr 18
allele count: 1
allele frequency: 1.206214416674708e-5
allele num: 82904
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-190A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.305-104A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.305-104A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-104A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-104A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.167-104A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454584
  ensembl transcript: ENST00000565908
  gene symbol: TCF4
  hgvsc: ENST00000565908.2:c.233-104A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-104A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-104A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-104A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-104A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-104A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.233-104A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.93A>G
  hgvsp: ENST00000564228.1:c.93A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.93A>G
  hgvsp: ENST00000544241.2:c.93A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-104A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-104A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-104A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.305-104A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.305-104A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-104A>G
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.93A>G
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

18-53070858-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070858
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070858
    reference: chr 18
allele count: 1
allele frequency: 1.283697047496791e-5
allele num: 77900
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-109A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-109A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000565580
  gene symbol: TCF4
  hgvsc: ENST00000565580.1:n.234-109A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.233-109A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454584
  ensembl transcript: ENST00000565908
  gene symbol: TCF4
  hgvsc: ENST00000565908.2:c.233-109A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-109A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-195A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-109A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.88A>G
  hgvsp: ENSP00000455261.1:p.Thr30Ala
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-109A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-109A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-109A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-109A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-109A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.167-109A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.305-109A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.88A>G
  hgvsp: ENSP00000441562.2:p.Thr30Ala
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-109A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-109A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.233-109A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000348374
  ensembl transcript: ENST00000356073
  gene symbol: TCF4
  hgvsc: ENST00000356073.4:c.305-109A>G
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Thr30Ala
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff

18-53070858-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070858
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070858
    reference: chr 18
allele count: 6
allele frequency: 7.702182284980745e-5
allele num: 77900
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-109A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.299-109A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-109A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.88A>C
  hgvsp: ENSP00000441562.2:p.Thr30Pro
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.305-109A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.233-109A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.167-109A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-109A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-109A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.305-109A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-109A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-109A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-109A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.88A>C
  hgvsp: ENSP00000455261.1:p.Thr30Pro
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.305-109A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-195A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.305-109A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-109A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-109A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.233-109A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-109A>C
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Thr30Pro
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP

18-53070861-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070861
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070861
    reference: chr 18
allele count: 9
allele frequency: 1.217400714208419e-4
allele num: 73928
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.305-112C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.167-112C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.233-112C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-112C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-112C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-112C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.305-112C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-112C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.233-112C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454584
  ensembl transcript: ENST00000565908
  gene symbol: TCF4
  hgvsc: ENST00000565908.2:c.233-112C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-112C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-112C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-112C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-112C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-112C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-198C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.85C>A
  hgvsp: ENSP00000455261.1:p.Pro29Thr
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-112C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000348374
  ensembl transcript: ENST00000356073
  gene symbol: TCF4
  hgvsc: ENST00000356073.4:c.305-112C>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.85C>A
  hgvsp: ENSP00000441562.2:p.Pro29Thr
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-112C>A
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro29Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/18-53070867-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070867
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070867
    reference: chr 18
allele count: 1
allele frequency: 1.418158096264572e-5
allele num: 70514
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.233-118G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-118G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-118G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-204G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-118G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-118G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-118G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000565580
  gene symbol: TCF4
  hgvsc: ENST00000565580.1:n.234-118G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.79G>T
  hgvsp: ENSP00000455261.1:p.Val27Leu
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-118G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-118G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-118G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.305-118G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-118G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454584
  ensembl transcript: ENST00000565908
  gene symbol: TCF4
  hgvsc: ENST00000565908.2:c.233-118G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-118G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.79G>T
  hgvsp: ENSP00000441562.2:p.Val27Leu
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.305-118G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-118G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-118G>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-118G>T
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Val27Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

18-53070874-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070874
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070874
    reference: chr 18
allele count: 1
allele frequency: 1.556468683850081e-5
allele num: 64248
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.72A>G
  hgvsp: ENST00000564228.1:c.72A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-125A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-125A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-125A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.233-125A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000565580
  gene symbol: TCF4
  hgvsc: ENST00000565580.1:n.234-125A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-125A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.233-125A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.299-125A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-125A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.72A>G
  hgvsp: ENST00000544241.2:c.72A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.305-125A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.305-125A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-125A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.305-125A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.167-125A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-125A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-125A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-125A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-211A>G
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-125A>G
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Thr24Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: T
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

18-53070874-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070874
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070874
    reference: chr 18
allele count: 0
allele frequency: 0.0e0
allele num: 64248
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.72A>C
  hgvsp: ENST00000564228.1:c.72A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-125A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454584
  ensembl transcript: ENST00000565908
  gene symbol: TCF4
  hgvsc: ENST00000565908.2:c.233-125A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.233-125A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-125A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-125A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.72A>C
  hgvsp: ENST00000544241.2:c.72A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.233-125A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-125A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-211A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456125
  ensembl transcript: ENST00000566279
  gene symbol: TCF4
  hgvsc: ENST00000566279.1:c.305-125A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-125A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-125A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.233-125A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.167-125A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-125A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-125A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-125A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456917
  ensembl transcript: ENST00000562512
  gene symbol: TCF4
  hgvsc: ENST00000562512.2:c.-86-125A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.305-125A>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-125A>C
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Thr24Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

18-53070879-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070879
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070879
    reference: chr 18
allele count: 1
allele frequency: 1.720045409198803e-5
allele num: 58138
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-130C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-130C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.167-130C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.233-130C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-130C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.67C>T
  hgvsp: ENSP00000441562.2:p.His23Tyr
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-130C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.233-130C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-130C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.305-130C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-130C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.233-130C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-130C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000565580
  gene symbol: TCF4
  hgvsc: ENST00000565580.1:n.234-130C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-130C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-216C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-130C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-130C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-130C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-130C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.67C>T
  hgvsp: ENSP00000455261.1:p.His23Tyr
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.His23Tyr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

18-53070881-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070881
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070881
    reference: chr 18
allele count: 1
allele frequency: 1.745810055865922e-5
allele num: 57280
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000565580
  gene symbol: TCF4
  hgvsc: ENST00000565580.1:n.234-132T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-132T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-132T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-132T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-132T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454584
  ensembl transcript: ENST00000565908
  gene symbol: TCF4
  hgvsc: ENST00000565908.2:c.233-132T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-132T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-132T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.65T>C
  hgvsp: ENSP00000455261.1:p.Leu22Ser
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-132T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-132T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456917
  ensembl transcript: ENST00000562512
  gene symbol: TCF4
  hgvsc: ENST00000562512.2:c.-86-132T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.65T>C
  hgvsp: ENSP00000441562.2:p.Leu22Ser
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-132T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.305-132T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.233-132T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-218T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.299-132T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457263
  ensembl transcript: ENST00000564403
  gene symbol: TCF4
  hgvsc: ENST00000564403.2:c.305-132T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-132T>C
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.167-132T>C
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu22Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: A
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

18-53070883-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070883
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070883
    reference: chr 18
allele count: 1
allele frequency: 1.850344164014507e-5
allele num: 54044
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.233-134C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-134C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-134C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.305-134C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-220C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-134C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.63C>T
  hgvsp: ENST00000564228.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457392
  ensembl transcript: ENST00000568169
  gene symbol: TCF4
  hgvsc: ENST00000568169.1:c.317-134C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.167-134C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-134C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-134C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.299-134C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-134C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-134C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-134C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-134C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.305-134C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.233-134C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000565580
  gene symbol: TCF4
  hgvsc: ENST00000565580.1:n.234-134C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.305-134C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454328
  ensembl transcript: ENST00000564343
  gene symbol: TCF4
  hgvsc: ENST00000564343.1:c.233-134C>T
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Cys21Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

18-53070908-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070908
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070908
    reference: chr 18
allele count: 0
allele frequency: 0.0e0
allele num: 35154
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-159T>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-159T>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-159T>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455450
  ensembl transcript: ENST00000562543
  gene symbol: TCF4
  hgvsc: ENST00000562543.1:c.305-159T>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-159T>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457113
  ensembl transcript: ENST00000563824
  gene symbol: TCF4
  hgvsc: ENST00000563824.1:c.233-159T>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-245T>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454584
  ensembl transcript: ENST00000565908
  gene symbol: TCF4
  hgvsc: ENST00000565908.2:c.233-159T>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455179
  ensembl transcript: ENST00000561992
  gene symbol: TCF4
  hgvsc: ENST00000561992.1:c.-86-159T>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455135
  ensembl transcript: ENST00000568673
  gene symbol: TCF4
  hgvsc: ENST00000568673.1:c.233-159T>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.167-159T>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.305-159T>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.299-159T>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-159T>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.38T>A
  hgvsp: ENSP00000455261.1:p.Val13Glu
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.305-159T>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456983
  ensembl transcript: ENST00000566514
  gene symbol: TCF4
  hgvsc: ENST00000566514.1:c.233-159T>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000565580
  gene symbol: TCF4
  hgvsc: ENST00000565580.1:n.234-159T>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-159T>A
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.38T>A
  hgvsp: ENSP00000441562.2:p.Val13Glu
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454352
  ensembl transcript: ENST00000569357
  gene symbol: TCF4
  hgvsc: ENST00000569357.1:c.233-159T>A
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Val13Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

18-53070914-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53070914
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 53070914
    reference: chr 18
allele count: 6624
allele frequency: 2.172943183309277e-1
allele num: 30484
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457245
  ensembl transcript: ENST00000566777
  gene symbol: TCF4
  hgvsc: ENST00000566777.1:c.-86-165C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000346440
  ensembl transcript: ENST00000354452
  gene symbol: TCF4
  hgvsc: ENST00000354452.3:c.305-165C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000445202
  ensembl transcript: ENST00000540999
  gene symbol: TCF4
  hgvsc: ENST00000540999.1:c.233-165C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000441562
  ensembl transcript: ENST00000544241
  gene symbol: TCF4
  hgvsc: ENST00000544241.2:c.32C>T
  hgvsp: ENSP00000441562.2:p.Ala11Val
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455346
  ensembl transcript: ENST00000568740
  gene symbol: TCF4
  hgvsc: ENST00000568740.1:c.233-165C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: true
  clinical significance: likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000381382
  ensembl transcript: ENST00000398339
  gene symbol: TCF4
  hgvsc: ENST00000398339.1:c.611-165C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: missense_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455261
  ensembl transcript: ENST00000564228
  gene symbol: TCF4
  hgvsc: ENST00000564228.1:c.32C>T
  hgvsp: ENSP00000455261.1:p.Ala11Val
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454366
  ensembl transcript: ENST00000567880
  gene symbol: TCF4
  hgvsc: ENST00000567880.1:c.305-165C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000454866
  ensembl transcript: ENST00000562847
  gene symbol: TCF4
  hgvsc: ENST00000562847.1:c.68-165C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000456917
  ensembl transcript: ENST00000562512
  gene symbol: TCF4
  hgvsc: ENST00000562512.2:c.-86-165C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000440731
  ensembl transcript: ENST00000537578
  gene symbol: TCF4
  hgvsc: ENST00000537578.1:c.233-165C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455163
  ensembl transcript: ENST00000568147
  gene symbol: TCF4
  hgvsc: ENST00000568147.1:c.233-165C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl transcript: ENST00000563686
  gene symbol: TCF4
  hgvsc: ENST00000563686.1:n.167-165C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455984
  ensembl transcript: ENST00000565018
  gene symbol: TCF4
  hgvsc: ENST00000565018.2:c.305-165C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000455418
  ensembl transcript: ENST00000566286
  gene symbol: TCF4
  hgvsc: ENST00000566286.1:c.299-165C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000458122
  ensembl transcript: ENST00000568186
  gene symbol: TCF4
  hgvsc: ENST00000568186.1:c.-251C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457747
  ensembl transcript: ENST00000563888
  gene symbol: TCF4
  hgvsc: ENST00000563888.2:c.233-165C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000457649
  ensembl transcript: ENST00000564999
  gene symbol: TCF4
  hgvsc: ENST00000564999.1:c.305-165C>T
  variant of: http://identifiers.org/hgnc/11634
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000196628
  ensembl protein: ENSP00000439656
  ensembl transcript: ENST00000543082
  gene symbol: TCF4
  hgvsc: ENST00000543082.1:c.179-165C>T
  variant of: http://identifiers.org/hgnc/11634
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala11Val
num of homozygotes: 695
reference allele: G

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457245
ensembl transcript: ENST00000566777
gene symbol: TCF4
hgvsc: ENST00000566777.1:c.-22+9G>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456983
ensembl transcript: ENST00000566514
gene symbol: TCF4
hgvsc: ENST00000566514.1:c.297+9G>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.297+9G>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000566376
gene symbol: TCF4
hgvsc: ENST00000566376.2:n.53+9G>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457747
ensembl transcript: ENST00000563888
gene symbol: TCF4
hgvsc: ENST00000563888.2:c.297+9G>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000439656
ensembl transcript: ENST00000543082
gene symbol: TCF4
hgvsc: ENST00000543082.1:c.243+9G>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.369+9G>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455418
ensembl transcript: ENST00000566286
gene symbol: TCF4
hgvsc: ENST00000566286.1:c.363+9G>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-22+9G>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455179
ensembl transcript: ENST00000561992
gene symbol: TCF4
hgvsc: ENST00000561992.1:c.-22+9G>C
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 279
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1821
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 545
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 497
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1167
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 422
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 338
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8631
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27734
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 233
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 875
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 293
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1214
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3185
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12679
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 772
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1923
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40244
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5860
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8259
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1118
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.031778e6

FS
type: SiteQuality
SIO_000300: 2.266e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.771e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.501e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

VQSLOD
type: SiteQuality
SIO_000300: 9.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.54e-1

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457747
ensembl transcript: ENST00000563888
gene symbol: TCF4
hgvsc: ENST00000563888.2:c.297+6_297+7delTG
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455179
ensembl transcript: ENST00000561992
gene symbol: TCF4
hgvsc: ENST00000561992.1:c.-22+6_-22+7delTG
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000440731
ensembl transcript: ENST00000537578
gene symbol: TCF4
hgvsc: ENST00000537578.1:c.297+6_297+7delTG
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457649
ensembl transcript: ENST00000564999
gene symbol: TCF4
hgvsc: ENST00000564999.1:c.369+6_369+7delTG
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455346
ensembl transcript: ENST00000568740
gene symbol: TCF4
hgvsc: ENST00000568740.1:c.297+6_297+7delTG
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000458122
ensembl transcript: ENST00000568186
gene symbol: TCF4
hgvsc: ENST00000568186.1:c.-22+6_-22+7delTG
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.369+6_369+7delTG
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-22+6_-22+7delTG
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455418
ensembl transcript: ENST00000566286
gene symbol: TCF4
hgvsc: ENST00000566286.1:c.363+6_363+7delTG
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.369+6_369+7delTG
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.369+6_369+7delTG
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457113
ensembl transcript: ENST00000563824
gene symbol: TCF4
hgvsc: ENST00000563824.1:c.297+6_297+7delTG
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 422
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1214
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 12679
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 293
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1821
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1167
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8631
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 772
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27733
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 545
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3187
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 233
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 874
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 338
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 279
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 497
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5859
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 532
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8263
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1923
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40245
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.592464569650881e-4
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.08e-1

QD
type: SiteQuality
SIO_000300: 1.702e1

FS
type: SiteQuality
SIO_000300: 1.883e0

MQ
type: SiteQuality
SIO_000300: 6.005e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.427e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e-1

DP
type: SiteQuality
SIO_000300: 2.031924e6

VQSLOD
type: SiteQuality
SIO_000300: 3.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.473e0

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000458122
ensembl transcript: ENST00000568186
gene symbol: TCF4
hgvsc: ENST00000568186.1:c.-35A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000346440
ensembl transcript: ENST00000354452
gene symbol: TCF4
hgvsc: ENST00000354452.3:c.356A>G
hgvsp: ENSP00000346440.3:p.Gln119Arg
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455135
ensembl transcript: ENST00000568673
gene symbol: TCF4
hgvsc: ENST00000568673.1:c.284A>G
hgvsp: ENSP00000455135.1:p.Gln95Arg
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455346
ensembl transcript: ENST00000568740
gene symbol: TCF4
hgvsc: ENST00000568740.1:c.284A>G
hgvsp: ENSP00000455346.1:p.Gln95Arg
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-35A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.356A>G
hgvsp: ENSP00000454366.1:p.Gln119Arg
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457649
ensembl transcript: ENST00000564999
gene symbol: TCF4
hgvsc: ENST00000564999.1:c.356A>G
hgvsp: ENSP00000457649.1:p.Gln119Arg
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.356A>G
hgvsp: ENSP00000457263.1:p.Gln119Arg
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.284A>G
hgvsp: ENSP00000454584.2:p.Gln95Arg
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457747
ensembl transcript: ENST00000563888
gene symbol: TCF4
hgvsc: ENST00000563888.2:c.284A>G
hgvsp: ENSP00000457747.2:p.Gln95Arg
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454352
ensembl transcript: ENST00000569357
gene symbol: TCF4
hgvsc: ENST00000569357.1:c.284A>G
hgvsp: ENSP00000454352.1:p.Gln95Arg
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000439656
ensembl transcript: ENST00000543082
gene symbol: TCF4
hgvsc: ENST00000543082.1:c.230A>G
hgvsp: ENSP00000439656.1:p.Gln77Arg
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457392
ensembl transcript: ENST00000568169
gene symbol: TCF4
hgvsc: ENST00000568169.1:c.368A>G
hgvsp: ENSP00000457392.1:p.Gln123Arg
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.285A>G
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 545
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12682
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 338
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 497
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 772
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 422
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 279
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1167
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1821
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3186
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 232
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 293
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8616
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 874
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27751
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1212
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8263
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40249
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1927
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5856
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.48e-1

FS
type: SiteQuality
SIO_000300: 1.822e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.05e-1

DP
type: SiteQuality
SIO_000300: 2.031652e6

MQ
type: SiteQuality
SIO_000300: 5.938e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-1

QD
type: SiteQuality
SIO_000300: 1.144e1

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455418
ensembl transcript: ENST00000566286
gene symbol: TCF4
hgvsc: ENST00000566286.1:c.343A>G
hgvsp: ENSP00000455418.2:p.Asn115Asp
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000563686
gene symbol: TCF4
hgvsc: ENST00000563686.1:n.211A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457245
ensembl transcript: ENST00000566777
gene symbol: TCF4
hgvsc: ENST00000566777.1:c.-42A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.278A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457392
ensembl transcript: ENST00000568169
gene symbol: TCF4
hgvsc: ENST00000568169.1:c.361A>G
hgvsp: ENSP00000457392.1:p.Asn121Asp
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456983
ensembl transcript: ENST00000566514
gene symbol: TCF4
hgvsc: ENST00000566514.1:c.277A>G
hgvsp: ENSP00000456983.1:p.Asn93Asp
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000441562
ensembl transcript: ENST00000544241
gene symbol: TCF4
hgvsc: ENST00000544241.2:c.139A>G
hgvsp: ENSP00000441562.2:p.Asn47Asp
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454328
ensembl transcript: ENST00000564343
gene symbol: TCF4
hgvsc: ENST00000564343.1:c.277A>G
hgvsp: ENSP00000454328.1:p.Asn93Asp
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000566376
gene symbol: TCF4
hgvsc: ENST00000566376.2:n.33A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455261
ensembl transcript: ENST00000564228
gene symbol: TCF4
hgvsc: ENST00000564228.1:c.139A>G
hgvsp: ENSP00000455261.1:p.Asn47Asp
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455346
ensembl transcript: ENST00000568740
gene symbol: TCF4
hgvsc: ENST00000568740.1:c.277A>G
hgvsp: ENSP00000455346.1:p.Asn93Asp
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.349A>G
hgvsp: ENSP00000455984.1:p.Asn117Asp
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457113
ensembl transcript: ENST00000563824
gene symbol: TCF4
hgvsc: ENST00000563824.1:c.277A>G
hgvsp: ENSP00000457113.1:p.Asn93Asp
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-42A>G
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 1821
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 232
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 293
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12683
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 874
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3185
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8620
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 338
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1212
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1167
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 497
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 279
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 422
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 771
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 545
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27749
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8263
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1118
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1925
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5855
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40252
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

DP
type: SiteQuality
SIO_000300: 2.031551e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.0e0

QD
type: SiteQuality
SIO_000300: 1.141e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000566376
gene symbol: TCF4
hgvsc: ENST00000566376.2:n.25G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454352
ensembl transcript: ENST00000569357
gene symbol: TCF4
hgvsc: ENST00000569357.1:c.269G>A
hgvsp: ENSP00000454352.1:p.Arg90Lys
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456983
ensembl transcript: ENST00000566514
gene symbol: TCF4
hgvsc: ENST00000566514.1:c.269G>A
hgvsp: ENSP00000456983.1:p.Arg90Lys
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-50G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000346440
ensembl transcript: ENST00000354452
gene symbol: TCF4
hgvsc: ENST00000354452.3:c.341G>A
hgvsp: ENSP00000346440.3:p.Arg114Lys
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455179
ensembl transcript: ENST00000561992
gene symbol: TCF4
hgvsc: ENST00000561992.1:c.-50G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.341G>A
hgvsp: ENSP00000454366.1:p.Arg114Lys
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457113
ensembl transcript: ENST00000563824
gene symbol: TCF4
hgvsc: ENST00000563824.1:c.269G>A
hgvsp: ENSP00000457113.1:p.Arg90Lys
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000563686
gene symbol: TCF4
hgvsc: ENST00000563686.1:n.203G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457747
ensembl transcript: ENST00000563888
gene symbol: TCF4
hgvsc: ENST00000563888.2:c.269G>A
hgvsp: ENSP00000457747.2:p.Arg90Lys
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.341G>A
hgvsp: ENSP00000455984.1:p.Arg114Lys
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.269G>A
hgvsp: ENSP00000454584.2:p.Arg90Lys
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.270G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457245
ensembl transcript: ENST00000566777
gene symbol: TCF4
hgvsc: ENST00000566777.1:c.-50G>A
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 422
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 497
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 293
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1821
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 338
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27752
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8616
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12682
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 874
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 279
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 233
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 543
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1167
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 771
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3185
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1212
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 12
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5854
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40254
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1941
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1925
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8263
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.05708245243129e-3
allele num: 10406
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.348e0

VQSLOD
type: SiteQuality
SIO_000300: 4.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.259e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.04e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

DP
type: SiteQuality
SIO_000300: 2.032306e6

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.339G>A
hgvsp: ENST00000356073.4:c.339G>A(p.%3D)
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000566376
gene symbol: TCF4
hgvsc: ENST00000566376.2:n.23G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456125
ensembl transcript: ENST00000566279
gene symbol: TCF4
hgvsc: ENST00000566279.1:c.339G>A
hgvsp: ENST00000566279.1:c.339G>A(p.%3D)
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457649
ensembl transcript: ENST00000564999
gene symbol: TCF4
hgvsc: ENST00000564999.1:c.339G>A
hgvsp: ENST00000564999.1:c.339G>A(p.%3D)
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457245
ensembl transcript: ENST00000566777
gene symbol: TCF4
hgvsc: ENST00000566777.1:c.-52G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.339G>A
hgvsp: ENST00000565018.2:c.339G>A(p.%3D)
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000458122
ensembl transcript: ENST00000568186
gene symbol: TCF4
hgvsc: ENST00000568186.1:c.-52G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000439656
ensembl transcript: ENST00000543082
gene symbol: TCF4
hgvsc: ENST00000543082.1:c.213G>A
hgvsp: ENST00000543082.1:c.213G>A(p.%3D)
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000441562
ensembl transcript: ENST00000544241
gene symbol: TCF4
hgvsc: ENST00000544241.2:c.129G>A
hgvsp: ENST00000544241.2:c.129G>A(p.%3D)
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456983
ensembl transcript: ENST00000566514
gene symbol: TCF4
hgvsc: ENST00000566514.1:c.267G>A
hgvsp: ENST00000566514.1:c.267G>A(p.%3D)
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455179
ensembl transcript: ENST00000561992
gene symbol: TCF4
hgvsc: ENST00000561992.1:c.-52G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.268G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455261
ensembl transcript: ENST00000564228
gene symbol: TCF4
hgvsc: ENST00000564228.1:c.129G>A
hgvsp: ENST00000564228.1:c.129G>A(p.%3D)
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.267G>A
hgvsp: ENST00000565908.2:c.267G>A(p.%3D)
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 232
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 497
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12685
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 279
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1821
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3186
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 874
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 293
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27756
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8618
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 543
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 770
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1203
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1167
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 422
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 338
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1926
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5843
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40256
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1942
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8265
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.331e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.553e0

MQ
type: SiteQuality
SIO_000300: 5.929e1

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.02e-1

QD
type: SiteQuality
SIO_000300: 1.21e1

DP
type: SiteQuality
SIO_000300: 2.030407e6

FS
type: SiteQuality
SIO_000300: 7.373e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457649
ensembl transcript: ENST00000564999
gene symbol: TCF4
hgvsc: ENST00000564999.1:c.330A>C
hgvsp: ENST00000564999.1:c.330A>C(p.%3D)
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457747
ensembl transcript: ENST00000563888
gene symbol: TCF4
hgvsc: ENST00000563888.2:c.258A>C
hgvsp: ENST00000563888.2:c.258A>C(p.%3D)
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.330A>C
hgvsp: ENST00000567880.1:c.330A>C(p.%3D)
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455179
ensembl transcript: ENST00000561992
gene symbol: TCF4
hgvsc: ENST00000561992.1:c.-61A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.258A>C
hgvsp: ENST00000565908.2:c.258A>C(p.%3D)
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454328
ensembl transcript: ENST00000564343
gene symbol: TCF4
hgvsc: ENST00000564343.1:c.258A>C
hgvsp: ENST00000564343.1:c.258A>C(p.%3D)
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457392
ensembl transcript: ENST00000568169
gene symbol: TCF4
hgvsc: ENST00000568169.1:c.342A>C
hgvsp: ENST00000568169.1:c.342A>C(p.%3D)
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000441562
ensembl transcript: ENST00000544241
gene symbol: TCF4
hgvsc: ENST00000544241.2:c.120A>C
hgvsp: ENST00000544241.2:c.120A>C(p.%3D)
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-61A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000346440
ensembl transcript: ENST00000354452
gene symbol: TCF4
hgvsc: ENST00000354452.3:c.330A>C
hgvsp: ENST00000354452.3:c.330A>C(p.%3D)
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000439656
ensembl transcript: ENST00000543082
gene symbol: TCF4
hgvsc: ENST00000543082.1:c.204A>C
hgvsp: ENST00000543082.1:c.204A>C(p.%3D)
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000445202
ensembl transcript: ENST00000540999
gene symbol: TCF4
hgvsc: ENST00000540999.1:c.258A>C
hgvsp: ENST00000540999.1:c.258A>C(p.%3D)
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456983
ensembl transcript: ENST00000566514
gene symbol: TCF4
hgvsc: ENST00000566514.1:c.258A>C
hgvsp: ENST00000566514.1:c.258A>C(p.%3D)
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 338
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1821
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12684
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 497
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27760
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 279
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8614
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 293
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 874
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1202
bin: 9.75e1
variant carriers: 4

GenotypeDepth
all individuals: 1167
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 543
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 422
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3185
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 770
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 232
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40257
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8263
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5842
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 796
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1943
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1927
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.843936190659235e-4
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.79e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.11e0

FS
type: SiteQuality
SIO_000300: 1.225e0

DP
type: SiteQuality
SIO_000300: 2.030621e6

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.286e1

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.248G>T
hgvsp: ENSP00000454584.2:p.Gly83Val
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000458122
ensembl transcript: ENST00000568186
gene symbol: TCF4
hgvsc: ENST00000568186.1:c.-71G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.249G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.320G>T
hgvsp: ENSP00000455450.1:p.Gly107Val
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.320G>T
hgvsp: ENSP00000455984.1:p.Gly107Val
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454352
ensembl transcript: ENST00000569357
gene symbol: TCF4
hgvsc: ENST00000569357.1:c.248G>T
hgvsp: ENSP00000454352.1:p.Gly83Val
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.320G>T
hgvsp: ENSP00000457263.1:p.Gly107Val
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454866
ensembl transcript: ENST00000562847
gene symbol: TCF4
hgvsc: ENST00000562847.1:c.83G>T
hgvsp: ENSP00000454866.1:p.Gly28Val
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455179
ensembl transcript: ENST00000561992
gene symbol: TCF4
hgvsc: ENST00000561992.1:c.-71G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455346
ensembl transcript: ENST00000568740
gene symbol: TCF4
hgvsc: ENST00000568740.1:c.248G>T
hgvsp: ENSP00000455346.1:p.Gly83Val
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457649
ensembl transcript: ENST00000564999
gene symbol: TCF4
hgvsc: ENST00000564999.1:c.320G>T
hgvsp: ENSP00000457649.1:p.Gly107Val
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-71G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000440731
ensembl transcript: ENST00000537578
gene symbol: TCF4
hgvsc: ENST00000537578.1:c.248G>T
hgvsp: ENSP00000440731.1:p.Gly83Val
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.320G>T
hgvsp: ENSP00000454366.1:p.Gly107Val
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 338
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8608
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 279
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 497
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3184
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27756
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1199
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1821
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 874
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 543
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1167
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 770
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12689
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 422
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 293
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1941
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40247
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8262
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1118
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5838
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1928
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 9.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.16e-1

QD
type: SiteQuality
SIO_000300: 1.029e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.735e0

DP
type: SiteQuality
SIO_000300: 2.02981e6

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.320G>A
hgvsp: ENSP00000455450.1:p.Gly107Asp
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000439656
ensembl transcript: ENST00000543082
gene symbol: TCF4
hgvsc: ENST00000543082.1:c.194G>A
hgvsp: ENSP00000439656.1:p.Gly65Asp
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000566376
gene symbol: TCF4
hgvsc: ENST00000566376.2:n.4G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.249G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000563686
gene symbol: TCF4
hgvsc: ENST00000563686.1:n.182G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.320G>A
hgvsp: ENSP00000454366.1:p.Gly107Asp
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455179
ensembl transcript: ENST00000561992
gene symbol: TCF4
hgvsc: ENST00000561992.1:c.-71G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457113
ensembl transcript: ENST00000563824
gene symbol: TCF4
hgvsc: ENST00000563824.1:c.248G>A
hgvsp: ENSP00000457113.1:p.Gly83Asp
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-71G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000445202
ensembl transcript: ENST00000540999
gene symbol: TCF4
hgvsc: ENST00000540999.1:c.248G>A
hgvsp: ENSP00000445202.1:p.Gly83Asp
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455261
ensembl transcript: ENST00000564228
gene symbol: TCF4
hgvsc: ENST00000564228.1:c.110G>A
hgvsp: ENSP00000455261.1:p.Gly37Asp
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455418
ensembl transcript: ENST00000566286
gene symbol: TCF4
hgvsc: ENST00000566286.1:c.314G>A
hgvsp: ENSP00000455418.2:p.Gly105Asp
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000458122
ensembl transcript: ENST00000568186
gene symbol: TCF4
hgvsc: ENST00000568186.1:c.-71G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457649
ensembl transcript: ENST00000564999
gene symbol: TCF4
hgvsc: ENST00000564999.1:c.320G>A
hgvsp: ENSP00000457649.1:p.Gly107Asp
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 1167
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27756
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8608
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12689
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 497
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 543
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1199
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1821
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3184
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 279
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 293
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 770
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 422
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 874
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 338
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1941
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1118
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40247
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8262
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5838
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1928
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.029e1

DP
type: SiteQuality
SIO_000300: 2.02981e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

FS
type: SiteQuality
SIO_000300: 9.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.735e0

Annotation
canonical: false
consequence: missense_variant
consequence: splice_region_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455135
ensembl transcript: ENST00000568673
gene symbol: TCF4
hgvsc: ENST00000568673.1:c.234T>G
hgvsp: ENSP00000455135.1:p.Ser78Arg
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
consequence: splice_region_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455346
ensembl transcript: ENST00000568740
gene symbol: TCF4
hgvsc: ENST00000568740.1:c.234T>G
hgvsp: ENSP00000455346.1:p.Ser78Arg
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: synonymous_variant
consequence: splice_region_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000441562
ensembl transcript: ENST00000544241
gene symbol: TCF4
hgvsc: ENST00000544241.2:c.96T>G
hgvsp: ENST00000544241.2:c.96T>G(p.%3D)
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
consequence: splice_region_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.306T>G
hgvsp: ENSP00000455450.1:p.Ser102Arg
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
consequence: splice_region_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.235T>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
consequence: splice_region_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457649
ensembl transcript: ENST00000564999
gene symbol: TCF4
hgvsc: ENST00000564999.1:c.306T>G
hgvsp: ENSP00000457649.1:p.Ser102Arg
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: splice_region_variant
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455179
ensembl transcript: ENST00000561992
gene symbol: TCF4
hgvsc: ENST00000561992.1:c.-85T>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
consequence: splice_region_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457392
ensembl transcript: ENST00000568169
gene symbol: TCF4
hgvsc: ENST00000568169.1:c.318T>G
hgvsp: ENSP00000457392.1:p.Ser106Arg
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
consequence: splice_region_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457113
ensembl transcript: ENST00000563824
gene symbol: TCF4
hgvsc: ENST00000563824.1:c.234T>G
hgvsp: ENSP00000457113.1:p.Ser78Arg
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
consequence: splice_region_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455418
ensembl transcript: ENST00000566286
gene symbol: TCF4
hgvsc: ENST00000566286.1:c.300T>G
hgvsp: ENSP00000455418.2:p.Ser100Arg
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: splice_region_variant
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-85T>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
consequence: splice_region_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000563686
gene symbol: TCF4
hgvsc: ENST00000563686.1:n.168T>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
consequence: splice_region_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.234T>G
hgvsp: ENSP00000454584.2:p.Ser78Arg
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
consequence: splice_region_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454328
ensembl transcript: ENST00000564343
gene symbol: TCF4
hgvsc: ENST00000564343.1:c.234T>G
hgvsp: ENSP00000454328.1:p.Ser78Arg
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12693
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8602
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1175
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1831
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 775
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1180
bin: 9.75e1
variant carriers: 146

GenotypeDepth
all individuals: 286
bin: 8.25e1
variant carriers: 3

GenotypeDepth
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 887
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 27744
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 353
bin: 7.75e1
variant carriers: 10

GenotypeDepth
all individuals: 416
bin: 7.25e1
variant carriers: 2

GenotypeDepth
all individuals: 272
bin: 8.75e1
variant carriers: 5

GenotypeDepth
all individuals: 206
bin: 9.25e1
variant carriers: 9

GenotypeDepth
all individuals: 537
bin: 6.25e1
variant carriers: 3

GenotypeDepth
all individuals: 513
bin: 6.75e1
variant carriers: 4

GenotypeDepth
all individuals: 3178
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40226
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8249
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 530
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 43
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5062
bin: 9.75e1
variant carriers: 175

GenotypeQuality
all individuals: 1933
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1924
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1112
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 15
allele frequency: 2.331364625427417e-3
allele num: 6434
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 33
allele frequency: 3.230859604464461e-3
allele num: 10214
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.232142857142857e-3
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.733402669440111e-4
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 130
allele frequency: 1.962145681770157e-3
allele num: 66254
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.73e-1

FS
type: SiteQuality
SIO_000300: 1.19346e2

MQ
type: SiteQuality
SIO_000300: 5.939e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.349e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

QD
type: SiteQuality
SIO_000300: 1.5e0

VQSLOD
type: SiteQuality
SIO_000300: -6.540000000000001e1

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

DP
type: SiteQuality
SIO_000300: 2.022995e6

Annotation
canonical: false
clinical significance: benign
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454352
ensembl transcript: ENST00000569357
gene symbol: TCF4
hgvsc: ENST00000569357.1:c.233-14G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
clinical significance: benign
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000346440
ensembl transcript: ENST00000354452
gene symbol: TCF4
hgvsc: ENST00000354452.3:c.305-14G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
clinical significance: benign
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000439656
ensembl transcript: ENST00000543082
gene symbol: TCF4
hgvsc: ENST00000543082.1:c.179-14G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
clinical significance: benign
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000440731
ensembl transcript: ENST00000537578
gene symbol: TCF4
hgvsc: ENST00000537578.1:c.233-14G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
clinical significance: benign
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000441562
ensembl transcript: ENST00000544241
gene symbol: TCF4
hgvsc: ENST00000544241.2:c.95-14G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
clinical significance: benign
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.305-14G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
clinical significance: benign
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000563686
gene symbol: TCF4
hgvsc: ENST00000563686.1:n.167-14G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
clinical significance: benign
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457747
ensembl transcript: ENST00000563888
gene symbol: TCF4
hgvsc: ENST00000563888.2:c.233-14G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
clinical significance: benign
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.305-14G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
clinical significance: benign
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455418
ensembl transcript: ENST00000566286
gene symbol: TCF4
hgvsc: ENST00000566286.1:c.299-14G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
clinical significance: benign
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456983
ensembl transcript: ENST00000566514
gene symbol: TCF4
hgvsc: ENST00000566514.1:c.233-14G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
clinical significance: benign
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-14G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
clinical significance: benign
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.233-14G>A
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 12932
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 242
bin: 8.25e1
variant carriers: 3

GenotypeDepth
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1154
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 670
bin: 9.75e1
variant carriers: 40

GenotypeDepth
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 736
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 296
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 500
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 221
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1827
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3225
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 372
bin: 7.25e1
variant carriers: 2

GenotypeDepth
all individuals: 8687
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 469
bin: 6.75e1
variant carriers: 3

GenotypeDepth
all individuals: 848
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28246
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 171
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8396
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1949
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1963
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40937
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4894
bin: 9.75e1
variant carriers: 51

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.496926260233305e-5
allele num: 66694
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 9.512279488066413e-4
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 1.730103806228374e-3
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 9.69227041434456e-4
allele num: 16508
num of homozygotes: 1

East Asian
type: Population
allele count: 2
allele frequency: 2.313743637204998e-4
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.358e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.5e0

FS
type: SiteQuality
SIO_000300: 7.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e0

DP
type: SiteQuality
SIO_000300: 1.948258e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.64e-2

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.43e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.305-15C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000441562
ensembl transcript: ENST00000544241
gene symbol: TCF4
hgvsc: ENST00000544241.2:c.95-15C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457392
ensembl transcript: ENST00000568169
gene symbol: TCF4
hgvsc: ENST00000568169.1:c.317-15C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454352
ensembl transcript: ENST00000569357
gene symbol: TCF4
hgvsc: ENST00000569357.1:c.233-15C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.234-15C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000440731
ensembl transcript: ENST00000537578
gene symbol: TCF4
hgvsc: ENST00000537578.1:c.233-15C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457113
ensembl transcript: ENST00000563824
gene symbol: TCF4
hgvsc: ENST00000563824.1:c.233-15C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454328
ensembl transcript: ENST00000564343
gene symbol: TCF4
hgvsc: ENST00000564343.1:c.233-15C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-86-15C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000346440
ensembl transcript: ENST00000354452
gene symbol: TCF4
hgvsc: ENST00000354452.3:c.305-15C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000563686
gene symbol: TCF4
hgvsc: ENST00000563686.1:n.167-15C>T
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 630
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 736
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 371
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3228
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 849
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 500
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12939
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8689
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 468
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 171
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28266
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1155
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1831
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 295
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 240
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8403
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40953
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4851
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.436e0

FS
type: SiteQuality
SIO_000300: 4.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-2

QD
type: SiteQuality
SIO_000300: 1.374e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

DP
type: SiteQuality
SIO_000300: 1.942738e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455261
ensembl transcript: ENST00000564228
gene symbol: TCF4
hgvsc: ENST00000564228.1:c.95-20T>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.305-20T>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.305-20T>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000346440
ensembl transcript: ENST00000354452
gene symbol: TCF4
hgvsc: ENST00000354452.3:c.305-20T>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455418
ensembl transcript: ENST00000566286
gene symbol: TCF4
hgvsc: ENST00000566286.1:c.299-20T>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-20T>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455179
ensembl transcript: ENST00000561992
gene symbol: TCF4
hgvsc: ENST00000561992.1:c.-86-20T>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455346
ensembl transcript: ENST00000568740
gene symbol: TCF4
hgvsc: ENST00000568740.1:c.233-20T>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000441562
ensembl transcript: ENST00000544241
gene symbol: TCF4
hgvsc: ENST00000544241.2:c.95-20T>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000445202
ensembl transcript: ENST00000540999
gene symbol: TCF4
hgvsc: ENST00000540999.1:c.233-20T>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.305-20T>G
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 80
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1154
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 500
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 468
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28244
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 847
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8685
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3224
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12918
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1828
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 371
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 171
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 629
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 239
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 736
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 295
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4850
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 534
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40914
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8390
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1948
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1961
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.471e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.771e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 1.941459e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e0

MQ
type: SiteQuality
SIO_000300: 5.924e1

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-86-21T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.305-21T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454352
ensembl transcript: ENST00000569357
gene symbol: TCF4
hgvsc: ENST00000569357.1:c.233-21T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000439656
ensembl transcript: ENST00000543082
gene symbol: TCF4
hgvsc: ENST00000543082.1:c.179-21T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-21T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457245
ensembl transcript: ENST00000566777
gene symbol: TCF4
hgvsc: ENST00000566777.1:c.-86-21T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.305-21T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.234-21T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455179
ensembl transcript: ENST00000561992
gene symbol: TCF4
hgvsc: ENST00000561992.1:c.-86-21T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455418
ensembl transcript: ENST00000566286
gene symbol: TCF4
hgvsc: ENST00000566286.1:c.299-21T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457113
ensembl transcript: ENST00000563824
gene symbol: TCF4
hgvsc: ENST00000563824.1:c.233-21T>C
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 81
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 847
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 500
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 239
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 736
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 468
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28244
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8686
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3223
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1154
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 371
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 295
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12919
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 171
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 628
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1827
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40917
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1961
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8391
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4849
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 785
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.3e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

FS
type: SiteQuality
SIO_000300: 1.83e0

QD
type: SiteQuality
SIO_000300: 1.379e1

MQRankSum
type: SiteQuality
SIO_000300: 7.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.941453e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.87e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.305-24C>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457649
ensembl transcript: ENST00000564999
gene symbol: TCF4
hgvsc: ENST00000564999.1:c.305-24C>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457747
ensembl transcript: ENST00000563888
gene symbol: TCF4
hgvsc: ENST00000563888.2:c.233-24C>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455179
ensembl transcript: ENST00000561992
gene symbol: TCF4
hgvsc: ENST00000561992.1:c.-86-24C>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454352
ensembl transcript: ENST00000569357
gene symbol: TCF4
hgvsc: ENST00000569357.1:c.233-24C>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.305-24C>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455346
ensembl transcript: ENST00000568740
gene symbol: TCF4
hgvsc: ENST00000568740.1:c.233-24C>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-24C>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000346440
ensembl transcript: ENST00000354452
gene symbol: TCF4
hgvsc: ENST00000354452.3:c.305-24C>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000441562
ensembl transcript: ENST00000544241
gene symbol: TCF4
hgvsc: ENST00000544241.2:c.95-24C>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455418
ensembl transcript: ENST00000566286
gene symbol: TCF4
hgvsc: ENST00000566286.1:c.299-24C>G
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 8681
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 295
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 845
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 500
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 127
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12888
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 171
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 28214
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1812
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 468
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 371
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 70
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 239
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1150
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3202
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 735
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 627
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40843
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1955
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8345
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4847
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 534
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1936
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001020346917952e-5
allele num: 66644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

FS
type: SiteQuality
SIO_000300: 7.94e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.19e-1

DP
type: SiteQuality
SIO_000300: 1.938847e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.069e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.25e-1

QD
type: SiteQuality
SIO_000300: 1.474e1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000563686
gene symbol: TCF4
hgvsc: ENST00000563686.1:n.167-27A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000445202
ensembl transcript: ENST00000540999
gene symbol: TCF4
hgvsc: ENST00000540999.1:c.233-27A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457747
ensembl transcript: ENST00000563888
gene symbol: TCF4
hgvsc: ENST00000563888.2:c.233-27A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.305-27A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457113
ensembl transcript: ENST00000563824
gene symbol: TCF4
hgvsc: ENST00000563824.1:c.233-27A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000441562
ensembl transcript: ENST00000544241
gene symbol: TCF4
hgvsc: ENST00000544241.2:c.95-27A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.305-27A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000439656
ensembl transcript: ENST00000543082
gene symbol: TCF4
hgvsc: ENST00000543082.1:c.179-27A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457649
ensembl transcript: ENST00000564999
gene symbol: TCF4
hgvsc: ENST00000564999.1:c.305-27A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.305-27A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457392
ensembl transcript: ENST00000568169
gene symbol: TCF4
hgvsc: ENST00000568169.1:c.317-27A>C
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 3186
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1810
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 371
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 734
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 625
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 295
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12873
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8686
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1147
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 142
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 171
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 468
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 239
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28213
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 85
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 500
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 845
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 82
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8344
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1934
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1953
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40827
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4844
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500510173458976e-5
allele num: 66644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.062e0

MQRankSum
type: SiteQuality
SIO_000300: -3.91e-1

FS
type: SiteQuality
SIO_000300: 6.148e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.88e0

VQSLOD
type: SiteQuality
SIO_000300: 3.23e-1

DP
type: SiteQuality
SIO_000300: 1.937703e6

MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.568e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457747
ensembl transcript: ENST00000563888
gene symbol: TCF4
hgvsc: ENST00000563888.2:c.233-30T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455179
ensembl transcript: ENST00000561992
gene symbol: TCF4
hgvsc: ENST00000561992.1:c.-86-30T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.305-30T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000441562
ensembl transcript: ENST00000544241
gene symbol: TCF4
hgvsc: ENST00000544241.2:c.95-30T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000440731
ensembl transcript: ENST00000537578
gene symbol: TCF4
hgvsc: ENST00000537578.1:c.233-30T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.233-30T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455418
ensembl transcript: ENST00000566286
gene symbol: TCF4
hgvsc: ENST00000566286.1:c.299-30T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455261
ensembl transcript: ENST00000564228
gene symbol: TCF4
hgvsc: ENST00000564228.1:c.95-30T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000445202
ensembl transcript: ENST00000540999
gene symbol: TCF4
hgvsc: ENST00000540999.1:c.233-30T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000346440
ensembl transcript: ENST00000354452
gene symbol: TCF4
hgvsc: ENST00000354452.3:c.305-30T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454352
ensembl transcript: ENST00000569357
gene symbol: TCF4
hgvsc: ENST00000569357.1:c.233-30T>C
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 468
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8690
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 371
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 101
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 28193
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 845
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 295
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3176
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 734
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 624
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1146
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 239
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12847
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1803
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 171
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 500
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1934
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1953
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4843
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8340
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40771
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500915558490679e-5
allele num: 66626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.140000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 5.12e0

DP
type: SiteQuality
SIO_000300: 1.936259e6

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

QD
type: SiteQuality
SIO_000300: 1.573e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.233-34A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455418
ensembl transcript: ENST00000566286
gene symbol: TCF4
hgvsc: ENST00000566286.1:c.299-34A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000563686
gene symbol: TCF4
hgvsc: ENST00000563686.1:n.167-34A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457113
ensembl transcript: ENST00000563824
gene symbol: TCF4
hgvsc: ENST00000563824.1:c.233-34A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455163
ensembl transcript: ENST00000568147
gene symbol: TCF4
hgvsc: ENST00000568147.1:c.233-34A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.305-34A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457245
ensembl transcript: ENST00000566777
gene symbol: TCF4
hgvsc: ENST00000566777.1:c.-86-34A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.305-34A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-34A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000445202
ensembl transcript: ENST00000540999
gene symbol: TCF4
hgvsc: ENST00000540999.1:c.233-34A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457649
ensembl transcript: ENST00000564999
gene symbol: TCF4
hgvsc: ENST00000564999.1:c.305-34A>G
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 174
bin: 9.25e1
variant carriers: 3

GenotypeDepth
all individuals: 195
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 371
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1133
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 281
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12717
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1761
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 8766
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 468
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 620
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 239
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 28142
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 733
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3087
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 500
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 295
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 836
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1122
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4842
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1945
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40480
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1920
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8272
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.654384117912468e-4
allele num: 66490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

MQ
type: SiteQuality
SIO_000300: 5.977e1

DP
type: SiteQuality
SIO_000300: 1.928882e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.584e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.21e0

QD
type: SiteQuality
SIO_000300: 1.339e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-86-35C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.233-35C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.305-35C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455418
ensembl transcript: ENST00000566286
gene symbol: TCF4
hgvsc: ENST00000566286.1:c.299-35C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455163
ensembl transcript: ENST00000568147
gene symbol: TCF4
hgvsc: ENST00000568147.1:c.233-35C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.234-35C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-35C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000563686
gene symbol: TCF4
hgvsc: ENST00000563686.1:n.167-35C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455346
ensembl transcript: ENST00000568740
gene symbol: TCF4
hgvsc: ENST00000568740.1:c.233-35C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455179
ensembl transcript: ENST00000561992
gene symbol: TCF4
hgvsc: ENST00000561992.1:c.-86-35C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454352
ensembl transcript: ENST00000569357
gene symbol: TCF4
hgvsc: ENST00000569357.1:c.233-35C>T
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 617
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8773
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 285
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12714
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1134
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28146
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 171
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 371
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 294
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 733
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3086
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1758
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 196
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 139
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 836
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 467
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 238
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 500
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4832
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1919
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8269
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40502
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1945
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e-1

FS
type: SiteQuality
SIO_000300: 1.557e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-3

MQ
type: SiteQuality
SIO_000300: 5.948e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.111e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

DP
type: SiteQuality
SIO_000300: 1.928109e6

QD
type: SiteQuality
SIO_000300: 9.19e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000441562
ensembl transcript: ENST00000544241
gene symbol: TCF4
hgvsc: ENST00000544241.2:c.95-38A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.305-38A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-38A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.305-38A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455418
ensembl transcript: ENST00000566286
gene symbol: TCF4
hgvsc: ENST00000566286.1:c.299-38A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455163
ensembl transcript: ENST00000568147
gene symbol: TCF4
hgvsc: ENST00000568147.1:c.233-38A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455346
ensembl transcript: ENST00000568740
gene symbol: TCF4
hgvsc: ENST00000568740.1:c.233-38A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000563686
gene symbol: TCF4
hgvsc: ENST00000563686.1:n.167-38A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455261
ensembl transcript: ENST00000564228
gene symbol: TCF4
hgvsc: ENST00000564228.1:c.95-38A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.305-38A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000440731
ensembl transcript: ENST00000537578
gene symbol: TCF4
hgvsc: ENST00000537578.1:c.233-38A>G
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 8794
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 154
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 12623
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 376
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 295
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 28126
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1125
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 221
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 733
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1729
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 832
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 371
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 466
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 238
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 171
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 501
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 3000
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 616
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40258
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1122
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4832
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8229
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1945
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1914
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.52147701582517e-5
allele num: 66350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 6.137e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e0

VQSLOD
type: SiteQuality
SIO_000300: 4.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.62e-1

QD
type: SiteQuality
SIO_000300: 1.549e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.94e-1

DP
type: SiteQuality
SIO_000300: 1.922172e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457113
ensembl transcript: ENST00000563824
gene symbol: TCF4
hgvsc: ENST00000563824.1:c.233-42G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.234-42G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.305-42G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000440731
ensembl transcript: ENST00000537578
gene symbol: TCF4
hgvsc: ENST00000537578.1:c.233-42G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454352
ensembl transcript: ENST00000569357
gene symbol: TCF4
hgvsc: ENST00000569357.1:c.233-42G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455163
ensembl transcript: ENST00000568147
gene symbol: TCF4
hgvsc: ENST00000568147.1:c.233-42G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000441562
ensembl transcript: ENST00000544241
gene symbol: TCF4
hgvsc: ENST00000544241.2:c.95-42G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.305-42G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455179
ensembl transcript: ENST00000561992
gene symbol: TCF4
hgvsc: ENST00000561992.1:c.-86-42G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.233-42G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-42G>A
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 1118
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 221
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 466
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28095
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 500
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8823
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 616
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 294
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2909
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 435
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 829
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 487
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1693
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 728
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 372
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 171
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12487
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 238
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4824
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1937
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1906
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39917
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8168
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512538947877908e-5
allele num: 66114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 1.914637e6

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

QD
type: SiteQuality
SIO_000300: 1.539e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.451e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454328
ensembl transcript: ENST00000564343
gene symbol: TCF4
hgvsc: ENST00000564343.1:c.233-45dupT
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-86-45dupT
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455418
ensembl transcript: ENST00000566286
gene symbol: TCF4
hgvsc: ENST00000566286.1:c.299-45dupT
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457392
ensembl transcript: ENST00000568169
gene symbol: TCF4
hgvsc: ENST00000568169.1:c.317-45dupT
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457245
ensembl transcript: ENST00000566777
gene symbol: TCF4
hgvsc: ENST00000566777.1:c.-86-45dupT
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000440731
ensembl transcript: ENST00000537578
gene symbol: TCF4
hgvsc: ENST00000537578.1:c.233-45dupT
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.305-45dupT
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455261
ensembl transcript: ENST00000564228
gene symbol: TCF4
hgvsc: ENST00000564228.1:c.95-45dupT
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.305-45dupT
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455346
ensembl transcript: ENST00000568740
gene symbol: TCF4
hgvsc: ENST00000568740.1:c.233-45dupT
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000381382
ensembl transcript: ENST00000398339
gene symbol: TCF4
hgvsc: ENST00000398339.1:c.611-45dupT
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 8842
bin: 2.25e1
variant carriers: 6

GenotypeDepth
all individuals: 218
bin: 1.75e1
variant carriers: 4

GenotypeDepth
all individuals: 12402
bin: 3.25e1
variant carriers: 9

GenotypeDepth
all individuals: 548
bin: 7.5e0
variant carriers: 4

GenotypeDepth
all individuals: 159
bin: 9.25e1
variant carriers: 5

GenotypeDepth
all individuals: 670
bin: 5.75e1
variant carriers: 7

GenotypeDepth
all individuals: 28140
bin: 2.75e1
variant carriers: 9

GenotypeDepth
all individuals: 477
bin: 6.25e1
variant carriers: 11

GenotypeDepth
all individuals: 284
bin: 7.75e1
variant carriers: 5

GenotypeDepth
all individuals: 1105
bin: 4.75e1
variant carriers: 18

GenotypeDepth
all individuals: 609
bin: 1.25e1
variant carriers: 2

GenotypeDepth
all individuals: 2951
bin: 3.75e1
variant carriers: 17

GenotypeDepth
all individuals: 50
bin: 2.5e0
variant carriers: 1

GenotypeDepth
all individuals: 782
bin: 5.25e1
variant carriers: 13

GenotypeDepth
all individuals: 214
bin: 8.25e1
variant carriers: 6

GenotypeDepth
all individuals: 324
bin: 7.25e1
variant carriers: 3

GenotypeDepth
all individuals: 1679
bin: 4.25e1
variant carriers: 12

GenotypeDepth
all individuals: 203
bin: 8.75e1
variant carriers: 2

GenotypeDepth
all individuals: 422
bin: 6.75e1
variant carriers: 10

GenotypeDepth
all individuals: 624
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 1774
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 39514
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 422
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 415
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 257
bin: 7.5e0
variant carriers: 5

GenotypeQuality
all individuals: 1684
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2832
bin: 9.75e1
variant carriers: 133

GenotypeQuality
all individuals: 373
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 7918
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 490
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 350
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 196
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 407
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 848
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.312887408640947e-4
allele num: 64854
num of homozygotes: 0

East Asian
type: Population
allele count: 98
allele frequency: 1.18129218900675e-2
allele num: 8296
num of homozygotes: 0

South Asian
type: Population
allele count: 23
allele frequency: 1.420103729315881e-3
allele num: 16196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.952569169960474e-4
allele num: 10120
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.93e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

QD
type: SiteQuality
SIO_000300: 7.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

DP
type: SiteQuality
SIO_000300: 1.89986e6

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.234-45delT
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456125
ensembl transcript: ENST00000566279
gene symbol: TCF4
hgvsc: ENST00000566279.1:c.305-45delT
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000440731
ensembl transcript: ENST00000537578
gene symbol: TCF4
hgvsc: ENST00000537578.1:c.233-45delT
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455261
ensembl transcript: ENST00000564228
gene symbol: TCF4
hgvsc: ENST00000564228.1:c.95-45delT
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000445202
ensembl transcript: ENST00000540999
gene symbol: TCF4
hgvsc: ENST00000540999.1:c.233-45delT
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.305-45delT
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.305-45delT
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454352
ensembl transcript: ENST00000569357
gene symbol: TCF4
hgvsc: ENST00000569357.1:c.233-45delT
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.305-45delT
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.233-45delT
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000563686
gene symbol: TCF4
hgvsc: ENST00000563686.1:n.167-45delT
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 324
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 670
bin: 5.75e1
variant carriers: 2

GenotypeDepth
all individuals: 8842
bin: 2.25e1
variant carriers: 5

GenotypeDepth
all individuals: 12402
bin: 3.25e1
variant carriers: 11

GenotypeDepth
all individuals: 218
bin: 1.75e1
variant carriers: 7

GenotypeDepth
all individuals: 1105
bin: 4.75e1
variant carriers: 2

GenotypeDepth
all individuals: 609
bin: 1.25e1
variant carriers: 3

GenotypeDepth
all individuals: 284
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 548
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 624
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 782
bin: 5.25e1
variant carriers: 2

GenotypeDepth
all individuals: 159
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 422
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 214
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 477
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28140
bin: 2.75e1
variant carriers: 13

GenotypeDepth
all individuals: 1679
bin: 4.25e1
variant carriers: 3

GenotypeDepth
all individuals: 2951
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 257
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 407
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 373
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 407
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 164
bin: 1.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1362
bin: 2.25e1
variant carriers: 8

GenotypeQuality
all individuals: 422
bin: 3.75e1
variant carriers: 7

GenotypeQuality
all individuals: 415
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1774
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1684
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 196
bin: 1.25e1
variant carriers: 7

GenotypeQuality
all individuals: 350
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 282
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7918
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39514
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2832
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 6
allele frequency: 5.351409204423831e-4
allele num: 11212
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.704618424302297e-4
allele num: 16196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.976284584980237e-4
allele num: 10120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.410800385728062e-4
allele num: 8296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.775464890369137e-4
allele num: 64854
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.89986e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.93e0

QD
type: SiteQuality
SIO_000300: 7.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.54e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000563686
gene symbol: TCF4
hgvsc: ENST00000563686.1:n.167-47T>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.305-47T>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455163
ensembl transcript: ENST00000568147
gene symbol: TCF4
hgvsc: ENST00000568147.1:c.233-47T>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-47T>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.234-47T>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.305-47T>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457747
ensembl transcript: ENST00000563888
gene symbol: TCF4
hgvsc: ENST00000563888.2:c.233-47T>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.305-47T>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.233-47T>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454352
ensembl transcript: ENST00000569357
gene symbol: TCF4
hgvsc: ENST00000569357.1:c.233-47T>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454328
ensembl transcript: ENST00000564343
gene symbol: TCF4
hgvsc: ENST00000564343.1:c.233-47T>G
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 775
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 818
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9667
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 65
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 967
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 138
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2457
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 445
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12839
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 177
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 217
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30555
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 143
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 159
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 478
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8216
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1723
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42893
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1652
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2674
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 78
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1475
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521467912241731e-5
allele num: 65726
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.855e-1

DP
type: SiteQuality
SIO_000300: 1.775961e6

FS
type: SiteQuality
SIO_000300: 3.291e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.72e0

QD
type: SiteQuality
SIO_000300: 1.395e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.31e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000445202
ensembl transcript: ENST00000540999
gene symbol: TCF4
hgvsc: ENST00000540999.1:c.233-54delA
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457392
ensembl transcript: ENST00000568169
gene symbol: TCF4
hgvsc: ENST00000568169.1:c.317-54delA
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.305-54delA
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000346440
ensembl transcript: ENST00000354452
gene symbol: TCF4
hgvsc: ENST00000354452.3:c.305-54delA
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457649
ensembl transcript: ENST00000564999
gene symbol: TCF4
hgvsc: ENST00000564999.1:c.305-54delA
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454352
ensembl transcript: ENST00000569357
gene symbol: TCF4
hgvsc: ENST00000569357.1:c.233-54delA
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456983
ensembl transcript: ENST00000566514
gene symbol: TCF4
hgvsc: ENST00000566514.1:c.233-54delA
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457113
ensembl transcript: ENST00000563824
gene symbol: TCF4
hgvsc: ENST00000563824.1:c.233-54delA
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000441562
ensembl transcript: ENST00000544241
gene symbol: TCF4
hgvsc: ENST00000544241.2:c.94+49delA
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.233-54delA
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455179
ensembl transcript: ENST00000561992
gene symbol: TCF4
hgvsc: ENST00000561992.1:c.-86-54delA
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 478
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 138
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 29989
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 159
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 159
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1324
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 138
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2332
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 948
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12271
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 143
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1383
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9654
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 216
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 427
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2468
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2669
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7984
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1684
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1631
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41649
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16360
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10082
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53950366401872e-5
allele num: 64956
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.67e0

MQRankSum
type: SiteQuality
SIO_000300: -3.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.387e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.748778e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

QD
type: SiteQuality
SIO_000300: 1.51e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.015e0

MQ
type: SiteQuality
SIO_000300: 6.024e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.002e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.305-55G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457392
ensembl transcript: ENST00000568169
gene symbol: TCF4
hgvsc: ENST00000568169.1:c.317-55G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-86-55G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455418
ensembl transcript: ENST00000566286
gene symbol: TCF4
hgvsc: ENST00000566286.1:c.299-55G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.234-55G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000441562
ensembl transcript: ENST00000544241
gene symbol: TCF4
hgvsc: ENST00000544241.2:c.94+48G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454328
ensembl transcript: ENST00000564343
gene symbol: TCF4
hgvsc: ENST00000564343.1:c.233-55G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000381382
ensembl transcript: ENST00000398339
gene symbol: TCF4
hgvsc: ENST00000398339.1:c.611-55G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.305-55G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000563686
gene symbol: TCF4
hgvsc: ENST00000563686.1:n.167-55G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455163
ensembl transcript: ENST00000568147
gene symbol: TCF4
hgvsc: ENST00000568147.1:c.233-55G>T
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 29843
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 159
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 137
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 159
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 355
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 159
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1621
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 408
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 165
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 11991
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1563
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2200
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 209
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9735
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 478
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 892
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 141
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41232
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1651
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2653
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2908
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7884
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1585
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11260
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8156
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.992817238627295e-4
allele num: 10024
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-2

DP
type: SiteQuality
SIO_000300: 1.734515e6

FS
type: SiteQuality
SIO_000300: 3.805e0

VQSLOD
type: SiteQuality
SIO_000300: 9.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.354e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

QD
type: SiteQuality
SIO_000300: 1.345e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455261
ensembl transcript: ENST00000564228
gene symbol: TCF4
hgvsc: ENST00000564228.1:c.94+45G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000441562
ensembl transcript: ENST00000544241
gene symbol: TCF4
hgvsc: ENST00000544241.2:c.94+45G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.233-58G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.305-58G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457113
ensembl transcript: ENST00000563824
gene symbol: TCF4
hgvsc: ENST00000563824.1:c.233-58G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456983
ensembl transcript: ENST00000566514
gene symbol: TCF4
hgvsc: ENST00000566514.1:c.233-58G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000445202
ensembl transcript: ENST00000540999
gene symbol: TCF4
hgvsc: ENST00000540999.1:c.233-58G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.234-58G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457392
ensembl transcript: ENST00000568169
gene symbol: TCF4
hgvsc: ENST00000568169.1:c.317-58G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-58G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.305-58G>A
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 2034
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 11459
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2053
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 413
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 397
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 141
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 209
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 135
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 220
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 9862
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 29489
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2000
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 159
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 477
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 848
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40195
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3695
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1621
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1562
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2650
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 159
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7743
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563868384836732e-5
allele num: 63944
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16242
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.934e1

VQSLOD
type: SiteQuality
SIO_000300: -1.077e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.14e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.526e0

MQRankSum
type: SiteQuality
SIO_000300: -2.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

DP
type: SiteQuality
SIO_000300: 1.71056e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456125
ensembl transcript: ENST00000566279
gene symbol: TCF4
hgvsc: ENST00000566279.1:c.305-64C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454352
ensembl transcript: ENST00000569357
gene symbol: TCF4
hgvsc: ENST00000569357.1:c.233-64C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.233-64C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.305-64C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455163
ensembl transcript: ENST00000568147
gene symbol: TCF4
hgvsc: ENST00000568147.1:c.233-64C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000563686
gene symbol: TCF4
hgvsc: ENST00000563686.1:n.167-64C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457392
ensembl transcript: ENST00000568169
gene symbol: TCF4
hgvsc: ENST00000568169.1:c.317-64C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-64C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000440731
ensembl transcript: ENST00000537578
gene symbol: TCF4
hgvsc: ENST00000537578.1:c.233-64C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457113
ensembl transcript: ENST00000563824
gene symbol: TCF4
hgvsc: ENST00000563824.1:c.233-64C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455346
ensembl transcript: ENST00000568740
gene symbol: TCF4
hgvsc: ENST00000568740.1:c.233-64C>T
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 386
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28760
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 477
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10723
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 134
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10078
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 159
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 291
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2696
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 528
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 208
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2682
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 793
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1836
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7588
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39199
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2635
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1509
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1559
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4860
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.585137748470342e-5
allele num: 63086
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11012
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7962
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.545e0

MQRankSum
type: SiteQuality
SIO_000300: 5.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.034e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

FS
type: SiteQuality
SIO_000300: 1.368e0

DP
type: SiteQuality
SIO_000300: 1.677643e6

QD
type: SiteQuality
SIO_000300: 1.407e1

VQSLOD
type: SiteQuality
SIO_000300: 7.24e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.305-70C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.305-70C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455418
ensembl transcript: ENST00000566286
gene symbol: TCF4
hgvsc: ENST00000566286.1:c.299-70C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-70C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000381382
ensembl transcript: ENST00000398339
gene symbol: TCF4
hgvsc: ENST00000398339.1:c.611-70C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455261
ensembl transcript: ENST00000564228
gene symbol: TCF4
hgvsc: ENST00000564228.1:c.94+33C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-86-70C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.234-70C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.305-70C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456983
ensembl transcript: ENST00000566514
gene symbol: TCF4
hgvsc: ENST00000566514.1:c.233-70C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455346
ensembl transcript: ENST00000568740
gene symbol: TCF4
hgvsc: ENST00000568740.1:c.233-70C>T
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9922
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1758
bin: 3.75e1
variant carriers: 3

GenotypeDepth
all individuals: 3768
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 477
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 460
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 135
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 776
bin: 4.25e1
variant carriers: 3

GenotypeDepth
all individuals: 9963
bin: 3.25e1
variant carriers: 5

GenotypeDepth
all individuals: 382
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 815
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 27081
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3841
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 159
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 206
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2637
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 72
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36930
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7097
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6861
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1423
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1476
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.276052674361892e-4
allele num: 61510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7746
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15864
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.482e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.22e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

DP
type: SiteQuality
SIO_000300: 1.627496e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000441562
ensembl transcript: ENST00000544241
gene symbol: TCF4
hgvsc: ENST00000544241.2:c.94+29A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454328
ensembl transcript: ENST00000564343
gene symbol: TCF4
hgvsc: ENST00000564343.1:c.233-74A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000381382
ensembl transcript: ENST00000398339
gene symbol: TCF4
hgvsc: ENST00000398339.1:c.611-74A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.305-74A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000346440
ensembl transcript: ENST00000354452
gene symbol: TCF4
hgvsc: ENST00000354452.3:c.305-74A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456983
ensembl transcript: ENST00000566514
gene symbol: TCF4
hgvsc: ENST00000566514.1:c.233-74A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455179
ensembl transcript: ENST00000561992
gene symbol: TCF4
hgvsc: ENST00000561992.1:c.-86-74A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455418
ensembl transcript: ENST00000566286
gene symbol: TCF4
hgvsc: ENST00000566286.1:c.299-74A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457113
ensembl transcript: ENST00000563824
gene symbol: TCF4
hgvsc: ENST00000563824.1:c.233-74A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.305-74A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.233-74A>G
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 562
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 9581
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4606
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1729
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 159
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 998
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9539
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4561
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 206
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 378
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 477
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 26045
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 763
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35427
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1363
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6905
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8252
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2617
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 398
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7628
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.27420998980632e-4
allele num: 15696
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9348
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.424e1

DP
type: SiteQuality
SIO_000300: 1.595076e6

VQSLOD
type: SiteQuality
SIO_000300: -4.109e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

MQ
type: SiteQuality
SIO_000300: 5.932e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457747
ensembl transcript: ENST00000563888
gene symbol: TCF4
hgvsc: ENST00000563888.2:c.233-75G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-75G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.305-75G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457113
ensembl transcript: ENST00000563824
gene symbol: TCF4
hgvsc: ENST00000563824.1:c.233-75G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455163
ensembl transcript: ENST00000568147
gene symbol: TCF4
hgvsc: ENST00000568147.1:c.233-75G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.233-75G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454328
ensembl transcript: ENST00000564343
gene symbol: TCF4
hgvsc: ENST00000564343.1:c.233-75G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000346440
ensembl transcript: ENST00000354452
gene symbol: TCF4
hgvsc: ENST00000354452.3:c.305-75G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000441562
ensembl transcript: ENST00000544241
gene symbol: TCF4
hgvsc: ENST00000544241.2:c.94+28G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.305-75G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454352
ensembl transcript: ENST00000569357
gene symbol: TCF4
hgvsc: ENST00000569357.1:c.233-75G>T
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 4569
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 378
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 476
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 26025
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4627
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 762
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 986
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 564
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 159
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9509
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9622
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 206
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1721
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8297
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1347
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6849
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2616
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 35640
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.368615462998345e-5
allele num: 15702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9342
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.28e-1

FS
type: SiteQuality
SIO_000300: 2.669e0

VQSLOD
type: SiteQuality
SIO_000300: -2.28e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.98e0

DP
type: SiteQuality
SIO_000300: 1.594123e6

MQRankSum
type: SiteQuality
SIO_000300: -9.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.581e1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000563686
gene symbol: TCF4
hgvsc: ENST00000563686.1:n.167-78G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.305-78G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454866
ensembl transcript: ENST00000562847
gene symbol: TCF4
hgvsc: ENST00000562847.1:c.68-78G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-86-78G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455179
ensembl transcript: ENST00000561992
gene symbol: TCF4
hgvsc: ENST00000561992.1:c.-86-78G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455418
ensembl transcript: ENST00000566286
gene symbol: TCF4
hgvsc: ENST00000566286.1:c.299-78G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.305-78G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.305-78G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457747
ensembl transcript: ENST00000563888
gene symbol: TCF4
hgvsc: ENST00000563888.2:c.233-78G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454328
ensembl transcript: ENST00000564343
gene symbol: TCF4
hgvsc: ENST00000564343.1:c.233-78G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.234-78G>A
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 9046
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 206
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 377
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1174
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 9102
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1702
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5759
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 674
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 24560
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 159
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 750
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5609
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 475
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1300
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2612
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 180
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6594
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10254
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33408
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.699177598042548e-5
allele num: 58852
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.17e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.421e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.069e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.551842e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-2

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454352
ensembl transcript: ENST00000569357
gene symbol: TCF4
hgvsc: ENST00000569357.1:c.233-82A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457649
ensembl transcript: ENST00000564999
gene symbol: TCF4
hgvsc: ENST00000564999.1:c.305-82A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-82A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.305-82A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.305-82A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457245
ensembl transcript: ENST00000566777
gene symbol: TCF4
hgvsc: ENST00000566777.1:c.-86-82A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.305-82A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.234-82A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455163
ensembl transcript: ENST00000568147
gene symbol: TCF4
hgvsc: ENST00000568147.1:c.233-82A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000439656
ensembl transcript: ENST00000543082
gene symbol: TCF4
hgvsc: ENST00000543082.1:c.179-82A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000563686
gene symbol: TCF4
hgvsc: ENST00000563686.1:n.167-82A>G
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 8403
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21574
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7830
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 206
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 475
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1589
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7728
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 377
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7966
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1555
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 973
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 736
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 159
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14120
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29374
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2609
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 569
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5390
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9424
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.140510948905109e-4
allele num: 8768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7112
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6060
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15142
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.957e1

VQSLOD
type: SiteQuality
SIO_000300: -1.424e0

QD
type: SiteQuality
SIO_000300: 2.063e1

MQRankSum
type: SiteQuality
SIO_000300: -1.37e-1

FS
type: SiteQuality
SIO_000300: 3.499e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.36e0

DP
type: SiteQuality
SIO_000300: 1.460442e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.305-84A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000563686
gene symbol: TCF4
hgvsc: ENST00000563686.1:n.167-84A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.305-84A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.233-84A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.305-84A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-84A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.305-84A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457113
ensembl transcript: ENST00000563824
gene symbol: TCF4
hgvsc: ENST00000563824.1:c.233-84A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.234-84A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457392
ensembl transcript: ENST00000568169
gene symbol: TCF4
hgvsc: ENST00000568169.1:c.317-84A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455163
ensembl transcript: ENST00000568147
gene symbol: TCF4
hgvsc: ENST00000568147.1:c.233-84A>G
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 20149
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1466
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 159
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8305
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8732
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9053
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1773
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 475
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 205
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1121
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 376
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 722
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7020
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 134
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26944
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4740
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1200
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15984
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2609
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 971
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1150
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1111
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9026
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6944
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.170411985018727e-4
allele num: 8544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14960
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQ
type: SiteQuality
SIO_000300: 5.956e1

VQSLOD
type: SiteQuality
SIO_000300: -2.166e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-2

FS
type: SiteQuality
SIO_000300: 3.663e0

QD
type: SiteQuality
SIO_000300: 2.255e1

DP
type: SiteQuality
SIO_000300: 1.412756e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000439656
ensembl transcript: ENST00000543082
gene symbol: TCF4
hgvsc: ENST00000543082.1:c.179-86G>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455346
ensembl transcript: ENST00000568740
gene symbol: TCF4
hgvsc: ENST00000568740.1:c.233-86G>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.305-86G>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.305-86G>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000346440
ensembl transcript: ENST00000354452
gene symbol: TCF4
hgvsc: ENST00000354452.3:c.305-86G>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454328
ensembl transcript: ENST00000564343
gene symbol: TCF4
hgvsc: ENST00000564343.1:c.233-86G>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455179
ensembl transcript: ENST00000561992
gene symbol: TCF4
hgvsc: ENST00000561992.1:c.-86-86G>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000441562
ensembl transcript: ENST00000544241
gene symbol: TCF4
hgvsc: ENST00000544241.2:c.94+17G>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454352
ensembl transcript: ENST00000569357
gene symbol: TCF4
hgvsc: ENST00000569357.1:c.233-86G>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457245
ensembl transcript: ENST00000566777
gene symbol: TCF4
hgvsc: ENST00000566777.1:c.-86-86G>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000563686
gene symbol: TCF4
hgvsc: ENST00000563686.1:n.167-86G>C
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 205
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20130
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8729
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1756
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1125
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9108
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 375
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 718
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1445
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6887
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 8444
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 159
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 475
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2608
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 261
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4674
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16095
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1019
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27816
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6934
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9006
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.841620626151013e-5
allele num: 54300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5926
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14942
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.37e-1

QD
type: SiteQuality
SIO_000300: 1.345e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

DP
type: SiteQuality
SIO_000300: 1.410225e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455346
ensembl transcript: ENST00000568740
gene symbol: TCF4
hgvsc: ENST00000568740.1:c.233-89G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000441562
ensembl transcript: ENST00000544241
gene symbol: TCF4
hgvsc: ENST00000544241.2:c.94+14G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457113
ensembl transcript: ENST00000563824
gene symbol: TCF4
hgvsc: ENST00000563824.1:c.233-89G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000563686
gene symbol: TCF4
hgvsc: ENST00000563686.1:n.167-89G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.305-89G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000445202
ensembl transcript: ENST00000540999
gene symbol: TCF4
hgvsc: ENST00000540999.1:c.233-89G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457245
ensembl transcript: ENST00000566777
gene symbol: TCF4
hgvsc: ENST00000566777.1:c.-86-89G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455163
ensembl transcript: ENST00000568147
gene symbol: TCF4
hgvsc: ENST00000568147.1:c.233-89G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-86-89G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454328
ensembl transcript: ENST00000564343
gene symbol: TCF4
hgvsc: ENST00000564343.1:c.233-89G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.305-89G>A
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 373
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1332
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 159
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18827
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10134
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8477
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1828
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1317
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 9588
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 475
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 204
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 701
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6123
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4344
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1452
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2602
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 724
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1216
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17782
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26090
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1009
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.684832865913742e-5
allele num: 52772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.673e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

DP
type: SiteQuality
SIO_000300: 1.3659e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.82e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457747
ensembl transcript: ENST00000563888
gene symbol: TCF4
hgvsc: ENST00000563888.2:c.233-90C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455163
ensembl transcript: ENST00000568147
gene symbol: TCF4
hgvsc: ENST00000568147.1:c.233-90C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.305-90C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455179
ensembl transcript: ENST00000561992
gene symbol: TCF4
hgvsc: ENST00000561992.1:c.-86-90C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-90C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.233-90C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454352
ensembl transcript: ENST00000569357
gene symbol: TCF4
hgvsc: ENST00000569357.1:c.233-90C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.305-90C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-86-90C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456125
ensembl transcript: ENST00000566279
gene symbol: TCF4
hgvsc: ENST00000566279.1:c.305-90C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455346
ensembl transcript: ENST00000568740
gene symbol: TCF4
hgvsc: ENST00000568740.1:c.233-90C>T
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 159
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1837
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8563
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 371
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18416
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1262
bin: 3.75e1
variant carriers: 3

GenotypeDepth
all individuals: 10546
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1393
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 690
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5692
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 475
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 157
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9930
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1519
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4207
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18448
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25593
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2600
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 961
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.671653241273494e-5
allele num: 52140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5732
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.215066828675577e-4
allele num: 8230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6658
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14680
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.474e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.93e-1

FS
type: SiteQuality
SIO_000300: 1.181e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

QD
type: SiteQuality
SIO_000300: 1.317e1

DP
type: SiteQuality
SIO_000300: 1.347049e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454352
ensembl transcript: ENST00000569357
gene symbol: TCF4
hgvsc: ENST00000569357.1:c.233-90C>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-90C>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454866
ensembl transcript: ENST00000562847
gene symbol: TCF4
hgvsc: ENST00000562847.1:c.68-90C>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454328
ensembl transcript: ENST00000564343
gene symbol: TCF4
hgvsc: ENST00000564343.1:c.233-90C>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.305-90C>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457392
ensembl transcript: ENST00000568169
gene symbol: TCF4
hgvsc: ENST00000568169.1:c.317-90C>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457113
ensembl transcript: ENST00000563824
gene symbol: TCF4
hgvsc: ENST00000563824.1:c.233-90C>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455346
ensembl transcript: ENST00000568740
gene symbol: TCF4
hgvsc: ENST00000568740.1:c.233-90C>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000563686
gene symbol: TCF4
hgvsc: ENST00000563686.1:n.167-90C>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.234-90C>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000445202
ensembl transcript: ENST00000540999
gene symbol: TCF4
hgvsc: ENST00000540999.1:c.233-90C>G
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 1837
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9930
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1262
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18416
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 371
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5692
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 8563
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10546
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1393
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 475
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 159
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 690
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25593
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18448
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1519
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2600
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 961
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4207
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14680
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.917913310318374e-5
allele num: 52140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5732
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.97e-1

FS
type: SiteQuality
SIO_000300: 1.181e0

DP
type: SiteQuality
SIO_000300: 1.347049e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.474e0

QD
type: SiteQuality
SIO_000300: 1.317e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.305-102G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.233-102G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.305-102G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454866
ensembl transcript: ENST00000562847
gene symbol: TCF4
hgvsc: ENST00000562847.1:c.68-102G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457392
ensembl transcript: ENST00000568169
gene symbol: TCF4
hgvsc: ENST00000568169.1:c.317-102G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455179
ensembl transcript: ENST00000561992
gene symbol: TCF4
hgvsc: ENST00000561992.1:c.-86-102G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.234-102G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455346
ensembl transcript: ENST00000568740
gene symbol: TCF4
hgvsc: ENST00000568740.1:c.233-102G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.305-102G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000381382
ensembl transcript: ENST00000398339
gene symbol: TCF4
hgvsc: ENST00000398339.1:c.611-102G>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-86-102G>A
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 2582
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 368
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11831
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2263
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13944
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 673
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1065
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3590
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 474
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7210
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15044
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 159
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1554
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17304
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2777
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1684
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2595
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25954
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2821
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.198092056095309e-5
allele num: 45494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7216
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7024
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4998
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.155734e6

QD
type: SiteQuality
SIO_000300: 7.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.399999999999999e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.591e-1

Annotation
canonical: false
consequence: missense_variant
consequence: splice_region_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000441562
ensembl transcript: ENST00000544241
gene symbol: TCF4
hgvsc: ENST00000544241.2:c.94C>T
hgvsp: ENSP00000441562.2:p.Arg32Cys
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-103C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.305-103C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.305-103C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455163
ensembl transcript: ENST00000568147
gene symbol: TCF4
hgvsc: ENST00000568147.1:c.233-103C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000563686
gene symbol: TCF4
hgvsc: ENST00000563686.1:n.167-103C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456125
ensembl transcript: ENST00000566279
gene symbol: TCF4
hgvsc: ENST00000566279.1:c.305-103C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.233-103C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454328
ensembl transcript: ENST00000564343
gene symbol: TCF4
hgvsc: ENST00000564343.1:c.233-103C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457392
ensembl transcript: ENST00000568169
gene symbol: TCF4
hgvsc: ENST00000568169.1:c.317-103C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.234-103C>T
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 3455
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2728
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2247
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 7031
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11350
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15412
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 367
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14238
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 672
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 475
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 159
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1059
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 141
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2928
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16636
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26547
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1686
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2727
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2600
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 437
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.458151064450277e-4
allele num: 6858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7098
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4932
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5734
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44760
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.295e1

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.359e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

DP
type: SiteQuality
SIO_000300: 1.140589e6

FS
type: SiteQuality
SIO_000300: 6.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000563686
gene symbol: TCF4
hgvsc: ENST00000563686.1:n.167-103C>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: missense_variant
consequence: splice_region_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455261
ensembl transcript: ENST00000564228
gene symbol: TCF4
hgvsc: ENST00000564228.1:c.94C>A
hgvsp: ENSP00000455261.1:p.Arg32Ser
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455179
ensembl transcript: ENST00000561992
gene symbol: TCF4
hgvsc: ENST00000561992.1:c.-86-103C>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455163
ensembl transcript: ENST00000568147
gene symbol: TCF4
hgvsc: ENST00000568147.1:c.233-103C>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457113
ensembl transcript: ENST00000563824
gene symbol: TCF4
hgvsc: ENST00000563824.1:c.233-103C>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457392
ensembl transcript: ENST00000568169
gene symbol: TCF4
hgvsc: ENST00000568169.1:c.317-103C>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457649
ensembl transcript: ENST00000564999
gene symbol: TCF4
hgvsc: ENST00000564999.1:c.305-103C>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000439656
ensembl transcript: ENST00000543082
gene symbol: TCF4
hgvsc: ENST00000543082.1:c.179-103C>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000346440
ensembl transcript: ENST00000354452
gene symbol: TCF4
hgvsc: ENST00000354452.3:c.305-103C>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.305-103C>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457747
ensembl transcript: ENST00000563888
gene symbol: TCF4
hgvsc: ENST00000563888.2:c.233-103C>A
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 15412
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 475
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 7031
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14238
bin: 1.25e1
variant carriers: 2

GenotypeDepth
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 672
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 141
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 11350
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2247
bin: 1.75e1
variant carriers: 3

GenotypeDepth
all individuals: 158
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2728
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 367
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3455
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1059
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 157
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 159
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16636
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1686
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2727
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2928
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26547
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2600
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 501
bin: 8.25e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 1.458151064450277e-4
allele num: 6858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.787310098302055e-4
allele num: 44760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4932
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13662
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7098
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

FS
type: SiteQuality
SIO_000300: 6.35e-1

QD
type: SiteQuality
SIO_000300: 1.295e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.359e0

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.140589e6

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457113
ensembl transcript: ENST00000563824
gene symbol: TCF4
hgvsc: ENST00000563824.1:c.233-104A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457649
ensembl transcript: ENST00000564999
gene symbol: TCF4
hgvsc: ENST00000564999.1:c.305-104A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455418
ensembl transcript: ENST00000566286
gene symbol: TCF4
hgvsc: ENST00000566286.1:c.299-104A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455346
ensembl transcript: ENST00000568740
gene symbol: TCF4
hgvsc: ENST00000568740.1:c.233-104A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454328
ensembl transcript: ENST00000564343
gene symbol: TCF4
hgvsc: ENST00000564343.1:c.233-104A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456983
ensembl transcript: ENST00000566514
gene symbol: TCF4
hgvsc: ENST00000566514.1:c.233-104A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.234-104A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456125
ensembl transcript: ENST00000566279
gene symbol: TCF4
hgvsc: ENST00000566279.1:c.305-104A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455163
ensembl transcript: ENST00000568147
gene symbol: TCF4
hgvsc: ENST00000568147.1:c.233-104A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-86-104A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-104A>G
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 3325
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 367
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2902
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6831
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10874
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 668
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1051
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15827
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 159
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 474
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2142
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 14556
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1577
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3069
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1732
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2591
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 790
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27227
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2705
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16123
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44254
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.753155680224404e-4
allele num: 5704
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7054
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6782
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e0

QD
type: SiteQuality
SIO_000300: 7.85e0

VQSLOD
type: SiteQuality
SIO_000300: -7.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

DP
type: SiteQuality
SIO_000300: 1.123857e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454866
ensembl transcript: ENST00000562847
gene symbol: TCF4
hgvsc: ENST00000562847.1:c.68-109A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455346
ensembl transcript: ENST00000568740
gene symbol: TCF4
hgvsc: ENST00000568740.1:c.233-109A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455418
ensembl transcript: ENST00000566286
gene symbol: TCF4
hgvsc: ENST00000566286.1:c.299-109A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-86-109A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.305-109A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000445202
ensembl transcript: ENST00000540999
gene symbol: TCF4
hgvsc: ENST00000540999.1:c.233-109A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457649
ensembl transcript: ENST00000564999
gene symbol: TCF4
hgvsc: ENST00000564999.1:c.305-109A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000439656
ensembl transcript: ENST00000543082
gene symbol: TCF4
hgvsc: ENST00000543082.1:c.179-109A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.305-109A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455163
ensembl transcript: ENST00000568147
gene symbol: TCF4
hgvsc: ENST00000568147.1:c.233-109A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.305-109A>G
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 474
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3867
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 364
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1027
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2337
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8583
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17242
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 668
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 5593
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2871
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15894
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 171
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2420
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4076
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1944
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29344
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12553
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2591
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 283
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13210
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.505570611261668e-4
allele num: 6642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41276
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.79e-1

QD
type: SiteQuality
SIO_000300: 1.439e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.08e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.73e-1

DP
type: SiteQuality
SIO_000300: 1.050869e6

FS
type: SiteQuality
SIO_000300: 1.106e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000346440
ensembl transcript: ENST00000354452
gene symbol: TCF4
hgvsc: ENST00000354452.3:c.305-109A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457113
ensembl transcript: ENST00000563824
gene symbol: TCF4
hgvsc: ENST00000563824.1:c.233-109A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-86-109A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.233-109A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456983
ensembl transcript: ENST00000566514
gene symbol: TCF4
hgvsc: ENST00000566514.1:c.233-109A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000381382
ensembl transcript: ENST00000398339
gene symbol: TCF4
hgvsc: ENST00000398339.1:c.611-109A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456125
ensembl transcript: ENST00000566279
gene symbol: TCF4
hgvsc: ENST00000566279.1:c.305-109A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457392
ensembl transcript: ENST00000568169
gene symbol: TCF4
hgvsc: ENST00000568169.1:c.317-109A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454352
ensembl transcript: ENST00000569357
gene symbol: TCF4
hgvsc: ENST00000569357.1:c.233-109A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.234-109A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-109A>C
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 158
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2337
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15894
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3867
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2871
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17242
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 8583
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 668
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5593
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 474
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 1027
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 171
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 364
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1944
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12553
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4076
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29344
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2591
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 177
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2420
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 262
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6642
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.606683804627249e-4
allele num: 6224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5336
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.785011355034065e-4
allele num: 13210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41276
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.75e-1

FS
type: SiteQuality
SIO_000300: 1.106e0

VQSLOD
type: SiteQuality
SIO_000300: 6.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.08e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.439e1

DP
type: SiteQuality
SIO_000300: 1.050869e6

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.234-112C>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457245
ensembl transcript: ENST00000566777
gene symbol: TCF4
hgvsc: ENST00000566777.1:c.-86-112C>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-86-112C>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454352
ensembl transcript: ENST00000569357
gene symbol: TCF4
hgvsc: ENST00000569357.1:c.233-112C>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.305-112C>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455346
ensembl transcript: ENST00000568740
gene symbol: TCF4
hgvsc: ENST00000568740.1:c.233-112C>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.305-112C>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455418
ensembl transcript: ENST00000566286
gene symbol: TCF4
hgvsc: ENST00000566286.1:c.299-112C>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000381382
ensembl transcript: ENST00000398339
gene symbol: TCF4
hgvsc: ENST00000398339.1:c.611-112C>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000445202
ensembl transcript: ENST00000540999
gene symbol: TCF4
hgvsc: ENST00000540999.1:c.233-112C>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456983
ensembl transcript: ENST00000566514
gene symbol: TCF4
hgvsc: ENST00000566514.1:c.233-112C>A
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 156
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2371
bin: 1.75e1
variant carriers: 3

GenotypeDepth
all individuals: 5114
bin: 2.25e1
variant carriers: 2

GenotypeDepth
all individuals: 4605
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 18184
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 16308
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 365
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2523
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1007
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7226
bin: 2.75e1
variant carriers: 3

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 472
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 667
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10616
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2594
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 352
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4855
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30146
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1704
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1939
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1908
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38972
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12920
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.79140127388535e-3
allele num: 5024
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.825e0

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.005755e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.99e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.53e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.22e-2

QD
type: SiteQuality
SIO_000300: 1.252e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455346
ensembl transcript: ENST00000568740
gene symbol: TCF4
hgvsc: ENST00000568740.1:c.233-118G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455179
ensembl transcript: ENST00000561992
gene symbol: TCF4
hgvsc: ENST00000561992.1:c.-86-118G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000563686
gene symbol: TCF4
hgvsc: ENST00000563686.1:n.167-118G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455163
ensembl transcript: ENST00000568147
gene symbol: TCF4
hgvsc: ENST00000568147.1:c.233-118G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-86-118G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454352
ensembl transcript: ENST00000569357
gene symbol: TCF4
hgvsc: ENST00000569357.1:c.233-118G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-118G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457649
ensembl transcript: ENST00000564999
gene symbol: TCF4
hgvsc: ENST00000564999.1:c.305-118G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455984
ensembl transcript: ENST00000565018
gene symbol: TCF4
hgvsc: ENST00000565018.2:c.305-118G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455418
ensembl transcript: ENST00000566286
gene symbol: TCF4
hgvsc: ENST00000566286.1:c.299-118G>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.305-118G>T
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 5450
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19122
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4408
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 6256
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2064
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 472
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 364
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2327
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16627
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 664
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 995
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5762
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31559
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1929
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2585
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 350
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9686
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1785
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1632
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.699638248474704e-5
allele num: 37042
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4138
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12652
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.131e1

VQSLOD
type: SiteQuality
SIO_000300: 2.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.989e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.35e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.26e-1

DP
type: SiteQuality
SIO_000300: 9.64941e5

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.233-125A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455135
ensembl transcript: ENST00000568673
gene symbol: TCF4
hgvsc: ENST00000568673.1:c.233-125A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-125A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456125
ensembl transcript: ENST00000566279
gene symbol: TCF4
hgvsc: ENST00000566279.1:c.305-125A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-86-125A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457113
ensembl transcript: ENST00000563824
gene symbol: TCF4
hgvsc: ENST00000563824.1:c.233-125A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455163
ensembl transcript: ENST00000568147
gene symbol: TCF4
hgvsc: ENST00000568147.1:c.233-125A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457392
ensembl transcript: ENST00000568169
gene symbol: TCF4
hgvsc: ENST00000568169.1:c.317-125A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000346440
ensembl transcript: ENST00000354452
gene symbol: TCF4
hgvsc: ENST00000354452.3:c.305-125A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457245
ensembl transcript: ENST00000566777
gene symbol: TCF4
hgvsc: ENST00000566777.1:c.-86-125A>G
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.305-125A>G
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 2039
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 133
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 662
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16780
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3297
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4677
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 978
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 363
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7547
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1712
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19962
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 472
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7924
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 895
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1570
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32090
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7344
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2584
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 699
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.99060948621329e-5
allele num: 33438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12166
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.95331e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 1.274e1

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454866
ensembl transcript: ENST00000562847
gene symbol: TCF4
hgvsc: ENST00000562847.1:c.68-125A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454328
ensembl transcript: ENST00000564343
gene symbol: TCF4
hgvsc: ENST00000564343.1:c.233-125A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455163
ensembl transcript: ENST00000568147
gene symbol: TCF4
hgvsc: ENST00000568147.1:c.233-125A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.305-125A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-125A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.305-125A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.305-125A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455135
ensembl transcript: ENST00000568673
gene symbol: TCF4
hgvsc: ENST00000568673.1:c.233-125A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455418
ensembl transcript: ENST00000566286
gene symbol: TCF4
hgvsc: ENST00000566286.1:c.299-125A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.234-125A>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456983
ensembl transcript: ENST00000566514
gene symbol: TCF4
hgvsc: ENST00000566514.1:c.233-125A>C
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 19962
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 662
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1712
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3297
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7547
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2039
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 363
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16780
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 978
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 472
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4677
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32090
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 895
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7924
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1570
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7344
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2584
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 348
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3712
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4538
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.0e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.274e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.95331e5

ClippingRankSum
type: SiteQuality
SIO_000300: 4.66e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455418
ensembl transcript: ENST00000566286
gene symbol: TCF4
hgvsc: ENST00000566286.1:c.299-130C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.305-130C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.305-130C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455135
ensembl transcript: ENST00000568673
gene symbol: TCF4
hgvsc: ENST00000568673.1:c.233-130C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.233-130C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456125
ensembl transcript: ENST00000566279
gene symbol: TCF4
hgvsc: ENST00000566279.1:c.305-130C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-130C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-86-130C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457747
ensembl transcript: ENST00000563888
gene symbol: TCF4
hgvsc: ENST00000563888.2:c.233-130C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457113
ensembl transcript: ENST00000563824
gene symbol: TCF4
hgvsc: ENST00000563824.1:c.233-130C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.305-130C>T
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16200
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 967
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19927
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 363
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2372
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1710
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 156
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1889
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10022
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3600
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 661
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 472
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1284
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10519
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1369
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2583
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 152
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1908
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5290
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30455
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1530
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5000
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30004
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.555783709787816e-5
allele num: 11688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3294
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.552e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.766e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.07e0

DP
type: SiteQuality
SIO_000300: 8.39503e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455135
ensembl transcript: ENST00000568673
gene symbol: TCF4
hgvsc: ENST00000568673.1:c.233-132T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457747
ensembl transcript: ENST00000563888
gene symbol: TCF4
hgvsc: ENST00000563888.2:c.233-132T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455163
ensembl transcript: ENST00000568147
gene symbol: TCF4
hgvsc: ENST00000568147.1:c.233-132T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-132T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456125
ensembl transcript: ENST00000566279
gene symbol: TCF4
hgvsc: ENST00000566279.1:c.305-132T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454366
ensembl transcript: ENST00000567880
gene symbol: TCF4
hgvsc: ENST00000567880.1:c.305-132T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000445202
ensembl transcript: ENST00000540999
gene symbol: TCF4
hgvsc: ENST00000540999.1:c.233-132T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455346
ensembl transcript: ENST00000568740
gene symbol: TCF4
hgvsc: ENST00000568740.1:c.233-132T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455179
ensembl transcript: ENST00000561992
gene symbol: TCF4
hgvsc: ENST00000561992.1:c.-86-132T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454352
ensembl transcript: ENST00000569357
gene symbol: TCF4
hgvsc: ENST00000569357.1:c.233-132T>C
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.305-132T>C
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 1543
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1854
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 10510
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2309
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 965
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 20074
bin: 7.5e0
variant carriers: 3

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 472
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15935
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3449
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 363
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 661
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5220
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30703
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1898
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1281
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 779
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1476
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2583
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 296
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11000
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.386157388595422e-5
allele num: 29532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4946
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3608
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.914999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 1.447e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.22e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.44e-1

DP
type: SiteQuality
SIO_000300: 8.29106e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-3

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000441562
ensembl transcript: ENST00000544241
gene symbol: TCF4
hgvsc: ENST00000544241.2:c.63C>T
hgvsp: ENST00000544241.2:c.63C>T(p.%3D)
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457113
ensembl transcript: ENST00000563824
gene symbol: TCF4
hgvsc: ENST00000563824.1:c.233-134C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-86-134C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456125
ensembl transcript: ENST00000566279
gene symbol: TCF4
hgvsc: ENST00000566279.1:c.305-134C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-134C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000445202
ensembl transcript: ENST00000540999
gene symbol: TCF4
hgvsc: ENST00000540999.1:c.233-134C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.305-134C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457649
ensembl transcript: ENST00000564999
gene symbol: TCF4
hgvsc: ENST00000564999.1:c.305-134C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.233-134C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455346
ensembl transcript: ENST00000568740
gene symbol: TCF4
hgvsc: ENST00000568740.1:c.233-134C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000439656
ensembl transcript: ENST00000543082
gene symbol: TCF4
hgvsc: ENST00000543082.1:c.179-134C>T
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 363
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11729
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1562
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 20016
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 1799
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 472
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15219
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 156
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 959
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 662
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2072
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3081
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1854
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29209
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12320
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1411
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1428
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4578
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2583
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.606983119319002e-5
allele num: 27724
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.54e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.79e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

DP
type: SiteQuality
SIO_000300: 8.0619e5

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

QD
type: SiteQuality
SIO_000300: 1.026e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455163
ensembl transcript: ENST00000568147
gene symbol: TCF4
hgvsc: ENST00000568147.1:c.233-159T>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.305-159T>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456125
ensembl transcript: ENST00000566279
gene symbol: TCF4
hgvsc: ENST00000566279.1:c.305-159T>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-159T>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456917
ensembl transcript: ENST00000562512
gene symbol: TCF4
hgvsc: ENST00000562512.2:c.-86-159T>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000381382
ensembl transcript: ENST00000398339
gene symbol: TCF4
hgvsc: ENST00000398339.1:c.611-159T>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457392
ensembl transcript: ENST00000568169
gene symbol: TCF4
hgvsc: ENST00000568169.1:c.317-159T>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457747
ensembl transcript: ENST00000563888
gene symbol: TCF4
hgvsc: ENST00000563888.2:c.233-159T>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455346
ensembl transcript: ENST00000568740
gene symbol: TCF4
hgvsc: ENST00000568740.1:c.233-159T>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454328
ensembl transcript: ENST00000564343
gene symbol: TCF4
hgvsc: ENST00000564343.1:c.233-159T>A
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000439656
ensembl transcript: ENST00000543082
gene symbol: TCF4
hgvsc: ENST00000543082.1:c.179-159T>A
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 8954
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1171
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 472
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 359
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 962
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20141
bin: 2.5e0
variant carriers: 1

GenotypeDepth
all individuals: 1843
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 941
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1575
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17880
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 658
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1465
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3127
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22522
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2951
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2310
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2574
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15554
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16946
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2194
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1660
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9718
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.253e1

VQSLOD
type: SiteQuality
SIO_000300: -3.08e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.64e-2

DP
type: SiteQuality
SIO_000300: 6.58415e5

Annotation
canonical: false
clinical significance: likely_benign
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl transcript: ENST00000565580
gene symbol: TCF4
hgvsc: ENST00000565580.1:n.234-165C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
clinical significance: likely_benign
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000348374
ensembl transcript: ENST00000356073
gene symbol: TCF4
hgvsc: ENST00000356073.4:c.305-165C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
clinical significance: likely_benign
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455179
ensembl transcript: ENST00000561992
gene symbol: TCF4
hgvsc: ENST00000561992.1:c.-86-165C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
clinical significance: likely_benign
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455135
ensembl transcript: ENST00000568673
gene symbol: TCF4
hgvsc: ENST00000568673.1:c.233-165C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
clinical significance: likely_benign
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454584
ensembl transcript: ENST00000565908
gene symbol: TCF4
hgvsc: ENST00000565908.2:c.233-165C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
clinical significance: likely_benign
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454352
ensembl transcript: ENST00000569357
gene symbol: TCF4
hgvsc: ENST00000569357.1:c.233-165C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
clinical significance: likely_benign
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000455450
ensembl transcript: ENST00000562543
gene symbol: TCF4
hgvsc: ENST00000562543.1:c.305-165C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
clinical significance: likely_benign
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457392
ensembl transcript: ENST00000568169
gene symbol: TCF4
hgvsc: ENST00000568169.1:c.317-165C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
clinical significance: likely_benign
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000454328
ensembl transcript: ENST00000564343
gene symbol: TCF4
hgvsc: ENST00000564343.1:c.233-165C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
clinical significance: likely_benign
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456125
ensembl transcript: ENST00000566279
gene symbol: TCF4
hgvsc: ENST00000566279.1:c.305-165C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
clinical significance: likely_benign
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457263
ensembl transcript: ENST00000564403
gene symbol: TCF4
hgvsc: ENST00000564403.2:c.305-165C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
clinical significance: likely_benign
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000456983
ensembl transcript: ENST00000566514
gene symbol: TCF4
hgvsc: ENST00000566514.1:c.233-165C>T
variant of: http://identifiers.org/hgnc/11634

Annotation
canonical: false
clinical significance: likely_benign
consequence: intron_variant
ensembl gene: ENSG00000196628
ensembl protein: ENSP00000457113
ensembl transcript: ENST00000563824
gene symbol: TCF4
hgvsc: ENST00000563824.1:c.233-165C>T
variant of: http://identifiers.org/hgnc/11634

GenotypeDepth
all individuals: 159
bin: 8.25e1
variant carriers: 158

GenotypeDepth
all individuals: 1006
bin: 1.75e1
variant carriers: 751

GenotypeDepth
all individuals: 115
bin: 5.75e1
variant carriers: 59

GenotypeDepth
all individuals: 21724
bin: 2.5e0
variant carriers: 1256

GenotypeDepth
all individuals: 84
bin: 6.25e1
variant carriers: 66

GenotypeDepth
all individuals: 16242
bin: 7.5e0
variant carriers: 6302

GenotypeDepth
all individuals: 639
bin: 4.25e1
variant carriers: 69

GenotypeDepth
all individuals: 141
bin: 9.25e1
variant carriers: 140

GenotypeDepth
all individuals: 151
bin: 7.25e1
variant carriers: 147

GenotypeDepth
all individuals: 6751
bin: 1.25e1
variant carriers: 2715

GenotypeDepth
all individuals: 1657
bin: 2.75e1
variant carriers: 162

GenotypeDepth
all individuals: 862
bin: 2.25e1
variant carriers: 273

GenotypeDepth
all individuals: 1530
bin: 3.25e1
variant carriers: 140

GenotypeDepth
all individuals: 729
bin: 9.75e1
variant carriers: 727

GenotypeDepth
all individuals: 124
bin: 8.75e1
variant carriers: 121

GenotypeDepth
all individuals: 355
bin: 4.75e1
variant carriers: 53

GenotypeDepth
all individuals: 176
bin: 5.25e1
variant carriers: 52

GenotypeDepth
all individuals: 939
bin: 3.75e1
variant carriers: 104

GenotypeDepth
all individuals: 114
bin: 6.75e1
variant carriers: 99

GenotypeDepth
all individuals: 126
bin: 7.75e1
variant carriers: 121

GenotypeQuality
all individuals: 2401
bin: 6.25e1
variant carriers: 497