19-16860874-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860874
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860874
    reference: chr 19
allele count: 3
allele frequency: 2.501125506477915e-5
allele num: 119946
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.803G>A
  hgvsp: ENSP00000428955.1:p.Gly268Glu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1421G>A
  hgvsp: ENSP00000369136.3:p.Gly474Glu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1421G>A
  hgvsp: ENSP00000447224.1:p.Gly474Glu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1310G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1257G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1016G>A
  hgvsp: ENSP00000340159.6:p.Gly339Glu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1421G>A
  hgvsp: ENSP00000428579.2:p.Gly474Glu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1421G>A
  hgvsp: ENSP00000447548.1:p.Gly474Glu
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly474Glu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

19-16860882-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860882
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860882
    reference: chr 19
allele count: 1762
allele frequency: 1.468235450969935e-2
allele num: 120008
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1024G>A
  hgvsp: ENSP00000340159.6:p.Asp342Asn
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.811G>A
  hgvsp: ENSP00000428955.1:p.Asp271Asn
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1318G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1429G>A
  hgvsp: ENSP00000447224.1:p.Asp477Asn
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1429G>A
  hgvsp: ENSP00000428579.2:p.Asp477Asn
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1429G>A
  hgvsp: ENSP00000447548.1:p.Asp477Asn
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1265G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1429G>A
  hgvsp: ENSP00000369136.3:p.Asp477Asn
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14410
  bin: 2.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 9.75e1
  variant carriers: 1093
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 10585
  bin: 3.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 30149
  bin: 2.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 3.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 78
genotype quality: GenotypeQuality
  all individuals: 8574
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 2.25e1
  variant carriers: 1
hgvs: p.Asp477Asn
num of homozygotes: 14
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

19-16860885-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860885
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860885
    reference: chr 19
allele count: 6
allele frequency: 5.000250012500625e-5
allele num: 119994
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.814A>G
  hgvsp: ENSP00000428955.1:p.Thr272Ala
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1027A>G
  hgvsp: ENSP00000340159.6:p.Thr343Ala
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1321A>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1432A>G
  hgvsp: ENSP00000447548.1:p.Thr478Ala
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1268A>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1432A>G
  hgvsp: ENSP00000447224.1:p.Thr478Ala
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1432A>G
  hgvsp: ENSP00000428579.2:p.Thr478Ala
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1432A>G
  hgvsp: ENSP00000369136.3:p.Thr478Ala
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr478Ala
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

19-16860894-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860894
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860894
    reference: chr 19
allele count: 1
allele frequency: 8.330695279828055e-6
allele num: 120038
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1277C>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1441C>G
  hgvsp: ENSP00000369136.3:p.Arg481Gly
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.823C>G
  hgvsp: ENSP00000428955.1:p.Arg275Gly
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1330C>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1441C>G
  hgvsp: ENSP00000447548.1:p.Arg481Gly
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1441C>G
  hgvsp: ENSP00000447224.1:p.Arg481Gly
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1036C>G
  hgvsp: ENSP00000340159.6:p.Arg346Gly
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1441C>G
  hgvsp: ENSP00000428579.2:p.Arg481Gly
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg481Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: C
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP

19-16860894-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860894
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860894
    reference: chr 19
allele count: 1
allele frequency: 8.330695279828055e-6
allele num: 120038
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1036C>T
  hgvsp: ENSP00000340159.6:p.Arg346Trp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.823C>T
  hgvsp: ENSP00000428955.1:p.Arg275Trp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1441C>T
  hgvsp: ENSP00000447224.1:p.Arg481Trp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1277C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1441C>T
  hgvsp: ENSP00000447548.1:p.Arg481Trp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1441C>T
  hgvsp: ENSP00000428579.2:p.Arg481Trp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1441C>T
  hgvsp: ENSP00000369136.3:p.Arg481Trp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1330C>T
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg481Trp
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

19-16860895-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860895
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860895
    reference: chr 19
allele count: 302
allele frequency: 2.514864347217827e-3
allele num: 120086
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.824G>A
  hgvsp: ENSP00000428955.1:p.Arg275Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1442G>A
  hgvsp: ENSP00000428579.2:p.Arg481Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1037G>A
  hgvsp: ENSP00000340159.6:p.Arg346Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1331G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1442G>A
  hgvsp: ENSP00000369136.3:p.Arg481Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1442G>A
  hgvsp: ENSP00000447224.1:p.Arg481Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1442G>A
  hgvsp: ENSP00000447548.1:p.Arg481Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1278G>A
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14710
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10985
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 31063
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 44584
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg481Gln
num of homozygotes: 5
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

19-16860898-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860898
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860898
    reference: chr 19
allele count: 1
allele frequency: 8.324038157390913e-6
allele num: 120134
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1040T>A
  hgvsp: ENSP00000340159.6:p.Val347Glu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1281T>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1334T>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1445T>A
  hgvsp: ENSP00000369136.3:p.Val482Glu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1445T>A
  hgvsp: ENSP00000428579.2:p.Val482Glu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.827T>A
  hgvsp: ENSP00000428955.1:p.Val276Glu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1445T>A
  hgvsp: ENSP00000447224.1:p.Val482Glu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1445T>A
  hgvsp: ENSP00000447548.1:p.Val482Glu
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31182
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44864
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val482Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-16860902-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860902
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860902
    reference: chr 19
allele count: 1
allele frequency: 8.325008325008325e-6
allele num: 120120
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1449C>T
  hgvsp: ENST00000549814.1:c.1449C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1285C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1449C>T
  hgvsp: ENST00000524140.2:c.1449C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1449C>T
  hgvsp: ENST00000552788.1:c.1449C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1449C>T
  hgvsp: ENST00000379808.3:c.1449C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.831C>T
  hgvsp: ENST00000523826.1:c.831C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1338C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1044C>T
  hgvsp: ENST00000339803.6:c.1044C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31186
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu483Leu
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

19-16860904-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860904
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860904
    reference: chr 19
allele count: 1
allele frequency: 8.323761008173934e-6
allele num: 120138
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1451T>A
  hgvsp: ENSP00000428579.2:p.Leu484Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1287T>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1340T>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.833T>A
  hgvsp: ENSP00000428955.1:p.Leu278Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1451T>A
  hgvsp: ENSP00000447224.1:p.Leu484Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1451T>A
  hgvsp: ENSP00000369136.3:p.Leu484Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1046T>A
  hgvsp: ENSP00000340159.6:p.Leu349Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1451T>A
  hgvsp: ENSP00000447548.1:p.Leu484Gln
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu484Gln
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

19-16860905-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860905
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860905
    reference: chr 19
allele count: 2
allele frequency: 1.66461364317342e-5
allele num: 120148
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.834G>A
  hgvsp: ENST00000523826.1:c.834G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1452G>A
  hgvsp: ENST00000379808.3:c.1452G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1047G>A
  hgvsp: ENST00000339803.6:c.1047G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1452G>A
  hgvsp: ENST00000552788.1:c.1452G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1452G>A
  hgvsp: ENST00000524140.2:c.1452G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1288G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1452G>A
  hgvsp: ENST00000549814.1:c.1452G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1341G>A
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44755
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2201
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu484Leu
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

19-16860910-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860910
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860910
    reference: chr 19
allele count: 2
allele frequency: 1.664918502239315e-5
allele num: 120126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1457C>T
  hgvsp: ENSP00000369136.3:p.Pro486Leu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1052C>T
  hgvsp: ENSP00000340159.6:p.Pro351Leu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1457C>T
  hgvsp: ENSP00000447224.1:p.Pro486Leu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.839C>T
  hgvsp: ENSP00000428955.1:p.Pro280Leu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1346C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1457C>T
  hgvsp: ENSP00000447548.1:p.Pro486Leu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1457C>T
  hgvsp: ENSP00000428579.2:p.Pro486Leu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1293C>T
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44744
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro486Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum

19-16860911-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860911
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860911
    reference: chr 19
allele count: 2
allele frequency: 1.664364296057121e-5
allele num: 120166
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1294G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.840G>A
  hgvsp: ENST00000523826.1:c.840G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1458G>A
  hgvsp: ENST00000379808.3:c.1458G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1458G>A
  hgvsp: ENST00000549814.1:c.1458G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1458G>A
  hgvsp: ENST00000552788.1:c.1458G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1458G>A
  hgvsp: ENST00000524140.2:c.1458G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1053G>A
  hgvsp: ENST00000339803.6:c.1053G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1347G>A
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2197
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro486Pro
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

19-16860912-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860912
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860912
    reference: chr 19
allele count: 1
allele frequency: 8.322375538873816e-6
allele num: 120158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1459G>A
  hgvsp: ENSP00000369136.3:p.Glu487Lys
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1054G>A
  hgvsp: ENSP00000340159.6:p.Glu352Lys
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1295G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1459G>A
  hgvsp: ENSP00000447224.1:p.Glu487Lys
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.841G>A
  hgvsp: ENSP00000428955.1:p.Glu281Lys
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1459G>A
  hgvsp: ENSP00000447548.1:p.Glu487Lys
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1459G>A
  hgvsp: ENSP00000428579.2:p.Glu487Lys
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1348G>A
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8927
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu487Lys
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-16860916-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860916
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860916
    reference: chr 19
allele count: 1
allele frequency: 8.319467554076538e-6
allele num: 120200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1058C>A
  hgvsp: ENSP00000340159.6:p.Ala353Asp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1352C>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1463C>A
  hgvsp: ENSP00000428579.2:p.Ala488Asp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1463C>A
  hgvsp: ENSP00000447224.1:p.Ala488Asp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.845C>A
  hgvsp: ENSP00000428955.1:p.Ala282Asp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1463C>A
  hgvsp: ENSP00000369136.3:p.Ala488Asp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1463C>A
  hgvsp: ENSP00000447548.1:p.Ala488Asp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1299C>A
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8935
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44923
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala488Asp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

19-16860920-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860920
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860920
    reference: chr 19
allele count: 2
allele frequency: 1.663672056964131e-5
allele num: 120216
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1356C>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1467C>G
  hgvsp: ENSP00000428579.2:p.Tyr489Ter
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1467C>G
  hgvsp: ENSP00000447548.1:p.Tyr489Ter
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1062C>G
  hgvsp: ENSP00000340159.6:p.Tyr354Ter
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.849C>G
  hgvsp: ENSP00000428955.1:p.Tyr283Ter
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1467C>G
  hgvsp: ENSP00000369136.3:p.Tyr489Ter
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1303C>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1467C>G
  hgvsp: ENSP00000447224.1:p.Tyr489Ter
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14861
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Tyr489Ter
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

19-16860923-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860923
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860923
    reference: chr 19
allele count: 2
allele frequency: 1.6632569898375e-5
allele num: 120246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1065G>A
  hgvsp: ENSP00000340159.6:p.Trp355Ter
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1359G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1470G>A
  hgvsp: ENSP00000369136.3:p.Trp490Ter
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1470G>A
  hgvsp: ENSP00000447548.1:p.Trp490Ter
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1470G>A
  hgvsp: ENSP00000428579.2:p.Trp490Ter
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1470G>A
  hgvsp: ENSP00000447224.1:p.Trp490Ter
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.852G>A
  hgvsp: ENSP00000428955.1:p.Trp284Ter
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1306G>A
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8940
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Trp490Ter
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD

19-16860928-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860928
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860928
    reference: chr 19
allele count: 1
allele frequency: 8.316146630297385e-6
allele num: 120248
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1475T>C
  hgvsp: ENSP00000428579.2:p.Val492Ala
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1475T>C
  hgvsp: ENSP00000369136.3:p.Val492Ala
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.857T>C
  hgvsp: ENSP00000428955.1:p.Val286Ala
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1475T>C
  hgvsp: ENSP00000447224.1:p.Val492Ala
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1070T>C
  hgvsp: ENSP00000340159.6:p.Val357Ala
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1311T>C
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1364T>C
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1475T>C
  hgvsp: ENSP00000447548.1:p.Val492Ala
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val492Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

19-16860932-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860932
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860932
    reference: chr 19
allele count: 3
allele frequency: 2.495259007885018e-5
allele num: 120228
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1479G>A
  hgvsp: ENST00000549814.1:c.1479G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1479G>A
  hgvsp: ENST00000552788.1:c.1479G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1479G>A
  hgvsp: ENST00000524140.2:c.1479G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1368G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1315G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.861G>A
  hgvsp: ENST00000523826.1:c.861G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1074G>A
  hgvsp: ENST00000339803.6:c.1074G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1479G>A
  hgvsp: ENST00000379808.3:c.1479G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8929
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44925
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Lys493Lys
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

19-16860933-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860933
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860933
    reference: chr 19
allele count: 4
allele frequency: 3.327012010513358e-5
allele num: 120228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.862C>G
  hgvsp: ENSP00000428955.1:p.Pro288Ala
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1480C>G
  hgvsp: ENSP00000369136.3:p.Pro494Ala
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1075C>G
  hgvsp: ENSP00000340159.6:p.Pro359Ala
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1480C>G
  hgvsp: ENSP00000428579.2:p.Pro494Ala
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1369C>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1480C>G
  hgvsp: ENSP00000447548.1:p.Pro494Ala
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1316C>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1480C>G
  hgvsp: ENSP00000447224.1:p.Pro494Ala
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44970
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2192
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Pro494Ala
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

19-16860940-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860940
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860940
    reference: chr 19
allele count: 1
allele frequency: 8.320852055250457e-6
allele num: 120180
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.869C>G
  hgvsp: ENSP00000428955.1:p.Ser290Cys
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1487C>G
  hgvsp: ENSP00000447224.1:p.Ser496Cys
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1487C>G
  hgvsp: ENSP00000369136.3:p.Ser496Cys
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1082C>G
  hgvsp: ENSP00000340159.6:p.Ser361Cys
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1487C>G
  hgvsp: ENSP00000428579.2:p.Ser496Cys
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1323C>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1487C>G
  hgvsp: ENSP00000447548.1:p.Ser496Cys
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1376C>G
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser496Cys
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

19-16860941-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860941
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860941
    reference: chr 19
allele count: 7
allele frequency: 5.824887246825436e-5
allele num: 120174
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1488C>T
  hgvsp: ENST00000524140.2:c.1488C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1488C>T
  hgvsp: ENST00000549814.1:c.1488C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.870C>T
  hgvsp: ENST00000523826.1:c.870C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1488C>T
  hgvsp: ENST00000552788.1:c.1488C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1324C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1377C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1488C>T
  hgvsp: ENST00000379808.3:c.1488C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1083C>T
  hgvsp: ENST00000339803.6:c.1083C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser496Ser
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

19-16860942-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860942
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860942
    reference: chr 19
allele count: 11
allele frequency: 9.15491785541888e-5
allele num: 120154
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1325G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1084G>A
  hgvsp: ENSP00000340159.6:p.Gly362Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1489G>A
  hgvsp: ENSP00000447224.1:p.Gly497Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.871G>A
  hgvsp: ENSP00000428955.1:p.Gly291Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1489G>A
  hgvsp: ENSP00000428579.2:p.Gly497Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1489G>A
  hgvsp: ENSP00000369136.3:p.Gly497Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1378G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1489G>A
  hgvsp: ENSP00000447548.1:p.Gly497Arg
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8910
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly497Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS

19-16860960-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860960
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860960
    reference: chr 19
allele count: 13
allele frequency: 1.083640364770018e-4
allele num: 119966
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1507A>G
  hgvsp: ENSP00000447548.1:p.Met503Val
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1507A>G
  hgvsp: ENSP00000369136.3:p.Met503Val
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.889A>G
  hgvsp: ENSP00000428955.1:p.Met297Val
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1507A>G
  hgvsp: ENSP00000447224.1:p.Met503Val
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1343A>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1102A>G
  hgvsp: ENSP00000340159.6:p.Met368Val
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1396A>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1507A>G
  hgvsp: ENSP00000428579.2:p.Met503Val
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14311
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11039
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met503Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum

19-16860962-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860962
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860962
    reference: chr 19
allele count: 3
allele frequency: 2.501500900540324e-5
allele num: 119928
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1509G>A
  hgvsp: ENSP00000447224.1:p.Met503Ile
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1509G>A
  hgvsp: ENSP00000369136.3:p.Met503Ile
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1509G>A
  hgvsp: ENSP00000428579.2:p.Met503Ile
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1104G>A
  hgvsp: ENSP00000340159.6:p.Met368Ile
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.891G>A
  hgvsp: ENSP00000428955.1:p.Met297Ile
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1509G>A
  hgvsp: ENSP00000447548.1:p.Met503Ile
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1398G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1345G>A
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8843
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44297
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Met503Ile
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

19-16860962-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860962
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860962
    reference: chr 19
allele count: 1
allele frequency: 8.338336335134414e-6
allele num: 119928
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1345G>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1509G>T
  hgvsp: ENSP00000447224.1:p.Met503Ile
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1509G>T
  hgvsp: ENSP00000369136.3:p.Met503Ile
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1509G>T
  hgvsp: ENSP00000428579.2:p.Met503Ile
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.891G>T
  hgvsp: ENSP00000428955.1:p.Met297Ile
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1398G>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1104G>T
  hgvsp: ENSP00000340159.6:p.Met368Ile
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1509G>T
  hgvsp: ENSP00000447548.1:p.Met503Ile
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Met503Ile
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

19-16860970-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860970
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860970
    reference: chr 19
allele count: 2
allele frequency: 1.670146137787057e-5
allele num: 119750
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1517T>C
  hgvsp: ENSP00000428579.2:p.Leu506Pro
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1517T>C
  hgvsp: ENSP00000447548.1:p.Leu506Pro
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1517T>C
  hgvsp: ENSP00000447224.1:p.Leu506Pro
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1112T>C
  hgvsp: ENSP00000340159.6:p.Leu371Pro
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.899T>C
  hgvsp: ENSP00000428955.1:p.Leu300Pro
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1406T>C
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1353T>C
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1517T>C
  hgvsp: ENSP00000369136.3:p.Leu506Pro
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1285
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu506Pro
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/19-16860975-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860975
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860975
    reference: chr 19
allele count: 4
allele frequency: 3.342581141157201e-5
allele num: 119668
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1522C>A
  hgvsp: ENSP00000447548.1:p.Leu508Met
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1522C>A
  hgvsp: ENSP00000369136.3:p.Leu508Met
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1522C>A
  hgvsp: ENSP00000447224.1:p.Leu508Met
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1117C>A
  hgvsp: ENSP00000340159.6:p.Leu373Met
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1358C>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.904C>A
  hgvsp: ENSP00000428955.1:p.Leu302Met
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1522C>A
  hgvsp: ENSP00000428579.2:p.Leu508Met
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1411C>A
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30781
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43310
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu508Met
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-16860980-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860980
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860980
    reference: chr 19
allele count: 27
allele frequency: 2.256958956783415e-4
allele num: 119630
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1122A>G
  hgvsp: ENST00000339803.6:c.1122A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1527A>G
  hgvsp: ENST00000379808.3:c.1527A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1363A>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1527A>G
  hgvsp: ENST00000524140.2:c.1527A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1416A>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.909A>G
  hgvsp: ENST00000523826.1:c.909A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1527A>G
  hgvsp: ENST00000552788.1:c.1527A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1527A>G
  hgvsp: ENST00000549814.1:c.1527A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10946
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13911
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 9.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala509Ala
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

19-16860983-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860983
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860983
    reference: chr 19
allele count: 38
allele frequency: 3.176460753991474e-4
allele num: 119630
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1125T>G
  hgvsp: ENST00000339803.6:c.1125T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1419T>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1530T>G
  hgvsp: ENST00000524140.2:c.1530T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.912T>G
  hgvsp: ENST00000523826.1:c.912T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1530T>G
  hgvsp: ENST00000379808.3:c.1530T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1530T>G
  hgvsp: ENST00000549814.1:c.1530T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1366T>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1530T>G
  hgvsp: ENST00000552788.1:c.1530T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2149
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala510Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

19-16860985-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860985
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860985
    reference: chr 19
allele count: 1
allele frequency: 8.365960579593749e-6
allele num: 119532
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1532C>T
  hgvsp: ENSP00000447224.1:p.Ala511Val
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1532C>T
  hgvsp: ENSP00000447548.1:p.Ala511Val
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1127C>T
  hgvsp: ENSP00000340159.6:p.Ala376Val
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.914C>T
  hgvsp: ENSP00000428955.1:p.Ala305Val
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1421C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1532C>T
  hgvsp: ENSP00000369136.3:p.Ala511Val
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1368C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1532C>T
  hgvsp: ENSP00000428579.2:p.Ala511Val
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1456
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala511Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

19-16860994-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860994
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860994
    reference: chr 19
allele count: 4
allele frequency: 3.352105122016626e-5
allele num: 119328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1136C>T
  hgvsp: ENSP00000340159.6:p.Thr379Met
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1541C>T
  hgvsp: ENSP00000447224.1:p.Thr514Met
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1430C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.923C>T
  hgvsp: ENSP00000428955.1:p.Thr308Met
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1541C>T
  hgvsp: ENSP00000369136.3:p.Thr514Met
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1541C>T
  hgvsp: ENSP00000447548.1:p.Thr514Met
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1541C>T
  hgvsp: ENSP00000428579.2:p.Thr514Met
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1377C>T
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42289
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr514Met
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-16860994-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860994
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860994
    reference: chr 19
allele count: 1
allele frequency: 8.380262805041566e-6
allele num: 119328
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1541C>A
  hgvsp: ENSP00000428579.2:p.Thr514Lys
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1377C>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1430C>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1541C>A
  hgvsp: ENSP00000447548.1:p.Thr514Lys
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1136C>A
  hgvsp: ENSP00000340159.6:p.Thr379Lys
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.923C>A
  hgvsp: ENSP00000428955.1:p.Thr308Lys
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1541C>A
  hgvsp: ENSP00000447224.1:p.Thr514Lys
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1541C>A
  hgvsp: ENSP00000369136.3:p.Thr514Lys
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8657
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr514Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-16860995-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860995
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860995
    reference: chr 19
allele count: 1
allele frequency: 8.380965151946898e-6
allele num: 119318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1137G>T
  hgvsp: ENST00000339803.6:c.1137G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.924G>T
  hgvsp: ENST00000523826.1:c.924G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1542G>T
  hgvsp: ENST00000549814.1:c.1542G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1542G>T
  hgvsp: ENST00000552788.1:c.1542G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1542G>T
  hgvsp: ENST00000524140.2:c.1542G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1378G>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1542G>T
  hgvsp: ENST00000379808.3:c.1542G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1431G>T
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13710
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr514Thr
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-16860996-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16860996
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16860996
    reference: chr 19
allele count: 1
allele frequency: 8.379560575843403e-6
allele num: 119338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1432C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1543C>T
  hgvsp: ENST00000549814.1:c.1543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1379C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.925C>T
  hgvsp: ENST00000523826.1:c.925C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1138C>T
  hgvsp: ENST00000339803.6:c.1138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1543C>T
  hgvsp: ENST00000379808.3:c.1543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1543C>T
  hgvsp: ENST00000552788.1:c.1543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1543C>T
  hgvsp: ENST00000524140.2:c.1543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8683
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu515Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

19-16861003-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861003
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861003
    reference: chr 19
allele count: 5
allele frequency: 4.194912410228874e-5
allele num: 119192
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1145C>T
  hgvsp: ENSP00000340159.6:p.Pro382Leu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.932C>T
  hgvsp: ENSP00000428955.1:p.Pro311Leu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1550C>T
  hgvsp: ENSP00000428579.2:p.Pro517Leu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1386C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1550C>T
  hgvsp: ENSP00000447224.1:p.Pro517Leu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1439C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1550C>T
  hgvsp: ENSP00000369136.3:p.Pro517Leu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1550C>T
  hgvsp: ENSP00000447548.1:p.Pro517Leu
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1625
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 9.75e1
  variant carriers: 5
hgvs: p.Pro517Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

19-16861004-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861004
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861004
    reference: chr 19
allele count: 9
allele frequency: 7.54906894816306e-5
allele num: 119220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1551G>A
  hgvsp: ENST00000379808.3:c.1551G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1146G>A
  hgvsp: ENST00000339803.6:c.1146G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1551G>A
  hgvsp: ENST00000524140.2:c.1551G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1551G>A
  hgvsp: ENST00000549814.1:c.1551G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1440G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1551G>A
  hgvsp: ENST00000552788.1:c.1551G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.933G>A
  hgvsp: ENST00000523826.1:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1387G>A
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13776
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10873
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro517Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-16861004-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861004
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861004
    reference: chr 19
allele count: 2
allele frequency: 1.677570877369569e-5
allele num: 119220
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1440G>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1387G>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1551G>T
  hgvsp: ENST00000552788.1:c.1551G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1551G>T
  hgvsp: ENST00000549814.1:c.1551G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1146G>T
  hgvsp: ENST00000339803.6:c.1146G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1551G>T
  hgvsp: ENST00000524140.2:c.1551G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.933G>T
  hgvsp: ENST00000523826.1:c.933G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1551G>T
  hgvsp: ENST00000379808.3:c.1551G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42430
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro517Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

19-16861006-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861006
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861006
    reference: chr 19
allele count: 1
allele frequency: 8.387010198604401e-6
allele num: 119232
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1442T>C
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.935T>C
  hgvsp: ENSP00000428955.1:p.Val312Ala
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1553T>C
  hgvsp: ENSP00000447224.1:p.Val518Ala
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1148T>C
  hgvsp: ENSP00000340159.6:p.Val383Ala
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1389T>C
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1553T>C
  hgvsp: ENSP00000369136.3:p.Val518Ala
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1553T>C
  hgvsp: ENSP00000447548.1:p.Val518Ala
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1553T>C
  hgvsp: ENSP00000428579.2:p.Val518Ala
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val518Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/19-16861011-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861011
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861011
    reference: chr 19
allele count: 2
allele frequency: 1.678274733573886e-5
allele num: 119170
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.940A>C
  hgvsp: ENSP00000428955.1:p.Thr314Pro
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1153A>C
  hgvsp: ENSP00000340159.6:p.Thr385Pro
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1558A>C
  hgvsp: ENSP00000428579.2:p.Thr520Pro
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1394A>C
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1558A>C
  hgvsp: ENSP00000369136.3:p.Thr520Pro
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1558A>C
  hgvsp: ENSP00000447548.1:p.Thr520Pro
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1447A>C
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1558A>C
  hgvsp: ENSP00000447224.1:p.Thr520Pro
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30163
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2125
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8655
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42740
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr520Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-16861012-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861012
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861012
    reference: chr 19
allele count: 2
allele frequency: 1.67937392939912e-5
allele num: 119092
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1154C>G
  hgvsp: ENSP00000340159.6:p.Thr385Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1559C>G
  hgvsp: ENSP00000428579.2:p.Thr520Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1395C>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1559C>G
  hgvsp: ENSP00000369136.3:p.Thr520Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1559C>G
  hgvsp: ENSP00000447548.1:p.Thr520Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.941C>G
  hgvsp: ENSP00000428955.1:p.Thr314Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1559C>G
  hgvsp: ENSP00000447224.1:p.Thr520Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1448C>G
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1682
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1697
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr520Arg
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

19-16861025-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861025
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861025
    reference: chr 19
allele count: 1
allele frequency: 8.404067568703253e-6
allele num: 118990
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1461G>C
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.954G>C
  hgvsp: ENSP00000428955.1:p.Trp318Cys
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1572G>C
  hgvsp: ENSP00000369136.3:p.Trp524Cys
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1572G>C
  hgvsp: ENSP00000428579.2:p.Trp524Cys
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1408G>C
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1572G>C
  hgvsp: ENSP00000447224.1:p.Trp524Cys
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1167G>C
  hgvsp: ENSP00000340159.6:p.Trp389Cys
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1572G>C
  hgvsp: ENSP00000447548.1:p.Trp524Cys
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Trp524Cys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-16861039-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861039
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861039
    reference: chr 19
allele count: 1
allele frequency: 8.410994852471151e-6
allele num: 118892
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1422A>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1586A>G
  hgvsp: ENSP00000447548.1:p.Glu529Gly
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1586A>G
  hgvsp: ENSP00000428579.2:p.Glu529Gly
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1181A>G
  hgvsp: ENSP00000340159.6:p.Glu394Gly
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.968A>G
  hgvsp: ENSP00000428955.1:p.Glu323Gly
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1586A>G
  hgvsp: ENSP00000447224.1:p.Glu529Gly
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1475A>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1586A>G
  hgvsp: ENSP00000369136.3:p.Glu529Gly
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu529Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

19-16861040-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861040
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861040
    reference: chr 19
allele count: 1
allele frequency: 8.413542437908056e-6
allele num: 118856
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.969G>A
  hgvsp: ENST00000523826.1:c.969G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1182G>A
  hgvsp: ENST00000339803.6:c.1182G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1587G>A
  hgvsp: ENST00000552788.1:c.1587G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1587G>A
  hgvsp: ENST00000379808.3:c.1587G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1423G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1587G>A
  hgvsp: ENST00000549814.1:c.1587G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1587G>A
  hgvsp: ENST00000524140.2:c.1587G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1476G>A
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10838
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu529Glu
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ

19-16861056-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861056
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861056
    reference: chr 19
allele count: 1
allele frequency: 8.435259384226064e-6
allele num: 118550
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1603C>G
  hgvsp: ENSP00000428579.2:p.Arg535Gly
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1439C>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1492C>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1603C>G
  hgvsp: ENSP00000369136.3:p.Arg535Gly
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1603C>G
  hgvsp: ENSP00000447548.1:p.Arg535Gly
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1198C>G
  hgvsp: ENSP00000340159.6:p.Arg400Gly
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1603C>G
  hgvsp: ENSP00000447224.1:p.Arg535Gly
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.985C>G
  hgvsp: ENSP00000428955.1:p.Arg329Gly
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30512
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg535Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

19-16861056-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861056
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861056
    reference: chr 19
allele count: 11
allele frequency: 9.278785322648671e-5
allele num: 118550
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1439C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1492C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.985C>T
  hgvsp: ENSP00000428955.1:p.Arg329Trp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1603C>T
  hgvsp: ENSP00000447224.1:p.Arg535Trp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1198C>T
  hgvsp: ENSP00000340159.6:p.Arg400Trp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1603C>T
  hgvsp: ENSP00000447548.1:p.Arg535Trp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1603C>T
  hgvsp: ENSP00000369136.3:p.Arg535Trp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1603C>T
  hgvsp: ENSP00000428579.2:p.Arg535Trp
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30512
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10869
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1692
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43398
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg535Trp
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

19-16861057-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861057
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861057
    reference: chr 19
allele count: 8
allele frequency: 6.750940912389665e-5
allele num: 118502
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.986G>A
  hgvsp: ENSP00000428955.1:p.Arg329Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1604G>A
  hgvsp: ENSP00000369136.3:p.Arg535Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1604G>A
  hgvsp: ENSP00000447224.1:p.Arg535Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1199G>A
  hgvsp: ENSP00000340159.6:p.Arg400Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1493G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1604G>A
  hgvsp: ENSP00000447548.1:p.Arg535Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1604G>A
  hgvsp: ENSP00000428579.2:p.Arg535Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1440G>A
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13956
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8628
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg535Gln
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

19-16861059-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861059
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861059
    reference: chr 19
allele count: 1
allele frequency: 8.43340979624882e-6
allele num: 118576
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1442C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1606C>T
  hgvsp: ENST00000552788.1:c.1606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1606C>T
  hgvsp: ENST00000549814.1:c.1606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1606C>T
  hgvsp: ENST00000379808.3:c.1606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1495C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1201C>T
  hgvsp: ENST00000339803.6:c.1201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1606C>T
  hgvsp: ENST00000524140.2:c.1606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.988C>T
  hgvsp: ENST00000523826.1:c.988C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu536Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ

19-16861063-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861063
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861063
    reference: chr 19
allele count: 1
allele frequency: 8.43127666391245e-6
allele num: 118606
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1446G>C
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.992G>C
  hgvsp: ENSP00000428955.1:p.Arg331Thr
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1205G>C
  hgvsp: ENSP00000340159.6:p.Arg402Thr
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1610G>C
  hgvsp: ENSP00000428579.2:p.Arg537Thr
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1610G>C
  hgvsp: ENSP00000369136.3:p.Arg537Thr
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1610G>C
  hgvsp: ENSP00000447224.1:p.Arg537Thr
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1499G>C
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1610G>C
  hgvsp: ENSP00000447548.1:p.Arg537Thr
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43568
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg537Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD

19-16861069-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861069
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861069
    reference: chr 19
allele count: 1
allele frequency: 8.433836552247617e-6
allele num: 118570
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1505C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1211C>T
  hgvsp: ENSP00000340159.6:p.Ala404Val
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1616C>T
  hgvsp: ENSP00000447224.1:p.Ala539Val
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.998C>T
  hgvsp: ENSP00000428955.1:p.Ala333Val
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1616C>T
  hgvsp: ENSP00000428579.2:p.Ala539Val
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1452C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1616C>T
  hgvsp: ENSP00000447548.1:p.Ala539Val
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1616C>T
  hgvsp: ENSP00000369136.3:p.Ala539Val
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10803
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14107
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8574
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala539Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum

19-16861070-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861070
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861070
    reference: chr 19
allele count: 5
allele frequency: 4.2165626581211e-5
allele num: 118580
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1617G>A
  hgvsp: ENST00000549814.1:c.1617G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1453G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.999G>A
  hgvsp: ENST00000523826.1:c.999G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1617G>A
  hgvsp: ENST00000524140.2:c.1617G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1617G>A
  hgvsp: ENST00000379808.3:c.1617G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1617G>A
  hgvsp: ENST00000552788.1:c.1617G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1212G>A
  hgvsp: ENST00000339803.6:c.1212G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1506G>A
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14103
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8571
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala539Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

19-16861083-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861083
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861083
    reference: chr 19
allele count: 10
allele frequency: 8.444376889429329e-5
allele num: 118422
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1225C>T
  hgvsp: ENSP00000340159.6:p.Arg409Trp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1630C>T
  hgvsp: ENSP00000447548.1:p.Arg544Trp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1630C>T
  hgvsp: ENSP00000428579.2:p.Arg544Trp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.1012C>T
  hgvsp: ENSP00000428955.1:p.Arg338Trp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1630C>T
  hgvsp: ENSP00000447224.1:p.Arg544Trp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1630C>T
  hgvsp: ENSP00000369136.3:p.Arg544Trp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1519C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1466C>T
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30001
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10671
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg544Trp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

19-16861084-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861084
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861084
    reference: chr 19
allele count: 78
allele frequency: 6.585501764576754e-4
allele num: 118442
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1631G>A
  hgvsp: ENSP00000447224.1:p.Arg544Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1631G>A
  hgvsp: ENSP00000428579.2:p.Arg544Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1631G>A
  hgvsp: ENSP00000369136.3:p.Arg544Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1467G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.1013G>A
  hgvsp: ENSP00000428955.1:p.Arg338Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1226G>A
  hgvsp: ENSP00000340159.6:p.Arg409Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1520G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1631G>A
  hgvsp: ENSP00000447548.1:p.Arg544Gln
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10634
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14274
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 30030
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg544Gln
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

19-16861089-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861089
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861089
    reference: chr 19
allele count: 1
allele frequency: 8.446802040747373e-6
allele num: 118388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.1018T>A
  hgvsp: ENSP00000428955.1:p.Trp340Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1636T>A
  hgvsp: ENSP00000447224.1:p.Trp546Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1525T>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1472T>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1231T>A
  hgvsp: ENSP00000340159.6:p.Trp411Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1636T>A
  hgvsp: ENSP00000369136.3:p.Trp546Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1636T>A
  hgvsp: ENSP00000447548.1:p.Trp546Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1636T>A
  hgvsp: ENSP00000428579.2:p.Trp546Arg
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Trp546Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-16861092-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861092
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861092
    reference: chr 19
allele count: 1
allele frequency: 8.447087444249223e-6
allele num: 118384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1234G>T
  hgvsp: ENSP00000340159.6:p.Ala412Ser
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1639G>T
  hgvsp: ENSP00000447548.1:p.Ala547Ser
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1528G>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.1021G>T
  hgvsp: ENSP00000428955.1:p.Ala341Ser
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1475G>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1639G>T
  hgvsp: ENSP00000428579.2:p.Ala547Ser
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1639G>T
  hgvsp: ENSP00000447224.1:p.Ala547Ser
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1639G>T
  hgvsp: ENSP00000369136.3:p.Ala547Ser
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29745
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10516
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42727
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala547Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

19-16861093-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861093
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861093
    reference: chr 19
allele count: 1
allele frequency: 8.448514751106756e-6
allele num: 118364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1529C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1476C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1235C>T
  hgvsp: ENSP00000340159.6:p.Ala412Val
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1640C>T
  hgvsp: ENSP00000369136.3:p.Ala547Val
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1640C>T
  hgvsp: ENSP00000428579.2:p.Ala547Val
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.1022C>T
  hgvsp: ENSP00000428955.1:p.Ala341Val
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1640C>T
  hgvsp: ENSP00000447224.1:p.Ala547Val
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1640C>T
  hgvsp: ENSP00000447548.1:p.Ala547Val
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10483
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2325
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala547Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

19-16861094-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861094
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861094
    reference: chr 19
allele count: 1
allele frequency: 8.447087444249223e-6
allele num: 118384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1477C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1641C>T
  hgvsp: ENST00000524140.2:c.1641C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1641C>T
  hgvsp: ENST00000379808.3:c.1641C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1641C>T
  hgvsp: ENST00000549814.1:c.1641C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.1023C>T
  hgvsp: ENST00000523826.1:c.1023C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1236C>T
  hgvsp: ENST00000339803.6:c.1236C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1530C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1641C>T
  hgvsp: ENST00000552788.1:c.1641C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29661
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2349
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8338
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala547Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

19-16861103-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861103
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861103
    reference: chr 19
allele count: 3
allele frequency: 2.539532048894457e-5
allele num: 118132
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1539C>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1650C>G
  hgvsp: ENST00000552788.1:c.1650C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1650C>G
  hgvsp: ENST00000549814.1:c.1650C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1486C>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1245C>G
  hgvsp: ENST00000339803.6:c.1245C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1650C>G
  hgvsp: ENST00000524140.2:c.1650C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.1032C>G
  hgvsp: ENST00000523826.1:c.1032C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1650C>G
  hgvsp: ENST00000379808.3:c.1650C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr550Thr
num of homozygotes: 1
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

19-16861103-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861103
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861103
    reference: chr 19
allele count: 12
allele frequency: 1.015812819557783e-4
allele num: 118132
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1539C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.1032C>T
  hgvsp: ENST00000523826.1:c.1032C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1650C>T
  hgvsp: ENST00000524140.2:c.1650C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1650C>T
  hgvsp: ENST00000552788.1:c.1650C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1650C>T
  hgvsp: ENST00000379808.3:c.1650C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1245C>T
  hgvsp: ENST00000339803.6:c.1245C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1486C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1650C>T
  hgvsp: ENST00000549814.1:c.1650C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10252
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14295
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2534
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr550Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/19-16861114-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861114
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861114
    reference: chr 19
allele count: 1
allele frequency: 8.483347189467077e-6
allele num: 117878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1256C>A
  hgvsp: ENSP00000340159.6:p.Pro419Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1661C>A
  hgvsp: ENSP00000447224.1:p.Pro554Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1497C>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1661C>A
  hgvsp: ENSP00000428579.2:p.Pro554Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1550C>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1661C>A
  hgvsp: ENSP00000369136.3:p.Pro554Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.1043C>A
  hgvsp: ENSP00000428955.1:p.Pro348Gln
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1661C>A
  hgvsp: ENSP00000447548.1:p.Pro554Gln
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28554
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7847
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro554Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

19-16861114-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861114
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861114
    reference: chr 19
allele count: 1
allele frequency: 8.483347189467077e-6
allele num: 117878
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1497C>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.1043C>G
  hgvsp: ENSP00000428955.1:p.Pro348Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1661C>G
  hgvsp: ENSP00000369136.3:p.Pro554Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1661C>G
  hgvsp: ENSP00000428579.2:p.Pro554Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1661C>G
  hgvsp: ENSP00000447224.1:p.Pro554Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1256C>G
  hgvsp: ENSP00000340159.6:p.Pro419Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1550C>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1661C>G
  hgvsp: ENSP00000447548.1:p.Pro554Arg
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41349
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7847
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1456
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro554Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD

19-16861114-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861114
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861114
    reference: chr 19
allele count: 4
allele frequency: 3.393338875786831e-5
allele num: 117878
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1661C>T
  hgvsp: ENSP00000447548.1:p.Pro554Leu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1661C>T
  hgvsp: ENSP00000369136.3:p.Pro554Leu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1661C>T
  hgvsp: ENSP00000428579.2:p.Pro554Leu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.1043C>T
  hgvsp: ENSP00000428955.1:p.Pro348Leu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1256C>T
  hgvsp: ENSP00000340159.6:p.Pro419Leu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1497C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1661C>T
  hgvsp: ENSP00000447224.1:p.Pro554Leu
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1550C>T
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9850
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14847
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41349
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1456
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7847
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro554Leu
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP

19-16861115-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861115
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861115
    reference: chr 19
allele count: 4
allele frequency: 3.395239873697077e-5
allele num: 117812
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1662G>A
  hgvsp: ENST00000549814.1:c.1662G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1498G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1551G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1662G>A
  hgvsp: ENST00000552788.1:c.1662G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.1044G>A
  hgvsp: ENST00000523826.1:c.1044G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1257G>A
  hgvsp: ENST00000339803.6:c.1257G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1662G>A
  hgvsp: ENST00000524140.2:c.1662G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1662G>A
  hgvsp: ENST00000379808.3:c.1662G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2753
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro554Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP

19-16861116-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861116
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861116
    reference: chr 19
allele count: 2
allele frequency: 1.696698225253656e-5
allele num: 117876
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1258C>T
  hgvsp: ENST00000339803.6:c.1258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1663C>T
  hgvsp: ENST00000549814.1:c.1663C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.1045C>T
  hgvsp: ENST00000523826.1:c.1045C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1663C>T
  hgvsp: ENST00000524140.2:c.1663C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1663C>T
  hgvsp: ENST00000379808.3:c.1663C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1552C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1663C>T
  hgvsp: ENST00000552788.1:c.1663C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1499C>T
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28517
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu555Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

19-16861118-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861118
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861118
    reference: chr 19
allele count: 4
allele frequency: 3.394778830159215e-5
allele num: 117828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1665G>A
  hgvsp: ENST00000379808.3:c.1665G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1665G>A
  hgvsp: ENST00000549814.1:c.1665G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1260G>A
  hgvsp: ENST00000339803.6:c.1260G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1554G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1665G>A
  hgvsp: ENST00000552788.1:c.1665G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1665G>A
  hgvsp: ENST00000524140.2:c.1665G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.1047G>A
  hgvsp: ENST00000523826.1:c.1047G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1501G>A
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9651
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7754
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu555Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

http://identifiers.org/exac.variant/19-16861120-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861120
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861120
    reference: chr 19
allele count: 3
allele frequency: 2.54790052996331e-5
allele num: 117744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1503C>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1667C>A
  hgvsp: ENSP00000447548.1:p.Ala556Asp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1667C>A
  hgvsp: ENSP00000369136.3:p.Ala556Asp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.1049C>A
  hgvsp: ENSP00000428955.1:p.Ala350Asp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1556C>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1262C>A
  hgvsp: ENSP00000340159.6:p.Ala421Asp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1667C>A
  hgvsp: ENSP00000428579.2:p.Ala556Asp
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1667C>A
  hgvsp: ENSP00000447224.1:p.Ala556Asp
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9609
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28384
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala556Asp
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

19-16861127-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861127
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861127
    reference: chr 19
allele count: 5
allele frequency: 4.255464015796283e-5
allele num: 117496
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1674C>T
  hgvsp: ENST00000524140.2:c.1674C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1674C>T
  hgvsp: ENST00000379808.3:c.1674C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.1056C>T
  hgvsp: ENST00000523826.1:c.1056C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1674C>T
  hgvsp: ENST00000549814.1:c.1674C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1563C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1674C>T
  hgvsp: ENST00000552788.1:c.1674C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1269C>T
  hgvsp: ENST00000339803.6:c.1269C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1510C>T
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9420
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr558Thr
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-16861128-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861128
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861128
    reference: chr 19
allele count: 3
allele frequency: 2.556367912469963e-5
allele num: 117354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1564G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1675G>A
  hgvsp: ENSP00000369136.3:p.Ala559Thr
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1675G>A
  hgvsp: ENSP00000447224.1:p.Ala559Thr
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.1057G>A
  hgvsp: ENSP00000428955.1:p.Ala353Thr
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1511G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1675G>A
  hgvsp: ENSP00000447548.1:p.Ala559Thr
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1675G>A
  hgvsp: ENSP00000428579.2:p.Ala559Thr
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1270G>A
  hgvsp: ENSP00000340159.6:p.Ala424Thr
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15087
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1624
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala559Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ

19-16861141-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861141
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861141
    reference: chr 19
allele count: 1
allele frequency: 8.559884955146204e-6
allele num: 116824
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1283C>G
  hgvsp: ENSP00000340159.6:p.Thr428Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1688C>G
  hgvsp: ENSP00000428579.2:p.Thr563Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.1070C>G
  hgvsp: ENSP00000428955.1:p.Thr357Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1577C>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1688C>G
  hgvsp: ENSP00000369136.3:p.Thr563Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1688C>G
  hgvsp: ENSP00000447224.1:p.Thr563Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1688C>G
  hgvsp: ENSP00000447548.1:p.Thr563Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1524C>G
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8986
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3636
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7108
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr563Arg
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

19-16861141-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861141
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861141
    reference: chr 19
allele count: 802
allele frequency: 6.865027734027255e-3
allele num: 116824
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1577C>T
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1688C>T
  hgvsp: ENSP00000447224.1:p.Thr563Met
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.1070C>T
  hgvsp: ENSP00000428955.1:p.Thr357Met
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1688C>T
  hgvsp: ENSP00000428579.2:p.Thr563Met
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1688C>T
  hgvsp: ENSP00000447548.1:p.Thr563Met
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1283C>T
  hgvsp: ENSP00000340159.6:p.Thr428Met
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1688C>T
  hgvsp: ENSP00000369136.3:p.Thr563Met
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1524C>T
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 1.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.25e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 3.75e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 8986
  bin: 3.25e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 27055
  bin: 2.75e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15266
  bin: 2.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3636
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 5.75e1
  variant carriers: 1
hgvs: p.Thr563Met
num of homozygotes: 6
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-16861142-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861142
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861142
    reference: chr 19
allele count: 3
allele frequency: 2.56910903298736e-5
allele num: 116772
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.1071G>A
  hgvsp: ENST00000523826.1:c.1071G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1525G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1689G>A
  hgvsp: ENST00000552788.1:c.1689G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1284G>A
  hgvsp: ENST00000339803.6:c.1284G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1578G>A
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1689G>A
  hgvsp: ENST00000549814.1:c.1689G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1689G>A
  hgvsp: ENST00000379808.3:c.1689G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1689G>A
  hgvsp: ENST00000524140.2:c.1689G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8948
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27335
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3710
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr563Thr
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-16861144-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16861144
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 16861144
    reference: chr 19
allele count: 3
allele frequency: 2.570429775858523e-5
allele num: 116712
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447224
  ensembl transcript: ENST00000552788
  gene symbol: NWD1
  hgvsc: ENST00000552788.1:c.1691A>G
  hgvsp: ENSP00000447224.1:p.His564Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428224
  ensembl transcript: ENST00000518676
  gene symbol: NWD1
  hgvsc: ENST00000518676.1:c.*1580A>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000400248
  ensembl transcript: ENST00000438489
  gene symbol: NWD1
  hgvsc: ENST00000438489.2:c.*1527A>G
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428955
  ensembl transcript: ENST00000523826
  gene symbol: NWD1
  hgvsc: ENST00000523826.1:c.1073A>G
  hgvsp: ENSP00000428955.1:p.His358Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000447548
  ensembl transcript: ENST00000549814
  gene symbol: NWD1
  hgvsc: ENST00000549814.1:c.1691A>G
  hgvsp: ENSP00000447548.1:p.His564Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000369136
  ensembl transcript: ENST00000379808
  gene symbol: NWD1
  hgvsc: ENST00000379808.3:c.1691A>G
  hgvsp: ENSP00000369136.3:p.His564Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000428579
  ensembl transcript: ENST00000524140
  gene symbol: NWD1
  hgvsc: ENST00000524140.2:c.1691A>G
  hgvsp: ENSP00000428579.2:p.His564Arg
  variant of: http://identifiers.org/hgnc/27619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188039
  ensembl protein: ENSP00000340159
  ensembl transcript: ENST00000339803
  gene symbol: NWD1
  hgvsc: ENST00000339803.6:c.1286A>G
  hgvsp: ENSP00000340159.6:p.His429Arg
  variant of: http://identifiers.org/hgnc/27619
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15489
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2975
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 3.75e1
  variant carriers: 1
hgvs: p.His564Arg
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 1830
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43667
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2253
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8779
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.566627089231893e-5
allele num: 65694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.64e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: 4.98e-1

QD
type: SiteQuality
SIO_000300: 1.301e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.28e-1

FS
type: SiteQuality
SIO_000300: 1.202e0

DP
type: SiteQuality
SIO_000300: 1.64766e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

GenotypeQuality
all individuals: 158
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1692
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2128
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2258
bin: 9.75e1
variant carriers: 1744

GenotypeQuality
all individuals: 43255
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 643
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 85
allele frequency: 5.16215231385886e-3
allele num: 16466
num of homozygotes: 2

Latino
type: Population
allele count: 78
allele frequency: 6.749740394600207e-3
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 16
allele frequency: 1.78173719376392e-2
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 132
allele frequency: 1.995766555790747e-2
allele num: 6614
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 1409
allele frequency: 2.143487388566039e-2
allele num: 65734
num of homozygotes: 11

African
type: Population
allele count: 42
allele frequency: 4.143646408839779e-3
allele num: 10136
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.765879e6

MQ
type: SiteQuality
SIO_000300: 5.971e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.009e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.05e0

QD
type: SiteQuality
SIO_000300: 1.262e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
all individuals: 142
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 204
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8862
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2201
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44429
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521792062332603e-5
allele num: 65712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.326756663205261e-4
allele num: 11556
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.273e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.39e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 1.630856e6

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8879
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44517
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2200
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 903
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520958812435359e-5
allele num: 65748
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 1.304e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.213e0

VQSLOD
type: SiteQuality
SIO_000300: 6.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

FS
type: SiteQuality
SIO_000300: 6.823e0

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

DP
type: SiteQuality
SIO_000300: 1.631411e6

GenotypeQuality
all individuals: 115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8879
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2200
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44517
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.861932938856015e-5
allele num: 10140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.823e0

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.959e1

VQSLOD
type: SiteQuality
SIO_000300: 6.55e-1

DP
type: SiteQuality
SIO_000300: 1.631411e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.213e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

QD
type: SiteQuality
SIO_000300: 1.304e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

GenotypeQuality
all individuals: 1757
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2193
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8880
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 9.75e1
variant carriers: 297

African
type: Population
allele count: 252
allele frequency: 2.477388910735352e-2
allele num: 10172
num of homozygotes: 5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 33
allele frequency: 5.018248175182482e-4
allele num: 65760
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16198001394376e-4
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 1.384562132225684e-3
allele num: 11556
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.71e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.64e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

DP
type: SiteQuality
SIO_000300: 1.645868e6

QD
type: SiteQuality
SIO_000300: 1.388e1

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8925
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1772
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10176
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.19e-1

FS
type: SiteQuality
SIO_000300: 3.461e0

DP
type: SiteQuality
SIO_000300: 1.627971e6

VQSLOD
type: SiteQuality
SIO_000300: 6.27e-1

QD
type: SiteQuality
SIO_000300: 1.396e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.7e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8928
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44829
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2203
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65782
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 5.905e1

QD
type: SiteQuality
SIO_000300: 1.438e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.921e0

VQSLOD
type: SiteQuality
SIO_000300: 2.7e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.12e-1

DP
type: SiteQuality
SIO_000300: 1.627864e6

GenotypeQuality
all individuals: 44793
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2202
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8930
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519849230956289e-5
allele num: 65796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.62783e6

FS
type: SiteQuality
SIO_000300: 2.486e0

VQSLOD
type: SiteQuality
SIO_000300: 6.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.91e-1

QD
type: SiteQuality
SIO_000300: 1.208e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.028e0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8925
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1767
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519756838905775e-5
allele num: 65800
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.015e0

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

QD
type: SiteQuality
SIO_000300: 6.58e0

DP
type: SiteQuality
SIO_000300: 1.628033e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.206e0

VQSLOD
type: SiteQuality
SIO_000300: -1.368e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 386
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 87
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2195
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8914
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519987840097279e-5
allele num: 65790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

VQSLOD
type: SiteQuality
SIO_000300: -1.995e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.158e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.628338e6

QD
type: SiteQuality
SIO_000300: 2.46e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 44868
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8921
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16198001394376e-4
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65808
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.803921568627451e-5
allele num: 10200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.727e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.64e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.35e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.74e-1

DP
type: SiteQuality
SIO_000300: 1.628859e6

QD
type: SiteQuality
SIO_000300: 1.001e1

GenotypeQuality
all individuals: 682
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2197
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 141
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44847
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519710647092794e-5
allele num: 65802
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.5409e1

DP
type: SiteQuality
SIO_000300: 1.628622e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.63e-1

QD
type: SiteQuality
SIO_000300: 1.117e1

MQRankSum
type: SiteQuality
SIO_000300: 5.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.973e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-2

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2199
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1777
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 240
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519110408944522e-5
allele num: 65828
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
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SIO_000300: 1.307e1

MQRankSum
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SIO_000300: -1.718e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 2.121e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.933e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.348e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.956564273136372e-4
allele num: 10222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65844
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

QD
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SIO_000300: 1.324e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-2

FS
type: SiteQuality
SIO_000300: 4.004e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.64e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.629367e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.65e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.32396002788752e-4
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.925e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.347e0

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.62983e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.47e-1

FS
type: SiteQuality
SIO_000300: 3.974e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.95e-1

QD
type: SiteQuality
SIO_000300: 1.348e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 239
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51851064475962e-5
allele num: 65854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.94e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.077e0

FS
type: SiteQuality
SIO_000300: 2.766e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

VQSLOD
type: SiteQuality
SIO_000300: -2.359e-1

QD
type: SiteQuality
SIO_000300: 1.013e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.629604e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 382
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variant carriers: 3

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.821272462360369e-4
allele num: 16472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65832
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.45e-1

QD
type: SiteQuality
SIO_000300: 1.21e1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e-1

DP
type: SiteQuality
SIO_000300: 1.629207e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.209e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 1.823e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1764
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.484320557491289e-4
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65834
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.071645415907711e-5
allele num: 16470
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.107e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.31e-1

FS
type: SiteQuality
SIO_000300: 6.236e0

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.32e1

DP
type: SiteQuality
SIO_000300: 1.629401e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519618271890101e-5
allele num: 65806
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.627371e6

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.49e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.37e-1

FS
type: SiteQuality
SIO_000300: 3.698e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.574e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.91e-1

MQ
type: SiteQuality
SIO_000300: 5.878e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -6.624e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.484320557491289e-4
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.767532721234616e-5
allele num: 10238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.559409100580564e-5
allele num: 65798
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 894
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South Asian
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allele count: 0
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.627625e6

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.953e1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.88e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.080321040950962e-5
allele num: 65786
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.771350400625366e-5
allele num: 10234
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 894
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South Asian
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allele count: 5
allele frequency: 3.035822707953856e-4
allele num: 16470
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.971e1

QD
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2175
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44383
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 8849
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 13
allele frequency: 1.509872241579559e-3
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.805e0

DP
type: SiteQuality
SIO_000300: 1.622197e6

QD
type: SiteQuality
SIO_000300: 1.446e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.9e-1

GenotypeQuality
all individuals: 1141
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1747
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
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GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2175
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 9.75e1
variant carriers: 3

South Asian
type: Population
allele count: 1
allele frequency: 6.085686465433301e-5
allele num: 16432
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.960399921584003e-4
allele num: 10202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.12e-1

FS
type: SiteQuality
SIO_000300: 3.505e0

QD
type: SiteQuality
SIO_000300: 1.247e1

VQSLOD
type: SiteQuality
SIO_000300: 9.72e-1

DP
type: SiteQuality
SIO_000300: 1.620252e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.287e0

MQRankSum
type: SiteQuality
SIO_000300: 5.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8843
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2175
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 234
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.801999607920016e-5
allele num: 10202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65644
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.287e0

DP
type: SiteQuality
SIO_000300: 1.620252e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.505e0

MQRankSum
type: SiteQuality
SIO_000300: 5.54e-1

QD
type: SiteQuality
SIO_000300: 1.247e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.72e-1

GenotypeQuality
all individuals: 8810
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43662
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variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
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variant carriers: 0

GenotypeQuality
all individuals: 156
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 662
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variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2171
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 116
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.730403183941858e-4
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

DP
type: SiteQuality
SIO_000300: 1.614868e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.28e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.248e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.26e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.887e1

GenotypeQuality
all individuals: 8731
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2155
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1726
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variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
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variant carriers: 0

GenotypeQuality
all individuals: 395
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variant carriers: 0

GenotypeQuality
all individuals: 231
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variant carriers: 0

GenotypeQuality
all individuals: 359
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variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.937007874015748e-4
allele num: 10160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.546e1

MQRankSum
type: SiteQuality
SIO_000300: -1.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 2.24e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

DP
type: SiteQuality
SIO_000300: 1.612225e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.737e0

GenotypeQuality
all individuals: 95
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2147
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1388
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
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variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8711
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
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variant carriers: 0

GenotypeQuality
all individuals: 43064
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1724
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 27
allele frequency: 2.65748031496063e-3
allele num: 10160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.382e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.69e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.609277e6

MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

QD
type: SiteQuality
SIO_000300: 1.334e1

GenotypeQuality
all individuals: 658
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 348
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8692
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1715
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 9.75e1
variant carriers: 38

GenotypeQuality
all individuals: 43317
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 38
allele frequency: 4.412447747329308e-3
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

DP
type: SiteQuality
SIO_000300: 1.609092e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.11e-1

QD
type: SiteQuality
SIO_000300: 1.429e1

FS
type: SiteQuality
SIO_000300: 2.473e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.73e-1

GenotypeQuality
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8692
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43044
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2147
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1714
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65432
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.117704637220115e-5
allele num: 16346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.621e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.565e0

QD
type: SiteQuality
SIO_000300: 1.258e1

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

VQSLOD
type: SiteQuality
SIO_000300: 6.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

DP
type: SiteQuality
SIO_000300: 1.606154e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.83e-1

GenotypeQuality
all individuals: 1553
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8657
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 356
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.887284951552304e-5
allele num: 10114
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.061943109097033e-5
allele num: 65318
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.601008e6

QD
type: SiteQuality
SIO_000300: 1.228e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

FS
type: SiteQuality
SIO_000300: 5.348e0

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 140
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42289
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2133
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.887284951552304e-5
allele num: 10114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16318
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

FS
type: SiteQuality
SIO_000300: 5.348e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

QD
type: SiteQuality
SIO_000300: 1.228e1

DP
type: SiteQuality
SIO_000300: 1.601008e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.32e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2135
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.531393568147014e-4
allele num: 6530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16318
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

FS
type: SiteQuality
SIO_000300: 2.3972e1

QD
type: SiteQuality
SIO_000300: 1.255e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

VQSLOD
type: SiteQuality
SIO_000300: -3.771e0

DP
type: SiteQuality
SIO_000300: 1.600238e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.19e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 181
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variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530830935031535e-5
allele num: 65324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.998e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

DP
type: SiteQuality
SIO_000300: 1.600327e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.39e-1

QD
type: SiteQuality
SIO_000300: 1.493e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.07e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 182
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variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.13421666053245e-5
allele num: 16302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.596952908587258e-4
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532473105097006e-5
allele num: 65254
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

DP
type: SiteQuality
SIO_000300: 1.598938e6

FS
type: SiteQuality
SIO_000300: 1.739e0

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
type: SiteQuality
SIO_000300: 6.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.17e-1

QD
type: SiteQuality
SIO_000300: 1.412e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.71e-1

GenotypeQuality
all individuals: 328
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
all individuals: 1699
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.065134099616858e-5
allele num: 65250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.224889759921607e-4
allele num: 16328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.68521364893944e-4
allele num: 6506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.07e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

DP
type: SiteQuality
SIO_000300: 1.598423e6

VQSLOD
type: SiteQuality
SIO_000300: 5.33e0

QD
type: SiteQuality
SIO_000300: 1.33e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.72e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 222
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.9147332936744e-5
allele num: 10086
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.36e-1

DP
type: SiteQuality
SIO_000300: 1.598423e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.33e0

QD
type: SiteQuality
SIO_000300: 1.33e1

MQ
type: SiteQuality
SIO_000300: 5.953e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

FS
type: SiteQuality
SIO_000300: 2.468e0

VQSLOD
type: SiteQuality
SIO_000300: 5.41e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.597444e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.83e-1

QD
type: SiteQuality
SIO_000300: 1.104e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
all individuals: 185
bin: 9.25e1
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GenotypeQuality
all individuals: 331
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 221
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10076
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.224739742804654e-4
allele num: 16330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65220
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.62e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.352e1

FS
type: SiteQuality
SIO_000300: 1.799e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.34e-1

DP
type: SiteQuality
SIO_000300: 1.596998e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.19e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
all individuals: 2119
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 202
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GenotypeQuality
all individuals: 172
bin: 5.75e1
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GenotypeQuality
all individuals: 495
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GenotypeQuality
all individuals: 235
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GenotypeQuality
all individuals: 183
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534118802160039e-5
allele num: 65184
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

FS
type: SiteQuality
SIO_000300: 2.669e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 1.596699e6

MQRankSum
type: SiteQuality
SIO_000300: 4.18e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

QD
type: SiteQuality
SIO_000300: 9.779999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 6.860000000000001e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10044
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65106
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-1

QD
type: SiteQuality
SIO_000300: 1.165e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

DP
type: SiteQuality
SIO_000300: 1.594681e6

MQ
type: SiteQuality
SIO_000300: 5.981e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.001602564102564e-4
allele num: 9984
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.66e-1

QD
type: SiteQuality
SIO_000300: 1.423e1

MQ
type: SiteQuality
SIO_000300: 5.148e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.597814e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.051e0

MQRankSum
type: SiteQuality
SIO_000300: -7.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 246
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.003009027081244e-4
allele num: 9970
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.61e-1

DP
type: SiteQuality
SIO_000300: 1.598008e6

FS
type: SiteQuality
SIO_000300: 8.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.683e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.28e-1

QD
type: SiteQuality
SIO_000300: 1.317e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1612
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542305438168975e-5
allele num: 64838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e-1

QD
type: SiteQuality
SIO_000300: 1.216e1

DP
type: SiteQuality
SIO_000300: 1.599218e6

FS
type: SiteQuality
SIO_000300: 1.136e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.99e0

GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.0960741282614e-5
allele num: 16404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.169221752675899e-5
allele num: 64838
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.060606060606061e-4
allele num: 9900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 880
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.99e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.216e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.17e-1

FS
type: SiteQuality
SIO_000300: 1.136e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

DP
type: SiteQuality
SIO_000300: 1.599218e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.628915290850178e-5
allele num: 64810
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.012555690562981e-4
allele num: 9876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.133786848072562e-3
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.601005722212589e-4
allele num: 11534
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.320000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 2.492e0

MQRankSum
type: SiteQuality
SIO_000300: 4.85e-1

QD
type: SiteQuality
SIO_000300: 1.241e1

VQSLOD
type: SiteQuality
SIO_000300: 2.1e0

DP
type: SiteQuality
SIO_000300: 1.597482e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.087168249330411e-5
allele num: 16428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
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allele num: 11532
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6372
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9892
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MQRankSum
type: SiteQuality
SIO_000300: -4.07e-1

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 3.456e0

QD
type: SiteQuality
SIO_000300: 1.099e1

MQ
type: SiteQuality
SIO_000300: 5.919e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 178
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541069502234551e-5
allele num: 64890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-2

DP
type: SiteQuality
SIO_000300: 1.597789e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.64e0

GenotypeQuality
all individuals: 2057
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1868
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43495
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.008674601573532e-4
allele num: 9914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.975e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.59e-1

QD
type: SiteQuality
SIO_000300: 1.571e1

FS
type: SiteQuality
SIO_000300: 1.1683e1

DP
type: SiteQuality
SIO_000300: 1.596691e6

MQRankSum
type: SiteQuality
SIO_000300: -4.62e-1

GenotypeQuality
all individuals: 360
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1907
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1703
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43405
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.083089255433945e-5
allele num: 64870
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9910
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.577784790154623e-4
allele num: 6338
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.326122354035822e-4
allele num: 8598
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.129e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.206e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

DP
type: SiteQuality
SIO_000300: 1.595666e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

QD
type: SiteQuality
SIO_000300: 1.276e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.85e-1

GenotypeQuality
all individuals: 42830
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8470
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2132
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2016
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1649
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.26126014879758e-5
allele num: 64786
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.011122345803842e-4
allele num: 9890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213739531496541e-4
allele num: 16478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16333178222429e-4
allele num: 8596
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 4.253e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.11e-1

DP
type: SiteQuality
SIO_000300: 1.58861e6

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

QD
type: SiteQuality
SIO_000300: 1.428e1

GenotypeQuality
all individuals: 2146
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
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variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1637
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
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variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 9.75e1
variant carriers: 79

GenotypeQuality
all individuals: 8439
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 6
allele frequency: 5.221023320570832e-4
allele num: 11492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6302
num of homozygotes: 0

African
type: Population
allele count: 66
allele frequency: 6.672058228871815e-3
allele num: 9892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.258116281940501e-5
allele num: 64808
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.588467e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.25e0

FS
type: SiteQuality
SIO_000300: 1.135e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

QD
type: SiteQuality
SIO_000300: 1.312e1

GenotypeQuality
all individuals: 208
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1632
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
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variant carriers: 1

GenotypeQuality
all individuals: 8416
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variant carriers: 0

GenotypeQuality
all individuals: 431
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variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 2260
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variant carriers: 0

GenotypeQuality
all individuals: 42798
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variant carriers: 0

GenotypeQuality
all individuals: 619
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variant carriers: 0

GenotypeQuality
all individuals: 344
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variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164144353899884e-4
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.352e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.805e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

QD
type: SiteQuality
SIO_000300: 1.328e1

VQSLOD
type: SiteQuality
SIO_000300: 3.38e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.26e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

DP
type: SiteQuality
SIO_000300: 1.582037e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

GenotypeQuality
all individuals: 248
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2277
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1993
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variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 163
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variant carriers: 0

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 8376
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variant carriers: 0

GenotypeQuality
all individuals: 1605
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variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64816
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.011736139214893e-4
allele num: 9884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.58023e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.007e0

FS
type: SiteQuality
SIO_000300: 4.676e0

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.29e0

QD
type: SiteQuality
SIO_000300: 1.583e1

GenotypeQuality
all individuals: 138
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1596
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variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 42427
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8330
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.069434328720563e-5
allele num: 16476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.577911e6

QD
type: SiteQuality
SIO_000300: 1.933e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.48e-1

MQ
type: SiteQuality
SIO_000300: 5.927e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.28e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.247e0

GenotypeQuality
all individuals: 518
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1985
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 7.5e0
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GenotypeQuality
all individuals: 601
bin: 8.25e1
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GenotypeQuality
all individuals: 273
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 9.25e1
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GenotypeQuality
all individuals: 42625
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1596
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.069434328720563e-5
allele num: 16476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9886
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 1.706e1

FS
type: SiteQuality
SIO_000300: 3.862e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.46e-1

DP
type: SiteQuality
SIO_000300: 1.577492e6

VQSLOD
type: SiteQuality
SIO_000300: 1.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

GenotypeQuality
all individuals: 663
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1919
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variant carriers: 0

GenotypeQuality
all individuals: 2534
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41391
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 8089
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1534
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 612
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545786186854634e-5
allele num: 64692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214624073849144e-4
allele num: 16466
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 1.757e0

QD
type: SiteQuality
SIO_000300: 1.511e1

DP
type: SiteQuality
SIO_000300: 1.566966e6

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.2e-1

GenotypeQuality
all individuals: 487
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8089
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 178
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1534
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1919
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 41391
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.426735218508997e-4
allele num: 6224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.618257985686857e-4
allele num: 11458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.728930934273171e-5
allele num: 64692
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 1.566966e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 1.757e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

QD
type: SiteQuality
SIO_000300: 1.511e1

VQSLOD
type: SiteQuality
SIO_000300: 9.2e-1

GenotypeQuality
all individuals: 2733
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 7.5e0
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GenotypeQuality
all individuals: 771
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1810
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41349
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 9.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548562933597621e-5
allele num: 64576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.429e0

DP
type: SiteQuality
SIO_000300: 1.553124e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-2

QD
type: SiteQuality
SIO_000300: 1.198e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 511
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2733
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1810
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548562933597621e-5
allele num: 64576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9810
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6192
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

DP
type: SiteQuality
SIO_000300: 1.553124e6

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-2

FS
type: SiteQuality
SIO_000300: 5.429e0

QD
type: SiteQuality
SIO_000300: 1.198e1

GenotypeQuality
all individuals: 771
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1810
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2733
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 398
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9810
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.194251734390486e-5
allele num: 64576
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

QD
type: SiteQuality
SIO_000300: 1.198e1

FS
type: SiteQuality
SIO_000300: 5.429e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-2

DP
type: SiteQuality
SIO_000300: 1.553124e6

GenotypeQuality
all individuals: 150
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41718
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 510
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 5.75e1
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GenotypeQuality
all individuals: 1781
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.5e0
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GenotypeQuality
all individuals: 765
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7753
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.433386056697895e-4
allele num: 16438
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

FS
type: SiteQuality
SIO_000300: 1.893e0

MQRankSum
type: SiteQuality
SIO_000300: -5.87e-1

QD
type: SiteQuality
SIO_000300: 1.173e1

DP
type: SiteQuality
SIO_000300: 1.552804e6

GenotypeQuality
all individuals: 665
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41718
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2802
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1788
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7802
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.096454559529339e-5
allele num: 64590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.549041e6

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.19e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.296e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

QD
type: SiteQuality
SIO_000300: 1.419e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.6e-2

GenotypeQuality
all individuals: 782
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2847
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 5.75e1
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GenotypeQuality
all individuals: 159
bin: 7.5e0
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GenotypeQuality
all individuals: 580
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variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41472
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1771
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.645976584278015e-5
allele num: 64572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.088650754992694e-5
allele num: 16424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.503e0

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.06e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.526e0

DP
type: SiteQuality
SIO_000300: 1.54625e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.55e-1

GenotypeQuality
all individuals: 41614
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2876
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1369
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 5.75e1
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GenotypeQuality
all individuals: 218
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 776
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1738
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7695
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.648280136349551e-5
allele num: 64540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6182
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.544801e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.7e-1

QD
type: SiteQuality
SIO_000300: 1.142e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.355e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.41e-1

FS
type: SiteQuality
SIO_000300: 7.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.97e-1

GenotypeQuality
all individuals: 668
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3099
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7521
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 41242
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.75284837861525e-4
allele num: 11410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.656649695765553e-5
allele num: 64424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6168
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.255000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

DP
type: SiteQuality
SIO_000300: 1.536461e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.95e-1

QD
type: SiteQuality
SIO_000300: 1.25e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

VQSLOD
type: SiteQuality
SIO_000300: -2.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
all individuals: 884
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 875
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40945
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3142
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7416
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.137228427642077e-5
allele num: 16294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6164
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169043722235212e-4
allele num: 8554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.553277415346381e-5
allele num: 64380
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.12e0

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.96e-1

DP
type: SiteQuality
SIO_000300: 1.534107e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

QD
type: SiteQuality
SIO_000300: 1.122e1

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
all individuals: 96
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40217
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1469
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9660
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.629726205997392e-4
allele num: 6136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16068
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.24e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.518922e6

MQRankSum
type: SiteQuality
SIO_000300: 1.41e-1

QD
type: SiteQuality
SIO_000300: 1.327e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.5e-2

GenotypeQuality
all individuals: 965
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 196
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7108
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 500
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 726
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 854
bin: 9.75e1
variant carriers: 786

GenotypeQuality
all individuals: 65
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 701
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40217
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1469
bin: 7.25e1
variant carriers: 5

Latino
type: Population
allele count: 21
allele frequency: 1.848591549295775e-3
allele num: 11360
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 9.316770186335404e-4
allele num: 9660
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 5.89622641509434e-3
allele num: 848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 15
allele frequency: 2.444589308996089e-3
allele num: 6136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 588
allele frequency: 9.156026160074743e-3
allele num: 64220
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

South Asian
type: Population
allele count: 164
allele frequency: 1.020662185710729e-2
allele num: 16068
num of homozygotes: 4

QD
type: SiteQuality
SIO_000300: 1.327e1

DP
type: SiteQuality
SIO_000300: 1.518922e6

VQSLOD
type: SiteQuality
SIO_000300: 4.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.24e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-1

GenotypeQuality
all individuals: 673
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1467
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1101
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7168
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41179
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6138
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.071251035625518e-4
allele num: 9656
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.228201295465869e-5
allele num: 16056
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.95e-1

QD
type: SiteQuality
SIO_000300: 1.269e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.509707e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-1