17-18862041-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862041
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862041
    reference: chr 17
allele count: 1
allele frequency: 8.247422680412371e-6
allele num: 121250
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.158C>T
  hgvsp: ENSP00000379008.2:p.Ala53Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.158C>T
  hgvsp: ENSP00000379007.3:p.Ala53Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.158C>T
  hgvsp: ENSP00000379005.2:p.Ala53Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.158C>T
  hgvsp: ENSP00000401875.2:p.Ala53Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.-11C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.-11C>T
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5832
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23545
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10313
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5300
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala53Val
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS

17-18862044-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862044
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862044
    reference: chr 17
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.161G>A
  hgvsp: ENSP00000379005.2:p.Gly54Asp
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.-8G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.161G>A
  hgvsp: ENSP00000379007.3:p.Gly54Asp
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.161G>A
  hgvsp: ENSP00000379008.2:p.Gly54Asp
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.161G>A
  hgvsp: ENSP00000401875.2:p.Gly54Asp
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.-8G>A
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5836
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3998
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10312
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23549
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5299
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4097
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly54Asp
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD

17-18862047-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862047
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862047
    reference: chr 17
allele count: 9
allele frequency: 7.422925292380779e-5
allele num: 121246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.164G>A
  hgvsp: ENSP00000379007.3:p.Arg55Gln
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.-5G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.164G>A
  hgvsp: ENSP00000401875.2:p.Arg55Gln
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.164G>A
  hgvsp: ENSP00000379005.2:p.Arg55Gln
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.164G>A
  hgvsp: ENSP00000379008.2:p.Arg55Gln
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.-5G>A
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11574
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8444
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1935
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10320
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23524
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg55Gln
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP

17-18862049-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862049
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862049
    reference: chr 17
allele count: 1
allele frequency: 8.248239000973292e-6
allele num: 121238
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.-3G>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.-3G>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.166G>T
  hgvsp: ENSP00000379007.3:p.Asp56Tyr
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.166G>T
  hgvsp: ENSP00000401875.2:p.Asp56Tyr
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.166G>T
  hgvsp: ENSP00000379005.2:p.Asp56Tyr
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.166G>T
  hgvsp: ENSP00000379008.2:p.Asp56Tyr
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5836
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8447
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23527
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10313
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1935
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp56Tyr
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-18862052-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862052
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862052
    reference: chr 17
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.1A>G
  hgvsp: ENSP00000324346.6:p.Met1?
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.169A>G
  hgvsp: ENSP00000379005.2:p.Met57Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.1A>G
  hgvsp: ENSP00000379004.1:p.Met1?
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.169A>G
  hgvsp: ENSP00000379008.2:p.Met57Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.169A>G
  hgvsp: ENSP00000401875.2:p.Met57Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.169A>G
  hgvsp: ENSP00000379007.3:p.Met57Val
  variant of: http://identifiers.org/hgnc/23155
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5835
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8441
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23523
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3995
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum

17-18862056-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862056
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862056
    reference: chr 17
allele count: 3
allele frequency: 2.475615190374808e-5
allele num: 121182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.5C>T
  hgvsp: ENSP00000324346.6:p.Thr2Met
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.173C>T
  hgvsp: ENSP00000379005.2:p.Thr58Met
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.173C>T
  hgvsp: ENSP00000379007.3:p.Thr58Met
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.173C>T
  hgvsp: ENSP00000401875.2:p.Thr58Met
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.5C>T
  hgvsp: ENSP00000379004.1:p.Thr2Met
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.173C>T
  hgvsp: ENSP00000379008.2:p.Thr58Met
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5837
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10314
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3996
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4092
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23371
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5286
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr58Met
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-18862057-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862057
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862057
    reference: chr 17
allele count: 4
allele frequency: 3.301256127956687e-5
allele num: 121166
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.174G>A
  hgvsp: ENST00000395645.3:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.174G>A
  hgvsp: ENST00000395647.2:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.174G>A
  hgvsp: ENST00000417251.2:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.6G>A
  hgvsp: ENST00000395642.1:c.6G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.174G>A
  hgvsp: ENST00000395643.2:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.6G>A
  hgvsp: ENST00000317977.6:c.6G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17738
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8420
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4092
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10314
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr58Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-18862065-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862065
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862065
    reference: chr 17
allele count: 1
allele frequency: 8.257092842751923e-6
allele num: 121108
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.14C>T
  hgvsp: ENSP00000324346.6:p.Pro5Leu
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.182C>T
  hgvsp: ENSP00000379005.2:p.Pro61Leu
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.182C>T
  hgvsp: ENSP00000379007.3:p.Pro61Leu
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.182C>T
  hgvsp: ENSP00000401875.2:p.Pro61Leu
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.182C>T
  hgvsp: ENSP00000379008.2:p.Pro61Leu
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.14C>T
  hgvsp: ENSP00000379004.1:p.Pro5Leu
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3986
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5284
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10309
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro61Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

17-18862066-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862066
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862066
    reference: chr 17
allele count: 1
allele frequency: 8.257911078813503e-6
allele num: 121096
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.183G>A
  hgvsp: ENST00000395645.3:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.15G>A
  hgvsp: ENST00000317977.6:c.15G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.183G>A
  hgvsp: ENST00000417251.2:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.15G>A
  hgvsp: ENST00000395642.1:c.15G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.183G>A
  hgvsp: ENST00000395643.2:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.183G>A
  hgvsp: ENST00000395647.2:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4086
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23189
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8392
  bin: 6.75e1
  variant carriers: 0
hgvs: c.183G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

17-18862066-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862066
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862066
    reference: chr 17
allele count: 2
allele frequency: 1.651582215762701e-5
allele num: 121096
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.183G>C
  hgvsp: ENST00000395643.2:c.183G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.183G>C
  hgvsp: ENST00000395647.2:c.183G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.15G>C
  hgvsp: ENST00000317977.6:c.15G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.183G>C
  hgvsp: ENST00000395645.3:c.183G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.183G>C
  hgvsp: ENST00000417251.2:c.183G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.15G>C
  hgvsp: ENST00000395642.1:c.15G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8392
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5277
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4086
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 2.25e1
  variant carriers: 0
hgvs: c.183G>C
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD

17-18862069-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862069
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862069
    reference: chr 17
allele count: 18
allele frequency: 1.486448544106231e-4
allele num: 121094
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.183+3G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.183+3G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.15+3G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.15+3G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.183+3G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.183+3G>A
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1935
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3970
  bin: 7.25e1
  variant carriers: 0
hgvs: c.183+3G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP

17-18862070-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862070
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862070
    reference: chr 17
allele count: 2
allele frequency: 1.65188231990353e-5
allele num: 121074
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.15+4A>G
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.183+4A>G
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.183+4A>G
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.15+4A>G
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.183+4A>G
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.183+4A>G
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17670
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1935
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2700
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8389
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.75e1
  variant carriers: 0
hgvs: c.183+4A>G
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

17-18862071-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862071
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862071
    reference: chr 17
allele count: 1
allele frequency: 8.260230295220631e-6
allele num: 121062
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.15+5G>C
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.183+5G>C
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.183+5G>C
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.183+5G>C
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.183+5G>C
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.15+5G>C
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2700
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10307
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3969
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
hgvs: c.183+5G>C
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/17-18862074-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862074
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862074
    reference: chr 17
allele count: 1
allele frequency: 8.264326209484141e-6
allele num: 121002
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.183+8C>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.183+8C>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.15+8C>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.183+8C>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.15+8C>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.183+8C>A
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5840
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22683
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3963
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8371
  bin: 6.75e1
  variant carriers: 0
hgvs: c.183+8C>A
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

17-18862076-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862076
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862076
    reference: chr 17
allele count: 1
allele frequency: 8.265009256810368e-6
allele num: 120992
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.183+10C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.15+10C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.183+10C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.183+10C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.15+10C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.183+10C>T
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5840
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1932
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4086
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8351
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3956
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22607
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP

17-18862079-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862079
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862079
    reference: chr 17
allele count: 1
allele frequency: 8.266102367411717e-6
allele num: 120976
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.183+13T>C
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.183+13T>C
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.15+13T>C
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.183+13T>C
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.183+13T>C
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.15+13T>C
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1934
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10307
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4085
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

17-18862082-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862082
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862082
    reference: chr 17
allele count: 2
allele frequency: 1.653630545863443e-5
allele num: 120946
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.15+16C>G
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.183+16C>G
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.183+16C>G
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.15+16C>G
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.183+16C>G
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.183+16C>G
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1933
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3946
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2694
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8289
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

17-18862085-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862085
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862085
    reference: chr 17
allele count: 2
allele frequency: 1.654232353476369e-5
allele num: 120902
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.15+19C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.15+19C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.183+19C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.183+19C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.183+19C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.183+19C>T
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5833
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11481
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14704
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4085
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1932
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8272
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5240
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21553
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/17-18862092-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862092
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862091
    reference: chr 17
allele count: 2
allele frequency: 1.655875875544369e-5
allele num: 120782
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.183+31delC
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.183+31delC
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.183+31delC
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.15+31delC
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.183+31delC
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.15+31delC
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5832
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16999
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5217
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8009
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3901
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4070
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: AC
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-18862093-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862093
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862093
    reference: chr 17
allele count: 1
allele frequency: 8.28349430923941e-6
allele num: 120722
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.183+27C>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.15+27C>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.15+27C>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.183+27C>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.183+27C>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.183+27C>A
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5214
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4069
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8009
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/17-18862094-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862094
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862094
    reference: chr 17
allele count: 276
allele frequency: 2.28590359450058e-3
allele num: 120740
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.183+28C>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.15+28C>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.183+28C>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.183+28C>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.15+28C>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.183+28C>A
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 13537
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 4.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5828
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 16841
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 4.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 5.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11392
  bin: 3.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 5.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1914
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2674
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3873
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10507
  bin: 9.75e1
  variant carriers: 269
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7944
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 3
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

17-18862094-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862094
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862094
    reference: chr 17
allele count: 1
allele frequency: 8.28225940036442e-6
allele num: 120740
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.183+28C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.183+28C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.183+28C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.15+28C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.15+28C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.183+28C>T
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3873
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1914
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19885
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7944
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

17-18862097-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862097
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862097
    reference: chr 17
allele count: 1
allele frequency: 8.285690612312537e-6
allele num: 120690
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.183+31C>G
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.183+31C>G
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.183+31C>G
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.183+31C>G
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.15+31C>G
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.15+31C>G
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11413
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10302
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4059
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3854
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1921
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

17-18862099-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862099
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862099
    reference: chr 17
allele count: 1
allele frequency: 8.286651861182008e-6
allele num: 120676
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.15+33C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.183+33C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.183+33C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.15+33C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.183+33C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.183+33C>T
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18816
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3854
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2688
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7704
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1921
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

17-18862104-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862104
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862104
    reference: chr 17
allele count: 29
allele frequency: 2.40436433581508e-4
allele num: 120614
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.183+38T>C
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.183+38T>C
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.183+38T>C
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.15+38T>C
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.15+38T>C
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.183+38T>C
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12508
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5815
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15820
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11144
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1917
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2687
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17098
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1509
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5160
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

17-18862106-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862106
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862106
    reference: chr 17
allele count: 1
allele frequency: 8.302200083022e-6
allele num: 120450
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.183+40C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.183+40C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.183+40C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.183+40C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.15+40C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.15+40C>T
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11138
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16944
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3791
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2684
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7502
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10294
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1601
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

17-18862107-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862107
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862107
    reference: chr 17
allele count: 2
allele frequency: 1.660798511924533e-5
allele num: 120424
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.183+41G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.183+41G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.183+41G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.15+41G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.15+41G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.183+41G>A
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12727
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1641
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10300
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7287
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1501
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15408
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

17-18862107-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862107
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862107
    reference: chr 17
allele count: 1
allele frequency: 8.303992559622666e-6
allele num: 120424
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.183+41G>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.15+41G>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.183+41G>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.183+41G>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.15+41G>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.183+41G>T
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11030
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4040
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15408
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1501
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7287
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

17-18862402-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862402
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862402
    reference: chr 17
allele count: 2
allele frequency: 2.013895881582922e-5
allele num: 99310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.16-46G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.184-46G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.184-46G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.184-46G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.184-46G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.16-46G>A
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11767
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16948
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9587
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5267
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7260
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7046
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8546
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4139
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

17-18862403-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862403
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862403
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 100138
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.184-45G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.184-45G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.184-45G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.184-45G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.16-45G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.16-45G>A
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16882
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8750
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7223
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1810
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1285
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4096
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8716
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10604
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-18862404-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862404
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862404
    reference: chr 17
allele count: 1
allele frequency: 1.002265119169323e-5
allele num: 99774
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.16-44C>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.184-44C>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.16-44C>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.184-44C>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.184-44C>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.184-44C>A
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13311
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16748
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8703
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11853
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7159
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4025
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3161
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6879
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11429
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3059
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

17-18862405-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862405
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862405
    reference: chr 17
allele count: 7
allele frequency: 6.975168400494241e-5
allele num: 100356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.16-43G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.184-43G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.16-43G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.184-43G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.184-43G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.184-43G>A
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10115
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16391
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15197
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6599
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9177
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7020
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13838
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3976
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3356
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2797
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

17-18862410-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862410
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862410
    reference: chr 17
allele count: 2
allele frequency: 1.964983985380519e-5
allele num: 101782
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.184-38G>C
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.184-38G>C
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.184-38G>C
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.16-38G>C
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.184-38G>C
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.16-38G>C
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13842
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5530
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8603
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21638
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6056
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3980
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9430
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1748
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ

17-18862412-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862412
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862412
    reference: chr 17
allele count: 1
allele frequency: 9.802960494069209e-6
allele num: 102010
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.184-36G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.184-36G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.16-36G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.16-36G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.184-36G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.184-36G>A
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4621
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12859
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3453
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1454
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21335
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

17-18862419-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862419
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862419
    reference: chr 17
allele count: 1
allele frequency: 9.568645462548321e-6
allele num: 104508
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.184-29G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.16-29G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.16-29G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.184-29G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.184-29G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.184-29G>A
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3626
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8398
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1789
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1584
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

17-18862420-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862420
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862420
    reference: chr 17
allele count: 1
allele frequency: 9.533615528352973e-6
allele num: 104892
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.184-28C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.16-28C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.16-28C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.184-28C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.184-28C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.184-28C>T
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7620
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7859
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4849
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2352
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8174
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

17-18862426-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862426
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862426
    reference: chr 17
allele count: 2
allele frequency: 1.857355126300148e-5
allele num: 107680
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.184-22C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.16-22C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.184-22C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.184-22C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.16-22C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.184-22C>T
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5090
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1284
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33192
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1865
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2103
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

17-18862427-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862427
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862427
    reference: chr 17
allele count: 2
allele frequency: 1.837762340574117e-5
allele num: 108828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.184-21G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.184-21G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.184-21G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.184-21G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.16-21G>A
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.16-21G>A
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4420
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5511
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6345
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2020
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

17-18862431-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862431
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862431
    reference: chr 17
allele count: 1
allele frequency: 9.044044496698923e-6
allele num: 110570
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.184-17C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.184-17C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.16-17C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.184-17C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.184-17C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.16-17C>T
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5084
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5493
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

17-18862432-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862432
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862432
    reference: chr 17
allele count: 1
allele frequency: 9.003331232556045e-6
allele num: 111070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.184-16C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.16-16C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.16-16C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.184-16C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.184-16C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.184-16C>T
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5239
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2107
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36702
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD

17-18862441-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862441
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862441
    reference: chr 17
allele count: 2
allele frequency: 1.748588015177744e-5
allele num: 114378
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.184-7C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.184-7C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.184-7C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.184-7C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.16-7C>T
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.16-7C>T
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10557
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38424
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6212
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2181
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 8.25e1
  variant carriers: 0
hgvs: c.184-7C>T
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

17-18862443-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862443
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862442
    reference: chr 17
allele count: 1
allele frequency: 8.701099819017123e-6
allele num: 114928
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.16-3delC
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.184-3delC
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.184-3delC
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.184-3delC
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.184-3delC
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.16-3delC
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3377
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40017
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
hgvs: c.184-3delC
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: TC
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

17-18862448-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862448
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862448
    reference: chr 17
allele count: 1
allele frequency: 8.602742554326319e-6
allele num: 116242
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.184A>G
  hgvsp: ENSP00000379008.2:p.Ile62Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.184A>G
  hgvsp: ENSP00000401875.2:p.Ile62Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.184A>G
  hgvsp: ENSP00000379005.2:p.Ile62Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.184A>G
  hgvsp: ENSP00000379007.3:p.Ile62Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.16A>G
  hgvsp: ENSP00000379004.1:p.Ile6Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.16A>G
  hgvsp: ENSP00000324346.6:p.Ile6Val
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2818
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6421
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile62Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

17-18862456-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862456
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862456
    reference: chr 17
allele count: 4
allele frequency: 3.407387215483168e-5
allele num: 117392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.24C>T
  hgvsp: ENST00000317977.6:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.192C>T
  hgvsp: ENST00000417251.2:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.192C>T
  hgvsp: ENST00000395647.2:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.192C>T
  hgvsp: ENST00000395645.3:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.24C>T
  hgvsp: ENST00000395642.1:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.192C>T
  hgvsp: ENST00000395643.2:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39357
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6596
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2292
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala64Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

17-18862459-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862459
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862459
    reference: chr 17
allele count: 1
allele frequency: 8.49285750683675e-6
allele num: 117746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.195C>T
  hgvsp: ENST00000395645.3:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.195C>T
  hgvsp: ENST00000395647.2:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.195C>T
  hgvsp: ENST00000395643.2:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.27C>T
  hgvsp: ENST00000317977.6:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.195C>T
  hgvsp: ENST00000417251.2:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.27C>T
  hgvsp: ENST00000395642.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41713
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2122
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser65Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS

17-18862460-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862460
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862460
    reference: chr 17
allele count: 9
allele frequency: 7.637344919468441e-5
allele num: 117842
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.196C>T
  hgvsp: ENSP00000401875.2:p.Leu66Phe
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.196C>T
  hgvsp: ENSP00000379008.2:p.Leu66Phe
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.28C>T
  hgvsp: ENSP00000324346.6:p.Leu10Phe
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.196C>T
  hgvsp: ENSP00000379007.3:p.Leu66Phe
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.196C>T
  hgvsp: ENSP00000379005.2:p.Leu66Phe
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.28C>T
  hgvsp: ENSP00000379004.1:p.Leu10Phe
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11774
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2311
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6648
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1896
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu66Phe
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS

17-18862463-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862463
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862463
    reference: chr 17
allele count: 1
allele frequency: 8.466683600033867e-6
allele num: 118110
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.199T>C
  hgvsp: ENSP00000379007.3:p.Phe67Leu
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.199T>C
  hgvsp: ENSP00000379008.2:p.Phe67Leu
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.199T>C
  hgvsp: ENSP00000379005.2:p.Phe67Leu
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.31T>C
  hgvsp: ENSP00000379004.1:p.Phe11Leu
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.199T>C
  hgvsp: ENSP00000401875.2:p.Phe67Leu
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.31T>C
  hgvsp: ENSP00000324346.6:p.Phe11Leu
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41857
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2316
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1974
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Phe67Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

17-18862465-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862465
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862465
    reference: chr 17
allele count: 4
allele frequency: 3.384266544833071e-5
allele num: 118194
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.201C>T
  hgvsp: ENST00000395643.2:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.201C>T
  hgvsp: ENST00000395645.3:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.201C>T
  hgvsp: ENST00000417251.2:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.33C>T
  hgvsp: ENST00000395642.1:c.33C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.201C>T
  hgvsp: ENST00000395647.2:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.33C>T
  hgvsp: ENST00000317977.6:c.33C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11892
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2316
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1931
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe67Phe
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP

17-18862466-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862466
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862466
    reference: chr 17
allele count: 36
allele frequency: 3.042339220823122e-4
allele num: 118330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.34G>A
  hgvsp: ENSP00000324346.6:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.202G>A
  hgvsp: ENSP00000379008.2:p.Ala68Thr
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.34G>A
  hgvsp: ENSP00000379004.1:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.202G>A
  hgvsp: ENSP00000401875.2:p.Ala68Thr
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.202G>A
  hgvsp: ENSP00000379007.3:p.Ala68Thr
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.202G>A
  hgvsp: ENSP00000379005.2:p.Ala68Thr
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11933
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39550
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6715
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41943
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1877
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 9.25e1
  variant carriers: 1
hgvs: p.Ala68Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

17-18862466-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862466
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862466
    reference: chr 17
allele count: 1
allele frequency: 8.450942280064228e-6
allele num: 118330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.34G>T
  hgvsp: ENSP00000324346.6:p.Ala12Ser
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.202G>T
  hgvsp: ENSP00000379008.2:p.Ala68Ser
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.34G>T
  hgvsp: ENSP00000379004.1:p.Ala12Ser
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.202G>T
  hgvsp: ENSP00000379007.3:p.Ala68Ser
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.202G>T
  hgvsp: ENSP00000401875.2:p.Ala68Ser
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.202G>T
  hgvsp: ENSP00000379005.2:p.Ala68Ser
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2313
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1925
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41943
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala68Ser
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

17-18862474-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862474
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862474
    reference: chr 17
allele count: 1
allele frequency: 8.414533582403528e-6
allele num: 118842
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.210C>T
  hgvsp: ENST00000395645.3:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.210C>T
  hgvsp: ENST00000395647.2:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.42C>T
  hgvsp: ENST00000317977.6:c.42C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.210C>T
  hgvsp: ENST00000395643.2:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.42C>T
  hgvsp: ENST00000395642.1:c.42C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.210C>T
  hgvsp: ENST00000417251.2:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12091
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser70Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

17-18862479-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862479
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862479
    reference: chr 17
allele count: 1
allele frequency: 8.398844319021702e-6
allele num: 119064
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.215G>A
  hgvsp: ENSP00000379008.2:p.Gly72Asp
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.47G>A
  hgvsp: ENSP00000379004.1:p.Gly16Asp
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.47G>A
  hgvsp: ENSP00000324346.6:p.Gly16Asp
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.215G>A
  hgvsp: ENSP00000401875.2:p.Gly72Asp
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.215G>A
  hgvsp: ENSP00000379007.3:p.Gly72Asp
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.215G>A
  hgvsp: ENSP00000379005.2:p.Gly72Asp
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1587
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2358
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2191
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42343
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly72Asp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

17-18862487-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862487
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862487
    reference: chr 17
allele count: 1
allele frequency: 8.383635144198524e-6
allele num: 119280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.223C>T
  hgvsp: ENSP00000379005.2:p.Leu75Phe
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.55C>T
  hgvsp: ENSP00000324346.6:p.Leu19Phe
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.223C>T
  hgvsp: ENSP00000379008.2:p.Leu75Phe
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.223C>T
  hgvsp: ENSP00000379007.3:p.Leu75Phe
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.55C>T
  hgvsp: ENSP00000379004.1:p.Leu19Phe
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.223C>T
  hgvsp: ENSP00000401875.2:p.Leu75Phe
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu75Phe
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum

17-18862494-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862494
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862494
    reference: chr 17
allele count: 1
allele frequency: 8.384759860477596e-6
allele num: 119264
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.230T>C
  hgvsp: ENSP00000401875.2:p.Ile77Thr
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.230T>C
  hgvsp: ENSP00000379005.2:p.Ile77Thr
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.230T>C
  hgvsp: ENSP00000379007.3:p.Ile77Thr
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.230T>C
  hgvsp: ENSP00000379008.2:p.Ile77Thr
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.62T>C
  hgvsp: ENSP00000324346.6:p.Ile21Thr
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.62T>C
  hgvsp: ENSP00000379004.1:p.Ile21Thr
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1906
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile77Thr
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

17-18862503-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862503
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862503
    reference: chr 17
allele count: 6
allele frequency: 5.07700118463361e-5
allele num: 118180
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.239C>T
  hgvsp: ENSP00000379007.3:p.Ala80Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.71C>T
  hgvsp: ENSP00000379004.1:p.Ala24Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.239C>T
  hgvsp: ENSP00000401875.2:p.Ala80Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.71C>T
  hgvsp: ENSP00000324346.6:p.Ala24Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.239C>T
  hgvsp: ENSP00000379005.2:p.Ala80Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.239C>T
  hgvsp: ENSP00000379008.2:p.Ala80Val
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12275
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6233
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala80Val
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

17-18862504-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862504
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862504
    reference: chr 17
allele count: 12
allele frequency: 1.013890297069857e-4
allele num: 118356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.240G>A
  hgvsp: ENST00000417251.2:c.240G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.240G>A
  hgvsp: ENST00000395643.2:c.240G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.240G>A
  hgvsp: ENST00000395645.3:c.240G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.72G>A
  hgvsp: ENST00000395642.1:c.72G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.72G>A
  hgvsp: ENST00000317977.6:c.72G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.240G>A
  hgvsp: ENST00000395647.2:c.240G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36660
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12496
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40119
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6280
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2169
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala80Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP

17-18862510-AGGCGC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862510
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862505
    reference: chr 17
allele count: 1
allele frequency: 8.457374830852504e-6
allele num: 118240
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.250_254delGCGGC
  hgvsp: ENSP00000379007.3:p.Ala84ArgfsTer37
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.250_254delGCGGC
  hgvsp: ENSP00000379008.2:p.Ala84ArgfsTer37
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.82_86delGCGGC
  hgvsp: ENSP00000379004.1:p.Ala28ArgfsTer37
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.82_86delGCGGC
  hgvsp: ENSP00000324346.6:p.Ala28ArgfsTer37
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.250_254delGCGGC
  hgvsp: ENSP00000379005.2:p.Ala84ArgfsTer37
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.250_254delGCGGC
  hgvsp: ENSP00000401875.2:p.Ala84ArgfsTer37
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1990
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6328
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala84ArgfsTer37
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: AGGCGC
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/17-18862513-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862513
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862513
    reference: chr 17
allele count: 1
allele frequency: 8.43497477942541e-6
allele num: 118554
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.249C>A
  hgvsp: ENST00000395643.2:c.249C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.249C>A
  hgvsp: ENST00000417251.2:c.249C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.81C>A
  hgvsp: ENST00000395642.1:c.81C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.249C>A
  hgvsp: ENST00000395645.3:c.249C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.81C>A
  hgvsp: ENST00000317977.6:c.81C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.249C>A
  hgvsp: ENST00000395647.2:c.249C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6413
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40265
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly83Gly
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

17-18862513-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862513
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862513
    reference: chr 17
allele count: 7
allele frequency: 5.904482345597787e-5
allele num: 118554
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.249C>T
  hgvsp: ENST00000417251.2:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.249C>T
  hgvsp: ENST00000395645.3:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.81C>T
  hgvsp: ENST00000317977.6:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.81C>T
  hgvsp: ENST00000395642.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.249C>T
  hgvsp: ENST00000395643.2:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.249C>T
  hgvsp: ENST00000395647.2:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36535
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4056
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2231
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly83Gly
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

17-18862514-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862514
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862514
    reference: chr 17
allele count: 8
allele frequency: 6.738998584810297e-5
allele num: 118712
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.250G>A
  hgvsp: ENSP00000379008.2:p.Ala84Thr
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.250G>A
  hgvsp: ENSP00000379005.2:p.Ala84Thr
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.250G>A
  hgvsp: ENSP00000401875.2:p.Ala84Thr
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.82G>A
  hgvsp: ENSP00000379004.1:p.Ala28Thr
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.82G>A
  hgvsp: ENSP00000324346.6:p.Ala28Thr
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.250G>A
  hgvsp: ENSP00000379007.3:p.Ala84Thr
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13021
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36570
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2001
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6488
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala84Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP

19-9452990-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9452990
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9452990
    reference: chr 19
allele count: 1
allele frequency: 8.560617734175697e-6
allele num: 116814
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+12125T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+17534T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.243+1130T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.*686T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.243+1130T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.821T>C
  hgvsp: ENSP00000474719.1:p.Ile274Thr
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.*686T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+17534T>C
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-391+3732T>C
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466745
  ensembl transcript: ENST00000591652
  gene symbol: ZNF559
  hgvsc: ENST00000591652.1:c.148-987T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*99+1130T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+17534T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-391+3732T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.863T>C
  hgvsp: ENSP00000377461.1:p.Ile288Thr
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-392+17534T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.863T>C
  hgvsp: ENSP00000474760.1:p.Ile288Thr
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+17534T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.1055T>C
  hgvsp: ENSP00000468153.2:p.Ile352Thr
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+17534T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.512+1130T>C
  variant of: http://identifiers.org/hgnc/42964
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ile288Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

17-18862515-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862515
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862515
    reference: chr 17
allele count: 1
allele frequency: 8.424599831508003e-6
allele num: 118700
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.251C>G
  hgvsp: ENSP00000379007.3:p.Ala84Gly
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.83C>G
  hgvsp: ENSP00000324346.6:p.Ala28Gly
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.251C>G
  hgvsp: ENSP00000401875.2:p.Ala84Gly
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.251C>G
  hgvsp: ENSP00000379005.2:p.Ala84Gly
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.251C>G
  hgvsp: ENSP00000379008.2:p.Ala84Gly
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.83C>G
  hgvsp: ENSP00000379004.1:p.Ala28Gly
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4059
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2253
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40457
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6489
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala84Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-18862515-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862515
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862515
    reference: chr 17
allele count: 2
allele frequency: 1.684919966301601e-5
allele num: 118700
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.251C>T
  hgvsp: ENSP00000401875.2:p.Ala84Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.251C>T
  hgvsp: ENSP00000379008.2:p.Ala84Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.83C>T
  hgvsp: ENSP00000324346.6:p.Ala28Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.83C>T
  hgvsp: ENSP00000379004.1:p.Ala28Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.251C>T
  hgvsp: ENSP00000379007.3:p.Ala84Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.251C>T
  hgvsp: ENSP00000379005.2:p.Ala84Val
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2253
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6489
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2090
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala84Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

17-18862516-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862516
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862516
    reference: chr 17
allele count: 2
allele frequency: 1.684437482102852e-5
allele num: 118734
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.252G>A
  hgvsp: ENST00000395645.3:c.252G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.252G>A
  hgvsp: ENST00000417251.2:c.252G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.84G>A
  hgvsp: ENST00000395642.1:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.252G>A
  hgvsp: ENST00000395643.2:c.252G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.84G>A
  hgvsp: ENST00000317977.6:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.252G>A
  hgvsp: ENST00000395647.2:c.252G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6510
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40626
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala84Ala
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS

17-18862527-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862527
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862526
    reference: chr 17
allele count: 2
allele frequency: 1.684692880487887e-5
allele num: 118716
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.265delG
  hgvsp: ENSP00000401875.2:p.Ala89ProfsTer104
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.97delG
  hgvsp: ENSP00000324346.6:p.Ala33ProfsTer151
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.265delG
  hgvsp: ENSP00000379008.2:p.Ala89ProfsTer104
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.97delG
  hgvsp: ENSP00000379004.1:p.Ala33ProfsTer151
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.265delG
  hgvsp: ENSP00000379005.2:p.Ala89ProfsTer151
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.265delG
  hgvsp: ENSP00000379007.3:p.Ala89ProfsTer104
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4113
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6533
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41049
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2076
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala89ProfsTer104
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: TG
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

17-18862531-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862531
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862531
    reference: chr 17
allele count: 16
allele frequency: 1.346642651539381e-4
allele num: 118814
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.267C>T
  hgvsp: ENST00000395647.2:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.99C>T
  hgvsp: ENST00000317977.6:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.267C>T
  hgvsp: ENST00000417251.2:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.267C>T
  hgvsp: ENST00000395645.3:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.99C>T
  hgvsp: ENST00000395642.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.267C>T
  hgvsp: ENST00000395643.2:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13388
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41166
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2104
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala89Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD

17-18862536-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862536
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862536
    reference: chr 17
allele count: 15
allele frequency: 1.266421262368714e-4
allele num: 118444
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.272C>T
  hgvsp: ENSP00000379008.2:p.Ala91Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.104C>T
  hgvsp: ENSP00000379004.1:p.Ala35Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.104C>T
  hgvsp: ENSP00000324346.6:p.Ala35Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.272C>T
  hgvsp: ENSP00000401875.2:p.Ala91Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.272C>T
  hgvsp: ENSP00000379007.3:p.Ala91Val
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.272C>T
  hgvsp: ENSP00000379005.2:p.Ala91Val
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4173
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13414
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2020
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40812
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala91Val
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/17-18862543-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862543
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862543
    reference: chr 17
allele count: 1
allele frequency: 8.434405627435435e-6
allele num: 118562
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.111C>A
  hgvsp: ENSP00000324346.6:p.Phe37Leu
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.279C>A
  hgvsp: ENSP00000379005.2:p.Phe93Leu
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.279C>A
  hgvsp: ENSP00000379007.3:p.Phe93Leu
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.279C>A
  hgvsp: ENSP00000401875.2:p.Phe93Leu
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.279C>A
  hgvsp: ENSP00000379008.2:p.Phe93Leu
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.111C>A
  hgvsp: ENSP00000379004.1:p.Phe37Leu
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2262
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Phe93Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

17-18862543-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862543
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862543
    reference: chr 17
allele count: 137
allele frequency: 1.155513570958655e-3
allele num: 118562
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.111C>T
  hgvsp: ENST00000395642.1:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.279C>T
  hgvsp: ENST00000417251.2:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.111C>T
  hgvsp: ENST00000317977.6:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.279C>T
  hgvsp: ENST00000395643.2:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.279C>T
  hgvsp: ENST00000395645.3:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.279C>T
  hgvsp: ENST00000395647.2:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36488
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13319
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 3.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2142
  bin: 9.75e1
  variant carriers: 135
genotype quality: GenotypeQuality
  all individuals: 40907
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Phe93Phe
num of homozygotes: 1
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

17-18862544-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862544
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862544
    reference: chr 17
allele count: 1
allele frequency: 8.437679300685139e-6
allele num: 118516
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.112G>A
  hgvsp: ENSP00000324346.6:p.Glu38Lys
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.280G>A
  hgvsp: ENSP00000379005.2:p.Glu94Lys
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.280G>A
  hgvsp: ENSP00000401875.2:p.Glu94Lys
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.280G>A
  hgvsp: ENSP00000379008.2:p.Glu94Lys
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.280G>A
  hgvsp: ENSP00000379007.3:p.Glu94Lys
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.112G>A
  hgvsp: ENSP00000379004.1:p.Glu38Lys
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2264
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2274
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu94Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

17-18862546-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862546
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862546
    reference: chr 17
allele count: 1
allele frequency: 8.433836552247617e-6
allele num: 118570
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.114G>A
  hgvsp: ENST00000317977.6:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.282G>A
  hgvsp: ENST00000395645.3:c.282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.114G>A
  hgvsp: ENST00000395642.1:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.282G>A
  hgvsp: ENST00000395647.2:c.282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.282G>A
  hgvsp: ENST00000395643.2:c.282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.282G>A
  hgvsp: ENST00000417251.2:c.282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6569
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2331
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41019
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2288
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu94Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ

17-18862548-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862548
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862548
    reference: chr 17
allele count: 1
allele frequency: 8.43810648890389e-6
allele num: 118510
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.284G>A
  hgvsp: ENSP00000379005.2:p.Trp95Ter
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.284G>A
  hgvsp: ENSP00000379007.3:p.Trp95Ter
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.116G>A
  hgvsp: ENSP00000379004.1:p.Trp39Ter
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.284G>A
  hgvsp: ENSP00000401875.2:p.Trp95Ter
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379008
  ensembl transcript: ENST00000395647
  gene symbol: SLC5A10
  hgvsc: ENST00000395647.2:c.284G>A
  hgvsp: ENSP00000379008.2:p.Trp95Ter
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.116G>A
  hgvsp: ENSP00000324346.6:p.Trp39Ter
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2024
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6546
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Trp95Ter
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

17-18862551-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18862551
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 18862551
    reference: chr 17
allele count: 331
allele frequency: 2.795088750401108e-3
allele num: 118422
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000401875
  ensembl transcript: ENST00000417251
  gene symbol: SLC5A10
  hgvsc: ENST00000417251.2:c.287A>T
  hgvsp: ENSP00000401875.2:p.Asn96Ile
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379005
  ensembl transcript: ENST00000395643
  gene symbol: SLC5A10
  hgvsc: ENST00000395643.2:c.287A>T
  hgvsp: ENSP00000379005.2:p.Asn96Ile
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379004
  ensembl transcript: ENST00000395642
  gene symbol: SLC5A10
  hgvsc: ENST00000395642.1:c.119A>T
  hgvsp: ENSP00000379004.1:p.Asn40Ile
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000379007
  ensembl transcript: ENST00000395645
  gene symbol: SLC5A10
  hgvsc: ENST00000395645.3:c.287A>T
  hgvsp: ENSP00000379007.3:p.Asn96Ile
  variant of: http://identifiers.org/hgnc/23155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000154025
  ensembl protein: ENSP00000324346
  ensembl transcript: ENST00000317977
  gene symbol: SLC5A10
  hgvsc: ENST00000317977.6:c.119A>T
  hgvsp: ENSP00000324346.6:p.Asn40Ile
  variant of: http://identifiers.org/hgnc/23155
canonical: true
consequence: missense
filter: PASS
hgvs: p.Asn96Ile
num of homozygotes: 4
reference allele: A

GenotypeQuality
all individuals: 4094
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8458
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2706
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3999
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.899999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.582e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.496e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 4.57e0

DP
type: SiteQuality
SIO_000300: 1.920392e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8455
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2706
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1934
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5008254539997e-5
allele num: 66630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.017e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.74e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.61e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

FS
type: SiteQuality
SIO_000300: 3.658e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.920401e6

QD
type: SiteQuality
SIO_000300: 1.03e1

GenotypeQuality
all individuals: 3995
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4094
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5297
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2705
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.004022695205788e-5
allele num: 66622
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.32152117545376e-4
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.007e1

MQRankSum
type: SiteQuality
SIO_000300: 3.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.342e0

VQSLOD
type: SiteQuality
SIO_000300: 2.11e0

DP
type: SiteQuality
SIO_000300: 1.920611e6

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2704
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5294
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4093
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3997
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501095799933952e-5
allele num: 66618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.919926e6

FS
type: SiteQuality
SIO_000300: 8.28e-1

QD
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQRankSum
type: SiteQuality
SIO_000300: -1.894e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

VQSLOD
type: SiteQuality
SIO_000300: -6.307e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.58e-1

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4092
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2704
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10313
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5290
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.91955e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.195e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

QD
type: SiteQuality
SIO_000300: 5.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.143e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.73e-1

FS
type: SiteQuality
SIO_000300: 6.207e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2704
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8430
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003273568189326e-5
allele num: 66594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

DP
type: SiteQuality
SIO_000300: 1.91863e6

FS
type: SiteQuality
SIO_000300: 1.053e0

VQSLOD
type: SiteQuality
SIO_000300: 6.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.082e1

MQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.59e-1

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2704
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5288
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3997
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1934
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variant carriers: 0

GenotypeQuality
all individuals: 23259
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50177209106746e-5
allele num: 66588
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.820167455405897e-4
allele num: 16482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.219e1

FS
type: SiteQuality
SIO_000300: 1.214e0

MQRankSum
type: SiteQuality
SIO_000300: 2.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.51e-1

DP
type: SiteQuality
SIO_000300: 1.918104e6

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.589e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.74e-1

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2702
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4092
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 297
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 40
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variant carriers: 0

GenotypeQuality
all individuals: 1934
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502358703163967e-5
allele num: 66562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-1

FS
type: SiteQuality
SIO_000300: 7.085e0

QD
type: SiteQuality
SIO_000300: 1.505e1

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

DP
type: SiteQuality
SIO_000300: 1.916376e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.09e-1

GenotypeQuality
all individuals: 123
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2700
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502448991856726e-5
allele num: 66558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.922e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.69e-1

FS
type: SiteQuality
SIO_000300: 1.845e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

DP
type: SiteQuality
SIO_000300: 1.916416e6

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
SIO_000300: 8.42e0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 23189
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66558
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.215509906405737e-4
allele num: 16454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.32e-1

FS
type: SiteQuality
SIO_000300: 1.845e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.942e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

DP
type: SiteQuality
SIO_000300: 1.916416e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.922e0

QD
type: SiteQuality
SIO_000300: 8.42e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10324
bin: 9.75e1
variant carriers: 18

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4087
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variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

Latino
type: Population
allele count: 18
allele frequency: 1.557362865547673e-3
allele num: 11558
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6580
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.161e1

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.580000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.316e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 1.915498e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4085
bin: 8.25e1
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GenotypeQuality
all individuals: 3971
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00507858280494e-5
allele num: 66554
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.914005e6

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.87e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

QD
type: SiteQuality
SIO_000300: 1.248e1

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 22923
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GenotypeQuality
all individuals: 110
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.082725060827251e-5
allele num: 16440
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66546
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.49e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.463e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.02e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

DP
type: SiteQuality
SIO_000300: 1.913148e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 1.0644e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.863e0

VQSLOD
type: SiteQuality
SIO_000300: -1.001e0

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e-1

QD
type: SiteQuality
SIO_000300: 1.005e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.39e-1

DP
type: SiteQuality
SIO_000300: 1.911759e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 5260
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.023e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.088e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.910914e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 22420
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.0960741282614e-5
allele num: 16404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 1.908324e6

QD
type: SiteQuality
SIO_000300: 9.58e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-2

FS
type: SiteQuality
SIO_000300: 5.449e0

VQSLOD
type: SiteQuality
SIO_000300: -5.153e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.13e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 4086
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variant carriers: 0

GenotypeQuality
all individuals: 5244
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.007880647295915e-5
allele num: 66492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.368e0

MQRankSum
type: SiteQuality
SIO_000300: 5.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.024e-1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.342e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 8.28e-1

DP
type: SiteQuality
SIO_000300: 1.905655e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 11
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variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73190162798753e-4
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.35e-1

FS
type: SiteQuality
SIO_000300: 1.609e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
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DP
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 192
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.011413256241154e-5
allele num: 66414
num of homozygotes: 0

East Asian
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allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -8.86e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 2.124e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

MQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

DP
type: SiteQuality
SIO_000300: 1.891594e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.035e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.41e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Other
type: Population
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East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506341698550899e-5
allele num: 66386
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.65e-1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.57e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 7.446e0

DP
type: SiteQuality
SIO_000300: 1.889549e6

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 310
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GenotypeQuality
all individuals: 5181
bin: 7.75e1
variant carriers: 1

Other
type: Population
allele count: 5
allele frequency: 5.567928730512249e-3
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.524390243902439e-4
allele num: 6560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
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allele count: 215
allele frequency: 3.238439524024703e-3
allele num: 66390
num of homozygotes: 3

Latino
type: Population
allele count: 32
allele frequency: 2.772483105181078e-3
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.927525057825752e-4
allele num: 10376
num of homozygotes: 0

South Asian
type: Population
allele count: 21
allele frequency: 1.286291804483646e-3
allele num: 16326
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.89224e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.33e0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.83e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.168e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 379
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GenotypeQuality
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GenotypeQuality
all individuals: 2674
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GenotypeQuality
all individuals: 10507
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506250941406838e-5
allele num: 66390
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.89224e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.83e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.69e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.168e0

MQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

QD
type: SiteQuality
SIO_000300: 1.439e1

VQSLOD
type: SiteQuality
SIO_000300: 5.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-2

GenotypeQuality
all individuals: 5182
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2688
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19184
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7749
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.637625289128758e-5
allele num: 10376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66368
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.883224e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.271e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.28e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.859999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.2e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.97e-1

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10299
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4056
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507068149621726e-5
allele num: 66354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.597e1

MQ
type: SiteQuality
SIO_000300: 5.868e1

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

FS
type: SiteQuality
SIO_000300: 1.941e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.689e0

VQSLOD
type: SiteQuality
SIO_000300: -1.938e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.879127e6

GenotypeQuality
all individuals: 1130
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10325
bin: 9.75e1
variant carriers: 29

GenotypeQuality
all individuals: 1050
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4047
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.312673450508788e-4
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 27
allele frequency: 2.341311134235172e-3
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16288
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.85e0

VQSLOD
type: SiteQuality
SIO_000300: 4.88e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.19e-1

DP
type: SiteQuality
SIO_000300: 1.866912e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.34e-1

QD
type: SiteQuality
SIO_000300: 1.505e1

GenotypeQuality
all individuals: 1427
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1915
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5120
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4038
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.164468006411046e-5
allele num: 16222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.092e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.422e0

FS
type: SiteQuality
SIO_000300: 8.487e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.78e-1

DP
type: SiteQuality
SIO_000300: 1.865397e6

GenotypeQuality
all individuals: 4040
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3767
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1134
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1914
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2683
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.1667488899852e-5
allele num: 16216
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.656237929702588e-5
allele num: 10356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

QD
type: SiteQuality
SIO_000300: 1.103e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 2.292e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.755e0

DP
type: SiteQuality
SIO_000300: 1.859957e6

GenotypeQuality
all individuals: 1641
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10300
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3767
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1914
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2683
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66244
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

FS
type: SiteQuality
SIO_000300: 2.292e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.755e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.103e1

DP
type: SiteQuality
SIO_000300: 1.859957e6

GenotypeQuality
all individuals: 2930
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2403
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1465
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3373
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.622794623772778e-5
allele num: 55206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13066
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.043182e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.113e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

VQSLOD
type: SiteQuality
SIO_000300: 2.8e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3283
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7342
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.95e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

DP
type: SiteQuality
SIO_000300: 1.048598e6

VQSLOD
type: SiteQuality
SIO_000300: 8.85e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 1

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4619
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 745
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variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5134
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.665184730952016e-5
allele num: 13046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9664
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.05634e6

VQSLOD
type: SiteQuality
SIO_000300: 3.88e-1

QD
type: SiteQuality
SIO_000300: 1.086e1

MQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.775e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1173
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
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GenotypeQuality
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GenotypeQuality
all individuals: 3793
bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 779
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variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 9.75e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.962500896250089e-5
allele num: 55788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5172
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.514921981517952e-4
allele num: 13202
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.071745e6

VQSLOD
type: SiteQuality
SIO_000300: 3.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.83e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 1.1e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

GenotypeQuality
all individuals: 409
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3600
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4810
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20180
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1353
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.537193590605214e-5
allele num: 56542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

QD
type: SiteQuality
SIO_000300: 1.132e1

MQRankSum
type: SiteQuality
SIO_000300: 1.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.23e-1

FS
type: SiteQuality
SIO_000300: 3.017e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.29e-1

DP
type: SiteQuality
SIO_000300: 1.131013e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5634
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4287
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1836
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4090
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9256
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.763357432551578e-5
allele num: 56710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.592e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.204e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.53e-1

FS
type: SiteQuality
SIO_000300: 3.324e0

DP
type: SiteQuality
SIO_000300: 1.15007e6

MQRankSum
type: SiteQuality
SIO_000300: -3.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.24e-1

GenotypeQuality
all individuals: 726
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4750
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28415
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2500
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.721822376803609e-5
allele num: 58078
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8764
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.857e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.278e0

MQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.235055e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.482e0

QD
type: SiteQuality
SIO_000300: 4.36e0

GenotypeQuality
all individuals: 1090
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29057
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1620
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3386
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1830
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.71503052754339e-5
allele num: 58308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13820
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8786
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.901e0

VQSLOD
type: SiteQuality
SIO_000300: 2.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.749e0

MQRankSum
type: SiteQuality
SIO_000300: 5.38e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.076e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

QD
type: SiteQuality
SIO_000300: 8.92e0

DP
type: SiteQuality
SIO_000300: 1.246384e6

GenotypeQuality
all individuals: 6804
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1964
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5303
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1166
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.21483942414175e-4
allele num: 9030
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

DP
type: SiteQuality
SIO_000300: 1.308987e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.011e0

FS
type: SiteQuality
SIO_000300: 1.653e0

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

QD
type: SiteQuality
SIO_000300: 1.368e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.63e-1

GenotypeQuality
all individuals: 34625
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1798
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variant carriers: 0

GenotypeQuality
all individuals: 486
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variant carriers: 0

GenotypeQuality
all individuals: 1194
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variant carriers: 0

GenotypeQuality
all individuals: 1784
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.190100744634253e-4
allele num: 9132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7956
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14360
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.291e0

QD
type: SiteQuality
SIO_000300: 1.483e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

MQRankSum
type: SiteQuality
SIO_000300: -4.45e-1

DP
type: SiteQuality
SIO_000300: 1.325797e6

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
all individuals: 1862
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36306
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2086
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1173
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
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variant carriers: 0

GenotypeQuality
all individuals: 5718
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.627869119322807e-5
allele num: 61430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

QD
type: SiteQuality
SIO_000300: 1.768e1

DP
type: SiteQuality
SIO_000300: 1.352446e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.756e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.1e-2

GenotypeQuality
all individuals: 5778
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
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GenotypeQuality
all individuals: 1223
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1892
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1877
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8210
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5620
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.818491749624983e-5
allele num: 14666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

MQ
type: SiteQuality
SIO_000300: 5.875e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.992e0

DP
type: SiteQuality
SIO_000300: 1.359712e6

QD
type: SiteQuality
SIO_000300: 2.47e0

GenotypeQuality
all individuals: 145
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1885
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2006
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.222493887530562e-3
allele num: 818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63190
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5798
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.495193556767992e-5
allele num: 15396
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.15e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.71e-1

QD
type: SiteQuality
SIO_000300: 9.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.75e-1

DP
type: SiteQuality
SIO_000300: 1.404963e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
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variant carriers: 0

GenotypeQuality
all individuals: 73
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variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
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variant carriers: 0

GenotypeQuality
all individuals: 1886
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.576044129235618e-5
allele num: 63450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9632
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 9.249000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.792e0

QD
type: SiteQuality
SIO_000300: 9.9e0

MQRankSum
type: SiteQuality
SIO_000300: 2.03e0

DP
type: SiteQuality
SIO_000300: 1.41212e6

VQSLOD
type: SiteQuality
SIO_000300: 3.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.84e-1

GenotypeQuality
all individuals: 1303
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
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GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
all individuals: 2249
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variant carriers: 0

GenotypeQuality
all individuals: 2072
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1885
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variant carriers: 1

GenotypeQuality
all individuals: 183
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GenotypeQuality
all individuals: 40943
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5918
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.30596544330937e-5
allele num: 15858
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.866e0

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.428075e6

FS
type: SiteQuality
SIO_000300: 2.27e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-1

QD
type: SiteQuality
SIO_000300: 1.382e1

VQSLOD
type: SiteQuality
SIO_000300: -1.281e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546838262591263e-5
allele num: 64648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.048160942897785e-4
allele num: 9842
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6022
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16084
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

DP
type: SiteQuality
SIO_000300: 1.443295e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 9.747e0

QD
type: SiteQuality
SIO_000300: 1.494e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.16e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6080
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.19348445435402e-5
allele num: 16146
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.65e-1

DP
type: SiteQuality
SIO_000300: 1.447799e6

MQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.995e0

QD
type: SiteQuality
SIO_000300: 1.196e1

MQ
type: SiteQuality
SIO_000300: 5.945e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

FS
type: SiteQuality
SIO_000300: 6.691e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16168
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.04675505931612e-3
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.21e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.07e-1

DP
type: SiteQuality
SIO_000300: 1.449842e6

FS
type: SiteQuality
SIO_000300: 7.19e-1

GenotypeQuality
all individuals: 148
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6112
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9914
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.159911297277319e-5
allele num: 16234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.866e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e-1

QD
type: SiteQuality
SIO_000300: 1.477e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

FS
type: SiteQuality
SIO_000300: 5.282e0

VQSLOD
type: SiteQuality
SIO_000300: -1.484e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.451963e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.007861318282604e-4
allele num: 9922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.6165209897821e-5
allele num: 64984
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.188e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

FS
type: SiteQuality
SIO_000300: 3.874e0

QD
type: SiteQuality
SIO_000300: 1.1e1

DP
type: SiteQuality
SIO_000300: 1.453707e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9944
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 33
allele frequency: 5.37109375e-3
allele num: 6144
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.149425287356322e-3
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.074558032282859e-5
allele num: 65050
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.08e-1

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16280
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6144
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African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.53727901614143e-5
allele num: 65050
num of homozygotes: 0

VQSLOD
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SIO_000300: 4.29e0

InbreedingCoeff
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FS
type: SiteQuality
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QD
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MQ
type: SiteQuality
SIO_000300: 5.933e1

ClippingRankSum
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DP
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.531815814466469e-5
allele num: 65282
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.312e0

InbreedingCoeff
type: SiteQuality
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MQRankSum
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MQ
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BaseQRankSum
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QD
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FS
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VQSLOD
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8624
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African
type: Population
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Latino
type: Population
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Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.529940944279551e-5
allele num: 65362
num of homozygotes: 0

South Asian
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
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ClippingRankSum
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FS
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DP
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BaseQRankSum
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.38e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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East Asian
type: Population
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allele frequency: 0.0e0
allele num: 8624
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527370478983382e-5
allele num: 65472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.383e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.445e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
SIO_000300: 1.544e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.793e0

MQ
type: SiteQuality
SIO_000300: 5.871e1

DP
type: SiteQuality
SIO_000300: 1.468027e6

MQRankSum
type: SiteQuality
SIO_000300: -7.19e-1

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6892
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42220
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2397
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9994
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527650473571647e-5
allele num: 65460
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

DP
type: SiteQuality
SIO_000300: 1.467277e6

VQSLOD
type: SiteQuality
SIO_000300: -1.808e0

FS
type: SiteQuality
SIO_000300: 2.457e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.15e-1

MQ
type: SiteQuality
SIO_000300: 5.871e1

QD
type: SiteQuality
SIO_000300: 1.797e1

GenotypeQuality
all individuals: 1984
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2167
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39465
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 9.75e1
variant carriers: 6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.750393838613688e-4
allele num: 11426
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.221150323604836e-4
allele num: 16378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.082804118626302e-5
allele num: 64876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.213e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 1.494527e6

VQSLOD
type: SiteQuality
SIO_000300: -1.512e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.74e0

QD
type: SiteQuality
SIO_000300: 1.266e1

MQ
type: SiteQuality
SIO_000300: 5.891e1

GenotypeQuality
all individuals: 314
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2009
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1268
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1879
bin: 9.75e1
variant carriers: 12

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.103515625e-5
allele num: 16384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.539171925504079e-4
allele num: 64970
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.579778830963665e-4
allele num: 6330
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.663e0

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

MQ
type: SiteQuality
SIO_000300: 5.94e1

FS
type: SiteQuality
SIO_000300: 2.451e0

QD
type: SiteQuality
SIO_000300: 1.285e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

DP
type: SiteQuality
SIO_000300: 1.485488e6

GenotypeQuality
all individuals: 2054
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2015
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39794
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2213
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64976
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.101281269066504e-5
allele num: 16390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9824
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 1.3312e1

QD
type: SiteQuality
SIO_000300: 1.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.301e0

DP
type: SiteQuality
SIO_000300: 1.462805e6

VQSLOD
type: SiteQuality
SIO_000300: -2.742e0

MQ
type: SiteQuality
SIO_000300: 5.751e1

GenotypeQuality
all individuals: 602
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 241
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2231
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2088
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537420822827624e-5
allele num: 65044
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e0

FS
type: SiteQuality
SIO_000300: 2.1238e1

MQ
type: SiteQuality
SIO_000300: 5.956e1

VQSLOD
type: SiteQuality
SIO_000300: -2.287e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

QD
type: SiteQuality
SIO_000300: 1.084e1

DP
type: SiteQuality
SIO_000300: 1.462628e6

GenotypeQuality
all individuals: 548
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6413
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 131
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2088
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40265
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 9.75e1
variant carriers: 6

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164686699277894e-4
allele num: 8586
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.724480893386844e-5
allele num: 11462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.029632636492795e-4
allele num: 9854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.612262468482873e-5
allele num: 65044
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.084e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.24e-1

DP
type: SiteQuality
SIO_000300: 1.462628e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e0

FS
type: SiteQuality
SIO_000300: 2.1238e1

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

VQSLOD
type: SiteQuality
SIO_000300: -2.287e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.06e-1

GenotypeQuality
all individuals: 585
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40364
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2252
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2129
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1329
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.219809709685289e-4
allele num: 16396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.221972887399711e-5
allele num: 65062
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.97e0

VQSLOD
type: SiteQuality
SIO_000300: -2.327e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.13e-1

FS
type: SiteQuality
SIO_000300: 2.1547e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
SIO_000300: 1.075e1

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

DP
type: SiteQuality
SIO_000300: 1.462554e6

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605522
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605522.1:n.480+1130T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+17534T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.219+1130T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.536+1130T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473974
ensembl transcript: ENST00000605006
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605006.1:c.118+17534T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000465787
ensembl transcript: ENST00000586255
gene symbol: ZNF559
hgvsc: ENST00000586255.1:c.327+1130T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000442832
ensembl transcript: ENST00000538743
gene symbol: ZNF559
hgvsc: ENST00000538743.1:c.623T>C
hgvsp: ENSP00000442832.1:p.Ile208Thr
variant of: http://identifiers.org/hgnc/28197

GenotypeDepth
all individuals: 627
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3505
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1933
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 715
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 166
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1101
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 246
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8609
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2119
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 123
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 840
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 39798
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 81
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 439
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 48
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1527
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2674
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2778
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5426
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1849
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40602
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10182
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.475e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 5.686e0

MQRankSum
type: SiteQuality
SIO_000300: -8.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.101e0

DP
type: SiteQuality
SIO_000300: 1.444057e6

GenotypeQuality
all individuals: 205
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 525
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2124
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.099048548426445e-5
allele num: 16396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65066
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.89e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e0

FS
type: SiteQuality
SIO_000300: 5.537e0

VQSLOD
type: SiteQuality
SIO_000300: -6.314e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.25e-1

QD
type: SiteQuality
SIO_000300: 1.088e1

DP
type: SiteQuality
SIO_000300: 1.463166e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.66e-1

GenotypeQuality
all individuals: 2124
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 565
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40457
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65066
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.743071291615827e-4
allele num: 11474
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

DP
type: SiteQuality
SIO_000300: 1.463166e6

QD
type: SiteQuality
SIO_000300: 1.088e1

MQ
type: SiteQuality
SIO_000300: 5.89e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.66e-1

FS
type: SiteQuality
SIO_000300: 5.537e0

MQRankSum
type: SiteQuality
SIO_000300: -3.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.314e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e0

GenotypeQuality
all individuals: 199
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 234
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2114
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.716875871687587e-5
allele num: 11472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536617597344725e-5
allele num: 65078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.463989e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.252e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.659e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.556e1

MQRankSum
type: SiteQuality
SIO_000300: -3.21e-1

FS
type: SiteQuality
SIO_000300: 3.903e0

GenotypeQuality
all individuals: 514
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2289
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1335
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2006
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65116
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.743375174337517e-4
allele num: 11472
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.466862e6

MQ
type: SiteQuality
SIO_000300: 6.065e1

FS
type: SiteQuality
SIO_000300: 1.523e0

QD
type: SiteQuality
SIO_000300: 8.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.05e-1

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6569
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2154
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2286
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.030632809351068e-4
allele num: 9924
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.842468908337172e-4
allele num: 65130
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.86e-1

FS
type: SiteQuality
SIO_000300: 4.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
SIO_000300: 1.296e1

MQ
type: SiteQuality
SIO_000300: 5.92e1

DP
type: SiteQuality
SIO_000300: 1.46877e6

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

GenotypeQuality
all individuals: 6527
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2186
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2132
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 15
allele frequency: 1.515151515151515e-3
allele num: 9900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65050
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.15e-1

QD
type: SiteQuality
SIO_000300: 1.266e1

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.004e0

DP
type: SiteQuality
SIO_000300: 1.467921e6

MQ
type: SiteQuality
SIO_000300: 5.932e1

VQSLOD
type: SiteQuality
SIO_000300: 4.3e0

GenotypeQuality
all individuals: 179
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40907
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2142
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 528
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6527
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6330
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.011736139214893e-4
allele num: 9884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65058
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.36e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

MQ
type: SiteQuality
SIO_000300: 5.931e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e0

MQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.78e0

DP
type: SiteQuality
SIO_000300: 1.470384e6

GenotypeQuality
all individuals: 250
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6527
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2262
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.023472278429786e-4
allele num: 9884
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.447381302006853e-4
allele num: 16344
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.141552511415525e-3
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.100749520655395e-4
allele num: 11474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.579778830963665e-4
allele num: 6330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 122
allele frequency: 1.875249777121953e-3
allele num: 65058
num of homozygotes: 1

DP
type: SiteQuality
SIO_000300: 1.470384e6

MQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.64e-1

QD
type: SiteQuality
SIO_000300: 1.36e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.15e-1

GenotypeQuality
all individuals: 167
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40970
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1341
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2021
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 119
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6541
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537468097536976e-5
allele num: 65042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.985e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.352e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -6.857e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.34e-1

DP
type: SiteQuality
SIO_000300: 1.46714e6

QD
type: SiteQuality
SIO_000300: 7.54e0

GenotypeQuality
all individuals: 2138
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537042729787888e-5
allele num: 65060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.18e-1

QD
type: SiteQuality
SIO_000300: 1.624e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.38e-1

FS
type: SiteQuality
SIO_000300: 1.445e0

VQSLOD
type: SiteQuality
SIO_000300: 1.94e-1

DP
type: SiteQuality
SIO_000300: 1.466438e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.314e0

MQ
type: SiteQuality
SIO_000300: 5.906e1

GenotypeQuality
all individuals: 476
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2286
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2362
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2140
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40962
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537515375153751e-5
allele num: 65040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.466167e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.054e0

MQ
type: SiteQuality
SIO_000300: 5.92e1

MQRankSum
type: SiteQuality
SIO_000300: -1.643e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

FS
type: SiteQuality
SIO_000300: 7.727e0

VQSLOD
type: SiteQuality
SIO_000300: -7.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.239e0

QD
type: SiteQuality
SIO_000300: 1.363e1