X-142716557-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716557
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716557
    reference: chr 0
allele count: 1
allele frequency: 1.143510577472842e-5
allele num: 87450
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2368A>T
  hgvsp: ENSP00000336627.4:p.Ser790Cys
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2368A>T
  hgvsp: ENSP00000371198.4:p.Ser790Cys
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2368A>T
  hgvsp: ENSP00000349400.1:p.Ser790Cys
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser790Cys
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

X-142716559-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716559
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716559
    reference: chr 0
allele count: 1
allele frequency: 1.143144562061318e-5
allele num: 87478
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2366A>C
  hgvsp: ENSP00000336627.4:p.Lys789Thr
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2366A>C
  hgvsp: ENSP00000349400.1:p.Lys789Thr
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2366A>C
  hgvsp: ENSP00000371198.4:p.Lys789Thr
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4529
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  variant carriers: 1
hgvs: p.Lys789Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

X-142716569-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716569
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716569
    reference: chr 0
allele count: 1
allele frequency: 1.143602117951122e-5
allele num: 87443
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2356C>A
  hgvsp: ENSP00000336627.4:p.Pro786Thr
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2356C>A
  hgvsp: ENSP00000371198.4:p.Pro786Thr
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2356C>A
  hgvsp: ENSP00000349400.1:p.Pro786Thr
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Pro786Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD

X-142716580-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716580
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716580
    reference: chr 0
allele count: 10
allele frequency: 1.144190942584498e-4
allele num: 87398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2345C>T
  hgvsp: ENSP00000349400.1:p.Pro782Leu
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2345C>T
  hgvsp: ENSP00000371198.4:p.Pro782Leu
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2345C>T
  hgvsp: ENSP00000336627.4:p.Pro782Leu
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro782Leu
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ

X-142716586-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716586
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716586
    reference: chr 0
allele count: 4
allele frequency: 4.579750632578056e-5
allele num: 87341
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2339G>A
  hgvsp: ENSP00000336627.4:p.Arg780His
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2339G>A
  hgvsp: ENSP00000371198.4:p.Arg780His
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2339G>A
  hgvsp: ENSP00000349400.1:p.Arg780His
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
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genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14351
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1570
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1131
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4530
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg780His
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

X-142716587-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716587
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716587
    reference: chr 0
allele count: 1
allele frequency: 1.144741059572325e-5
allele num: 87356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2338C>T
  hgvsp: ENSP00000336627.4:p.Arg780Cys
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2338C>T
  hgvsp: ENSP00000371198.4:p.Arg780Cys
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2338C>T
  hgvsp: ENSP00000349400.1:p.Arg780Cys
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 291
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg780Cys
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

X-142716622-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716622
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716622
    reference: chr 0
allele count: 2
allele frequency: 2.292684045211729e-5
allele num: 87234
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2303A>G
  hgvsp: ENSP00000336627.4:p.Glu768Gly
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2303A>G
  hgvsp: ENSP00000349400.1:p.Glu768Gly
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2303A>G
  hgvsp: ENSP00000371198.4:p.Glu768Gly
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 41867
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  variant carriers: 0
hgvs: p.Glu768Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

X-142716657-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716657
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716656
    reference: chr 0
allele count: 1
allele frequency: 1.145987325380181e-5
allele num: 87261
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2267delA
  hgvsp: ENSP00000336627.4:p.Asn756MetfsTer17
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2267delA
  hgvsp: ENSP00000349400.1:p.Asn756MetfsTer17
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2267delA
  hgvsp: ENSP00000371198.4:p.Asn756MetfsTer17
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33859
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
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  variant carriers: 0
hgvs: p.Asn756MetfsTer17
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: AT
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-142716660-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716660
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716660
    reference: chr 0
allele count: 75
allele frequency: 8.595594471313636e-4
allele num: 87254
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2265C>T
  hgvsp: ENST00000356928.1:c.2265C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2265C>T
  hgvsp: ENST00000338017.4:c.2265C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2265C>T
  hgvsp: ENST00000381779.4:c.2265C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 33880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 43092
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5468
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4592
  bin: 9.75e1
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser755Ser
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP

X-142716669-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716669
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716669
    reference: chr 0
allele count: 3
allele frequency: 3.436032527774596e-5
allele num: 87310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2256C>T
  hgvsp: ENST00000338017.4:c.2256C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2256C>T
  hgvsp: ENST00000381779.4:c.2256C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2256C>T
  hgvsp: ENST00000356928.1:c.2256C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser752Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

X-142716669-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716669
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716669
    reference: chr 0
allele count: 1
allele frequency: 1.145344175924865e-5
allele num: 87310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2256C>A
  hgvsp: ENSP00000349400.1:p.Ser752Arg
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2256C>A
  hgvsp: ENSP00000336627.4:p.Ser752Arg
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2256C>A
  hgvsp: ENSP00000371198.4:p.Ser752Arg
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 543
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser752Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

X-142716686-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716686
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716686
    reference: chr 0
allele count: 1
allele frequency: 1.144190942584499e-5
allele num: 87398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2239G>A
  hgvsp: ENSP00000349400.1:p.Asp747Asn
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2239G>A
  hgvsp: ENSP00000371198.4:p.Asp747Asn
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2239G>A
  hgvsp: ENSP00000336627.4:p.Asp747Asn
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1120
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44084
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp747Asn
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-142716698-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716698
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716698
    reference: chr 0
allele count: 1
allele frequency: 1.143667512980626e-5
allele num: 87438
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2227A>G
  hgvsp: ENSP00000349400.1:p.Ile743Val
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2227A>G
  hgvsp: ENSP00000336627.4:p.Ile743Val
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2227A>G
  hgvsp: ENSP00000371198.4:p.Ile743Val
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 330
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44166
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile743Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD

X-142716718-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716718
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716718
    reference: chr 0
allele count: 6
allele frequency: 6.86365352277017e-5
allele num: 87417
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2207C>G
  hgvsp: ENSP00000371198.4:p.Thr736Ser
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2207C>G
  hgvsp: ENSP00000349400.1:p.Thr736Ser
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2207C>G
  hgvsp: ENSP00000336627.4:p.Thr736Ser
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 8.25e1
  variant carriers: 1
hgvs: p.Thr736Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

X-142716721-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716721
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716721
    reference: chr 0
allele count: 2
allele frequency: 2.287491993778022e-5
allele num: 87432
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2204A>T
  hgvsp: ENSP00000349400.1:p.Asp735Val
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2204A>T
  hgvsp: ENSP00000371198.4:p.Asp735Val
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2204A>T
  hgvsp: ENSP00000336627.4:p.Asp735Val
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 56
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  variant carriers: 0
hgvs: p.Asp735Val
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS

X-142716721-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716721
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716721
    reference: chr 0
allele count: 4
allele frequency: 4.574983987556043e-5
allele num: 87432
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2204A>C
  hgvsp: ENSP00000336627.4:p.Asp735Ala
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2204A>C
  hgvsp: ENSP00000371198.4:p.Asp735Ala
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2204A>C
  hgvsp: ENSP00000349400.1:p.Asp735Ala
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 43942
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp735Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

X-142716727-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716727
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716727
    reference: chr 0
allele count: 1
allele frequency: 1.14386374295094e-5
allele num: 87423
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2198A>T
  hgvsp: ENSP00000336627.4:p.His733Leu
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2198A>T
  hgvsp: ENSP00000349400.1:p.His733Leu
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2198A>T
  hgvsp: ENSP00000371198.4:p.His733Leu
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 43920
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His733Leu
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

X-142716745-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716745
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716745
    reference: chr 0
allele count: 2
allele frequency: 2.288827090557444e-5
allele num: 87381
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2180A>C
  hgvsp: ENSP00000336627.4:p.Lys727Thr
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2180A>C
  hgvsp: ENSP00000371198.4:p.Lys727Thr
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2180A>C
  hgvsp: ENSP00000349400.1:p.Lys727Thr
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 342
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  variant carriers: 0
hgvs: p.Lys727Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

X-142716747-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716747
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716747
    reference: chr 0
allele count: 44
allele frequency: 5.035592483233766e-4
allele num: 87378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2178C>A
  hgvsp: ENSP00000336627.4:p.Asp726Glu
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2178C>A
  hgvsp: ENSP00000349400.1:p.Asp726Glu
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2178C>A
  hgvsp: ENSP00000371198.4:p.Asp726Glu
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Asp726Glu
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

X-142716763-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716763
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716763
    reference: chr 0
allele count: 1
allele frequency: 1.144649336675709e-5
allele num: 87363
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2162T>A
  hgvsp: ENSP00000349400.1:p.Met721Lys
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2162T>A
  hgvsp: ENSP00000371198.4:p.Met721Lys
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2162T>A
  hgvsp: ENSP00000336627.4:p.Met721Lys
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 99
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  variant carriers: 0
hgvs: p.Met721Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

X-142716764-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716764
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716764
    reference: chr 0
allele count: 1
allele frequency: 1.144754164043272e-5
allele num: 87355
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2161A>G
  hgvsp: ENSP00000349400.1:p.Met721Val
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2161A>G
  hgvsp: ENSP00000336627.4:p.Met721Val
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2161A>G
  hgvsp: ENSP00000371198.4:p.Met721Val
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33583
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 192
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 537
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5406
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 740
  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 822
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1425
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met721Val
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff

X-142716767-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716767
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716767
    reference: chr 0
allele count: 26
allele frequency: 2.976531196336577e-4
allele num: 87350
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2158G>T
  hgvsp: ENSP00000371198.4:p.Val720Phe
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2158G>T
  hgvsp: ENSP00000349400.1:p.Val720Phe
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2158G>T
  hgvsp: ENSP00000336627.4:p.Val720Phe
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 483
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1677
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 26
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 293
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1429
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4549
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val720Phe
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

X-142716770-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716770
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716770
    reference: chr 0
allele count: 3
allele frequency: 3.434970287507013e-5
allele num: 87337
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2155G>T
  hgvsp: ENSP00000371198.4:p.Val719Phe
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2155G>T
  hgvsp: ENSP00000336627.4:p.Val719Phe
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2155G>T
  hgvsp: ENSP00000349400.1:p.Val719Phe
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33433
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 194
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val719Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD

X-142716798-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716798
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716798
    reference: chr 0
allele count: 1
allele frequency: 1.144596930191033e-5
allele num: 87367
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2127C>T
  hgvsp: ENST00000381779.4:c.2127C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2127C>T
  hgvsp: ENST00000356928.1:c.2127C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2127C>T
  hgvsp: ENST00000338017.4:c.2127C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Phe709Phe
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

X-142716800-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716800
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716800
    reference: chr 0
allele count: 1
allele frequency: 1.144741059572325e-5
allele num: 87356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2125T>A
  hgvsp: ENSP00000336627.4:p.Phe709Ile
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2125T>A
  hgvsp: ENSP00000371198.4:p.Phe709Ile
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2125T>A
  hgvsp: ENSP00000349400.1:p.Phe709Ile
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4534
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Phe709Ile
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

X-142716806-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716806
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716806
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 87393
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2119A>G
  hgvsp: ENSP00000349400.1:p.Thr707Ala
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2119A>G
  hgvsp: ENSP00000371198.4:p.Thr707Ala
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2119A>G
  hgvsp: ENSP00000336627.4:p.Thr707Ala
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 251
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1519
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr707Ala
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD

X-142716810-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716810
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716810
    reference: chr 0
allele count: 1
allele frequency: 1.144190942584499e-5
allele num: 87398
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2115A>G
  hgvsp: ENST00000381779.4:c.2115A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2115A>G
  hgvsp: ENST00000338017.4:c.2115A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2115A>G
  hgvsp: ENST00000356928.1:c.2115A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser705Ser
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

X-142716819-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716819
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716819
    reference: chr 0
allele count: 2
allele frequency: 2.297741320282163e-5
allele num: 87042
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2106G>T
  hgvsp: ENSP00000349400.1:p.Leu702Phe
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2106G>T
  hgvsp: ENSP00000336627.4:p.Leu702Phe
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2106G>T
  hgvsp: ENSP00000371198.4:p.Leu702Phe
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 4931
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5424
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu702Phe
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-142716840-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716840
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716840
    reference: chr 0
allele count: 1
allele frequency: 1.142217501056551e-5
allele num: 87549
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2085C>G
  hgvsp: ENSP00000336627.4:p.Ser695Arg
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2085C>G
  hgvsp: ENSP00000349400.1:p.Ser695Arg
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2085C>G
  hgvsp: ENSP00000371198.4:p.Ser695Arg
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 33
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hgvs: p.Ser695Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

X-142716871-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716871
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716871
    reference: chr 0
allele count: 1
allele frequency: 1.140979416731322e-5
allele num: 87644
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2054C>G
  hgvsp: ENSP00000371198.4:p.Ala685Gly
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2054C>G
  hgvsp: ENSP00000349400.1:p.Ala685Gly
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2054C>G
  hgvsp: ENSP00000336627.4:p.Ala685Gly
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34481
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Ala685Gly
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

X-142716880-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716880
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716880
    reference: chr 0
allele count: 1
allele frequency: 1.140966398539563e-5
allele num: 87645
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2045G>A
  hgvsp: ENSP00000371198.4:p.Ser682Asn
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2045G>A
  hgvsp: ENSP00000349400.1:p.Ser682Asn
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2045G>A
  hgvsp: ENSP00000336627.4:p.Ser682Asn
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 199
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Ser682Asn
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

X-142716915-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716915
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716915
    reference: chr 0
allele count: 1
allele frequency: 1.140927345746623e-5
allele num: 87648
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.2010G>A
  hgvsp: ENST00000381779.4:c.2010G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.2010G>A
  hgvsp: ENST00000338017.4:c.2010G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.2010G>A
  hgvsp: ENST00000356928.1:c.2010G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 199
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Lys670Lys
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD

X-142716933-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716933
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716933
    reference: chr 0
allele count: 1
allele frequency: 1.141396155777747e-5
allele num: 87612
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1992G>A
  hgvsp: ENSP00000336627.4:p.Met664Ile
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1992G>A
  hgvsp: ENSP00000371198.4:p.Met664Ile
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1992G>A
  hgvsp: ENSP00000349400.1:p.Met664Ile
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 4634
  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Met664Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

X-142716934-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716934
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716934
    reference: chr 0
allele count: 2
allele frequency: 2.282662040471598e-5
allele num: 87617
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1991T>C
  hgvsp: ENSP00000336627.4:p.Met664Thr
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1991T>C
  hgvsp: ENSP00000371198.4:p.Met664Thr
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1991T>C
  hgvsp: ENSP00000349400.1:p.Met664Thr
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 270
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 547
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genotype quality: GenotypeQuality
  all individuals: 1542
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  variant carriers: 0
hgvs: p.Met664Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff

X-142716959-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716959
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716959
    reference: chr 0
allele count: 1
allele frequency: 1.141800162135623e-5
allele num: 87581
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1966C>T
  hgvsp: ENST00000381779.4:c.1966C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1966C>T
  hgvsp: ENST00000338017.4:c.1966C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1966C>T
  hgvsp: ENST00000356928.1:c.1966C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 13
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  variant carriers: 0
hgvs: p.Leu656Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP

X-142716966-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716966
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716966
    reference: chr 0
allele count: 1
allele frequency: 1.142204454597373e-5
allele num: 87550
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1959C>T
  hgvsp: ENST00000338017.4:c.1959C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1959C>T
  hgvsp: ENST00000381779.4:c.1959C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1959C>T
  hgvsp: ENST00000356928.1:c.1959C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 192
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  variant carriers: 0
hgvs: p.His653His
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP

X-142716967-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716967
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716967
    reference: chr 0
allele count: 1
allele frequency: 1.142139226771743e-5
allele num: 87555
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1958A>T
  hgvsp: ENSP00000349400.1:p.His653Leu
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1958A>T
  hgvsp: ENSP00000336627.4:p.His653Leu
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1958A>T
  hgvsp: ENSP00000371198.4:p.His653Leu
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 4633
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 8.75e1
  variant carriers: 0
hgvs: p.His653Leu
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD

X-142716992-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716992
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716992
    reference: chr 0
allele count: 2
allele frequency: 2.285009197162019e-5
allele num: 87527
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1933C>T
  hgvsp: ENSP00000336627.4:p.Arg645Cys
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1933C>T
  hgvsp: ENSP00000371198.4:p.Arg645Cys
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1933C>T
  hgvsp: ENSP00000349400.1:p.Arg645Cys
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5522
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg645Cys
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

X-142716995-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716995
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716995
    reference: chr 0
allele count: 1
allele frequency: 1.142661258070045e-5
allele num: 87515
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1930C>A
  hgvsp: ENST00000381779.4:c.1930C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1930C>A
  hgvsp: ENST00000356928.1:c.1930C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1930C>A
  hgvsp: ENST00000338017.4:c.1930C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg644Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

X-142716999-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142716999
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142716999
    reference: chr 0
allele count: 1
allele frequency: 1.14234798204229e-5
allele num: 87539
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1926C>T
  hgvsp: ENST00000338017.4:c.1926C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1926C>T
  hgvsp: ENST00000356928.1:c.1926C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1926C>T
  hgvsp: ENST00000381779.4:c.1926C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Val642Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

X-142717014-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717014
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717014
    reference: chr 0
allele count: 1
allele frequency: 1.142582922955633e-5
allele num: 87521
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1911C>T
  hgvsp: ENST00000356928.1:c.1911C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1911C>T
  hgvsp: ENST00000381779.4:c.1911C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1911C>T
  hgvsp: ENST00000338017.4:c.1911C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 482
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 547
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5582
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Cys637Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-142717032-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717032
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717032
    reference: chr 0
allele count: 2
allele frequency: 2.284356725146199e-5
allele num: 87552
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1893G>A
  hgvsp: ENST00000338017.4:c.1893G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1893G>A
  hgvsp: ENST00000356928.1:c.1893G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1893G>A
  hgvsp: ENST00000381779.4:c.1893G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 741
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  variant carriers: 0
hgvs: p.Thr631Thr
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

X-142717033-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717033
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717033
    reference: chr 0
allele count: 1
allele frequency: 1.142139226771743e-5
allele num: 87555
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1892C>T
  hgvsp: ENSP00000349400.1:p.Thr631Met
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1892C>T
  hgvsp: ENSP00000336627.4:p.Thr631Met
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1892C>T
  hgvsp: ENSP00000371198.4:p.Thr631Met
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 550
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  variant carriers: 0
hgvs: p.Thr631Met
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

X-142717052-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717052
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717052
    reference: chr 0
allele count: 1
allele frequency: 1.142060963214216e-5
allele num: 87561
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1873T>G
  hgvsp: ENSP00000349400.1:p.Leu625Val
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1873T>G
  hgvsp: ENSP00000336627.4:p.Leu625Val
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1873T>G
  hgvsp: ENSP00000371198.4:p.Leu625Val
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5070
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Leu625Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-142717062-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717062
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717062
    reference: chr 0
allele count: 5
allele frequency: 5.709457144814671e-5
allele num: 87574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1863C>T
  hgvsp: ENST00000338017.4:c.1863C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1863C>T
  hgvsp: ENST00000381779.4:c.1863C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1863C>T
  hgvsp: ENST00000356928.1:c.1863C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 4635
  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 5643
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile621Ile
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ

X-142717095-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717095
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717095
    reference: chr 0
allele count: 1
allele frequency: 1.142308834616527e-5
allele num: 87542
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1830T>C
  hgvsp: ENST00000356928.1:c.1830T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1830T>C
  hgvsp: ENST00000381779.4:c.1830T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1830T>C
  hgvsp: ENST00000338017.4:c.1830T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro610Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

X-142717102-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717102
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717102
    reference: chr 0
allele count: 1
allele frequency: 1.142478492842372e-5
allele num: 87529
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1823G>A
  hgvsp: ENSP00000371198.4:p.Arg608Gln
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1823G>A
  hgvsp: ENSP00000349400.1:p.Arg608Gln
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1823G>A
  hgvsp: ENSP00000336627.4:p.Arg608Gln
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Arg608Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

X-142717109-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717109
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717109
    reference: chr 0
allele count: 1
allele frequency: 1.14268737216185e-5
allele num: 87513
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1816C>T
  hgvsp: ENSP00000349400.1:p.Pro606Ser
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1816C>T
  hgvsp: ENSP00000336627.4:p.Pro606Ser
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1816C>T
  hgvsp: ENSP00000371198.4:p.Pro606Ser
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Pro606Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

X-142717118-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717118
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717118
    reference: chr 0
allele count: 1
allele frequency: 1.142765721599415e-5
allele num: 87507
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1807C>T
  hgvsp: ENSP00000349400.1:p.Pro603Ser
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1807C>T
  hgvsp: ENSP00000336627.4:p.Pro603Ser
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1807C>T
  hgvsp: ENSP00000371198.4:p.Pro603Ser
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5634
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro603Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

X-142717138-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717138
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717138
    reference: chr 0
allele count: 8
allele frequency: 9.143797647758056e-5
allele num: 87491
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1787C>T
  hgvsp: ENSP00000371198.4:p.Pro596Leu
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1787C>T
  hgvsp: ENSP00000349400.1:p.Pro596Leu
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1787C>T
  hgvsp: ENSP00000336627.4:p.Pro596Leu
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 419
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5585
  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4646
  bin: 9.75e1
  variant carriers: 8
hgvs: p.Pro596Leu
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

X-142717140-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717140
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717140
    reference: chr 0
allele count: 3153
allele frequency: 3.926476631673329e-2
allele num: 80301
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1785A>C
  hgvsp: ENST00000338017.4:c.1785A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1785A>C
  hgvsp: ENST00000381779.4:c.1785A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1785A>C
  hgvsp: ENST00000356928.1:c.1785A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 6.75e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 5.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 7.25e1
  variant carriers: 202
genotype depth: GenotypeDepth
  all individuals: 3658
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12753
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  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 7.75e1
  variant carriers: 204
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 206
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 3971
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.25e1
  variant carriers: 210
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 8.75e1
  variant carriers: 217
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 3.75e1
  variant carriers: 96
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 95
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 94
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 68
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 86
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 92
genotype quality: GenotypeQuality
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  variant carriers: 104
genotype quality: GenotypeQuality
  all individuals: 36845
  bin: 6.25e1
  variant carriers: 94
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 3.25e1
  variant carriers: 104
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 9.25e1
  variant carriers: 95
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 8.75e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 8.25e1
  variant carriers: 92
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 4402
  bin: 6.75e1
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 5.25e1
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 1.25e1
  variant carriers: 89
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 4.25e1
  variant carriers: 104
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 7.75e1
  variant carriers: 105
hgvs: p.Ala595Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-142717141-GCA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717141
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717139
    reference: chr 0
allele count: 5
allele frequency: 5.731972945087699e-5
allele num: 87230
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1782_1783delTG
  hgvsp: ENSP00000371198.4:p.Ala595ThrfsTer65
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1782_1783delTG
  hgvsp: ENSP00000336627.4:p.Ala595ThrfsTer65
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1782_1783delTG
  hgvsp: ENSP00000349400.1:p.Ala595ThrfsTer65
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17786
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 292
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 366
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6173
  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 44400
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 420
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3133
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala595ThrfsTer65
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: GCA
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

X-142717142-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717142
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717142
    reference: chr 0
allele count: 1
allele frequency: 1.147921114860987e-5
allele num: 87114
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1783G>A
  hgvsp: ENSP00000371198.4:p.Ala595Thr
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1783G>A
  hgvsp: ENSP00000349400.1:p.Ala595Thr
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1783G>A
  hgvsp: ENSP00000336627.4:p.Ala595Thr
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6142
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala595Thr
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ

X-142717143-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717143
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717143
    reference: chr 0
allele count: 23
allele frequency: 2.637463448196778e-4
allele num: 87205
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1782T>C
  hgvsp: ENST00000381779.4:c.1782T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1782T>C
  hgvsp: ENST00000356928.1:c.1782T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1782T>C
  hgvsp: ENST00000338017.4:c.1782T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
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  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 222
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1153
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3076
  bin: 9.75e1
  variant carriers: 18
hgvs: p.Pro594Pro
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: A
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

X-142717150-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717150
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717150
    reference: chr 0
allele count: 1
allele frequency: 1.143275254950382e-5
allele num: 87468
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1775C>A
  hgvsp: ENSP00000371198.4:p.Thr592Lys
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1775C>A
  hgvsp: ENSP00000349400.1:p.Thr592Lys
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1775C>A
  hgvsp: ENSP00000336627.4:p.Thr592Lys
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3109
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr592Lys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

X-142717162-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717162
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717162
    reference: chr 0
allele count: 1
allele frequency: 1.143419051648239e-5
allele num: 87457
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1763C>T
  hgvsp: ENSP00000371198.4:p.Ser588Phe
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1763C>T
  hgvsp: ENSP00000336627.4:p.Ser588Phe
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1763C>T
  hgvsp: ENSP00000349400.1:p.Ser588Phe
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 420
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser588Phe
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

X-142717164-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717164
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717164
    reference: chr 0
allele count: 5
allele frequency: 5.720103877086408e-5
allele num: 87411
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1761G>A
  hgvsp: ENST00000356928.1:c.1761G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1761G>A
  hgvsp: ENST00000381779.4:c.1761G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1761G>A
  hgvsp: ENST00000338017.4:c.1761G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 364
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3098
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 355
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 294
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44634
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro587Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

X-142717193-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717193
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717193
    reference: chr 0
allele count: 1
allele frequency: 1.141800162135623e-5
allele num: 87581
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1732A>G
  hgvsp: ENSP00000349400.1:p.Ile578Val
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1732A>G
  hgvsp: ENSP00000371198.4:p.Ile578Val
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1732A>G
  hgvsp: ENSP00000336627.4:p.Ile578Val
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 297
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile578Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

X-142717195-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717195
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717195
    reference: chr 0
allele count: 1
allele frequency: 1.141669806258634e-5
allele num: 87591
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1730A>C
  hgvsp: ENSP00000371198.4:p.Glu577Ala
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1730A>C
  hgvsp: ENSP00000336627.4:p.Glu577Ala
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1730A>C
  hgvsp: ENSP00000349400.1:p.Glu577Ala
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6177
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 416
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu577Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff

X-142717201-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717201
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717201
    reference: chr 0
allele count: 1
allele frequency: 1.141370100668843e-5
allele num: 87614
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1724A>G
  hgvsp: ENSP00000349400.1:p.Lys575Arg
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1724A>G
  hgvsp: ENSP00000371198.4:p.Lys575Arg
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1724A>G
  hgvsp: ENSP00000336627.4:p.Lys575Arg
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 298
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  variant carriers: 0
hgvs: p.Lys575Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

X-142717209-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717209
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717209
    reference: chr 0
allele count: 1
allele frequency: 1.140979416731322e-5
allele num: 87644
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1716G>A
  hgvsp: ENST00000356928.1:c.1716G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1716G>A
  hgvsp: ENST00000381779.4:c.1716G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1716G>A
  hgvsp: ENST00000338017.4:c.1716G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6345
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genotype quality: GenotypeQuality
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys572Lys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

X-142717221-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717221
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717221
    reference: chr 0
allele count: 10
allele frequency: 1.140458920669677e-4
allele num: 87684
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1704C>T
  hgvsp: ENST00000338017.4:c.1704C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1704C>T
  hgvsp: ENST00000356928.1:c.1704C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1704C>T
  hgvsp: ENST00000381779.4:c.1704C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn568Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

X-142717222-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717222
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717222
    reference: chr 0
allele count: 1
allele frequency: 1.140445914352512e-5
allele num: 87685
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1703A>G
  hgvsp: ENSP00000371198.4:p.Asn568Ser
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1703A>G
  hgvsp: ENSP00000336627.4:p.Asn568Ser
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1703A>G
  hgvsp: ENSP00000349400.1:p.Asn568Ser
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Asn568Ser
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-142717224-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717224
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717224
    reference: chr 0
allele count: 1
allele frequency: 1.14041990260814e-5
allele num: 87687
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1701C>T
  hgvsp: ENST00000338017.4:c.1701C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1701C>T
  hgvsp: ENST00000381779.4:c.1701C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1701C>T
  hgvsp: ENST00000356928.1:c.1701C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3093
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hgvs: p.Ala567Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

X-142717239-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717239
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717239
    reference: chr 0
allele count: 1
allele frequency: 1.140016872249709e-5
allele num: 87718
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1686G>A
  hgvsp: ENST00000338017.4:c.1686G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1686G>A
  hgvsp: ENST00000381779.4:c.1686G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1686G>A
  hgvsp: ENST00000356928.1:c.1686G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3094
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr562Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

X-142717240-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717240
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717240
    reference: chr 0
allele count: 3
allele frequency: 3.419816697824997e-5
allele num: 87724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1685C>T
  hgvsp: ENSP00000336627.4:p.Thr562Met
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1685C>T
  hgvsp: ENSP00000349400.1:p.Thr562Met
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1685C>T
  hgvsp: ENSP00000371198.4:p.Thr562Met
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18591
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genotype depth: GenotypeDepth
  all individuals: 17
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genotype depth: GenotypeDepth
  all individuals: 364
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 281
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3093
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Thr562Met
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

X-142717244-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717244
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717244
    reference: chr 0
allele count: 1
allele frequency: 1.139847944284233e-5
allele num: 87731
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1681G>A
  hgvsp: ENSP00000349400.1:p.Glu561Lys
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1681G>A
  hgvsp: ENSP00000371198.4:p.Glu561Lys
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1681G>A
  hgvsp: ENSP00000336627.4:p.Glu561Lys
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
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  variant carriers: 0
hgvs: p.Glu561Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

X-142717260-CACA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717260
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717257
    reference: chr 0
allele count: 1
allele frequency: 1.139692055206683e-5
allele num: 87743
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1662_1664delTGT
  hgvsp: ENSP00000336627.4:p.Val555del
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1662_1664delTGT
  hgvsp: ENSP00000371198.4:p.Val555del
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1662_1664delTGT
  hgvsp: ENSP00000349400.1:p.Val555del
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1352
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  variant carriers: 0
hgvs: p.Val555del
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: CACA
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

X-142717271-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717271
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717271
    reference: chr 0
allele count: 1
allele frequency: 1.139640101655897e-5
allele num: 87747
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1654G>C
  hgvsp: ENSP00000349400.1:p.Gly552Arg
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1654G>C
  hgvsp: ENSP00000371198.4:p.Gly552Arg
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1654G>C
  hgvsp: ENSP00000336627.4:p.Gly552Arg
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1354
  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3091
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly552Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS

X-142717271-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717271
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717271
    reference: chr 0
allele count: 1
allele frequency: 1.139640101655897e-5
allele num: 87747
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1654G>A
  hgvsp: ENSP00000371198.4:p.Gly552Arg
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1654G>A
  hgvsp: ENSP00000349400.1:p.Gly552Arg
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1654G>A
  hgvsp: ENSP00000336627.4:p.Gly552Arg
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 179
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly552Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

X-142717272-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717272
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717272
    reference: chr 0
allele count: 2
allele frequency: 2.279358132749818e-5
allele num: 87744
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1653C>T
  hgvsp: ENST00000381779.4:c.1653C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1653C>T
  hgvsp: ENST00000356928.1:c.1653C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1653C>T
  hgvsp: ENST00000338017.4:c.1653C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 365
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 280
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Asp551Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum

X-142717274-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717274
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717274
    reference: chr 0
allele count: 75
allele frequency: 8.547690414050124e-4
allele num: 87743
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1651G>A
  hgvsp: ENSP00000371198.4:p.Asp551Asn
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1651G>A
  hgvsp: ENSP00000349400.1:p.Asp551Asn
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1651G>A
  hgvsp: ENSP00000336627.4:p.Asp551Asn
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Asp551Asn
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

X-142717284-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717284
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717284
    reference: chr 0
allele count: 1
allele frequency: 1.139692055206683e-5
allele num: 87743
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1641G>A
  hgvsp: ENST00000356928.1:c.1641G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1641G>A
  hgvsp: ENST00000338017.4:c.1641G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1641G>A
  hgvsp: ENST00000381779.4:c.1641G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46677
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu547Glu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

X-142717335-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717335
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717335
    reference: chr 0
allele count: 100
allele frequency: 1.140133851714191e-3
allele num: 87709
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1590C>A
  hgvsp: ENST00000338017.4:c.1590C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1590C>A
  hgvsp: ENST00000381779.4:c.1590C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1590C>A
  hgvsp: ENST00000356928.1:c.1590C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18518
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30018
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 9.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3142
  bin: 9.75e1
  variant carriers: 96
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45867
  bin: 6.25e1
  variant carriers: 1
hgvs: p.Gly530Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

X-142717349-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717349
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717349
    reference: chr 0
allele count: 1
allele frequency: 1.14009485589201e-5
allele num: 87712
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1576A>T
  hgvsp: ENSP00000371198.4:p.Ile526Phe
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1576A>T
  hgvsp: ENSP00000336627.4:p.Ile526Phe
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1576A>T
  hgvsp: ENSP00000349400.1:p.Ile526Phe
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6221
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1338
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1552
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6324
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3052
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46075
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile526Phe
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum

X-142717362-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717362
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717362
    reference: chr 0
allele count: 2
allele frequency: 2.280007752026357e-5
allele num: 87719
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1563A>G
  hgvsp: ENST00000356928.1:c.1563A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1563A>G
  hgvsp: ENST00000381779.4:c.1563A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1563A>G
  hgvsp: ENST00000338017.4:c.1563A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6327
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3053
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1338
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln521Gln
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff

X-142717383-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24142717383
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24142717383
    reference: chr 0
allele count: 4092
allele frequency: 4.66494904124581e-2
allele num: 87718
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000336627
  ensembl transcript: ENST00000338017
  gene symbol: SLITRK4
  hgvsc: ENST00000338017.4:c.1542T>C
  hgvsp: ENST00000338017.4:c.1542T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000371198
  ensembl transcript: ENST00000381779
  gene symbol: SLITRK4
  hgvsc: ENST00000381779.4:c.1542T>C
  hgvsp: ENST00000381779.4:c.1542T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179542
  ensembl protein: ENSP00000349400
  ensembl transcript: ENST00000356928
  gene symbol: SLITRK4
  hgvsc: ENST00000356928.1:c.1542T>C
  hgvsp: ENST00000356928.1:c.1542T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23502
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29232
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5850
  bin: 3.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 90
hgvs: p.Ser514Ser
num of homozygotes: 678
reference allele: A

GenotypeQuality
all individuals: 4529
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9929
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.174812030075188e-4
allele num: 8512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.546e0

MQRankSum
type: SiteQuality
SIO_000300: -4.3e-2

QD
type: SiteQuality
SIO_000300: 1.129e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 1.875e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.41e-1

DP
type: SiteQuality
SIO_000300: 1.600115e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.591e0

GenotypeQuality
all individuals: 752
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.087682672233821e-5
allele num: 47900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9949
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.079e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e0

QD
type: SiteQuality
SIO_000300: 1.371e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: -8.3e-1

DP
type: SiteQuality
SIO_000300: 1.599237e6

VQSLOD
type: SiteQuality
SIO_000300: 2.35e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9315
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.087987806151212e-5
allele num: 47893
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9927
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.88e-1

DP
type: SiteQuality
SIO_000300: 1.596248e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

FS
type: SiteQuality
SIO_000300: 5.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.56e-1

QD
type: SiteQuality
SIO_000300: 1.286e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 8

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6633
num of homozygotes: 0

European (Non-Finnish)
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allele count: 10
allele frequency: 2.088554720133667e-4
allele num: 47880
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.411e0

FS
type: SiteQuality
SIO_000300: 5.600000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.591251e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.79e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.088991017338625e-5
allele num: 47870
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.027369488089204e-4
allele num: 9865
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Other
type: Population
allele count: 1
allele frequency: 1.594896331738437e-3
allele num: 627
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6631
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.2e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

FS
type: SiteQuality
SIO_000300: 4.963e0

VQSLOD
type: SiteQuality
SIO_000300: -9.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-1

DP
type: SiteQuality
SIO_000300: 1.588996e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.820000000000001e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47871
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

East Asian
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allele frequency: 1.507840772014475e-4
allele num: 6632
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.58e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 1.259e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.766e0

DP
type: SiteQuality
SIO_000300: 1.588027e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e0

QD
type: SiteQuality
SIO_000300: 1.151e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47823
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 2.148689299527288e-4
allele num: 9308
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.216e1

MQ
type: SiteQuality
SIO_000300: 5.979e1

FS
type: SiteQuality
SIO_000300: 3.234e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.81e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.081e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.58028e6

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.186380353541345e-4
allele num: 8429
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9931
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47815
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.7258e1

VQSLOD
type: SiteQuality
SIO_000300: -1.012e0

MQ
type: SiteQuality
SIO_000300: 6.059e1

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.320000000000001e-1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.588527e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9932
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 74
allele frequency: 1.116812556595231e-2
allele num: 6626
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.6e-3
allele num: 625
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47807
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.581e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.598298e6

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.091131511260743e-5
allele num: 47821
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 2.148458481039854e-4
allele num: 9309
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.98e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.81e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 2.091131511260743e-5
allele num: 47821
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 9972
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European (Finnish)
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allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

South Asian
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allele frequency: 9.961151509114453e-5
allele num: 10039
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47834
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 630
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

VQSLOD
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QD
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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FS
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 2.090257310674944e-5
allele num: 47841
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

InbreedingCoeff
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QD
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.86e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 10073
num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 1.255151350333661e-4
allele num: 47803
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele num: 9312
num of homozygotes: 0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.934e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
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num of homozygotes: 0

African
type: Population
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num of homozygotes: 0

South Asian
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European (Non-Finnish)
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allele frequency: 4.18296279254596e-5
allele num: 47813
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

European (Finnish)
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allele frequency: 2.207505518763797e-4
allele num: 4530
num of homozygotes: 0

Other
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 6.27444418881894e-5
allele num: 47813
num of homozygotes: 0

African
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South Asian
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allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 1.598169e6

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.21e-2

MQ
type: SiteQuality
SIO_000300: 5.949e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.92e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.88e-1

QD
type: SiteQuality
SIO_000300: 1.965e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8431
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6635
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.091656382689452e-5
allele num: 47809
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9313
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10074
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.291e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-2

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.597346e6

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.963e0

QD
type: SiteQuality
SIO_000300: 2.275e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9311
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
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African
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 4.184713242525056e-5
allele num: 47793
num of homozygotes: 0

East Asian
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num of homozygotes: 0

South Asian
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
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QD
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DP
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 7.33e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
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allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 2.207505518763797e-4
allele num: 4530
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 2.147766323024055e-4
allele num: 9312
num of homozygotes: 0

European (Non-Finnish)
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allele count: 21
allele frequency: 4.39413278650792e-4
allele num: 47791
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East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 20
allele frequency: 1.989258006763477e-3
allele num: 10054
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.839e0

MQRankSum
type: SiteQuality
SIO_000300: 5.06e-1

FS
type: SiteQuality
SIO_000300: 5.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.031e-1

DP
type: SiteQuality
SIO_000300: 1.594191e6

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8429
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9311
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 9.968102073365231e-5
allele num: 10032
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47794
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DP
type: SiteQuality
SIO_000300: 1.587783e6

QD
type: SiteQuality
SIO_000300: 1.616e1

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

FS
type: SiteQuality
SIO_000300: 6.31e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.983e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.541e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

VQSLOD
type: SiteQuality
SIO_000300: 1.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.506704836522525e-4
allele num: 6637
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8429
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
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allele count: 0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47793
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.52e-1

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.55e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 3.085e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.21e-1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

GenotypeQuality
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bin: 3.75e1
variant carriers: 1

Latino
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allele frequency: 1.073767851390529e-4
allele num: 9313
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 1.046178310631264e-4
allele num: 47793
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8429
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
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South Asian
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allele frequency: 1.996406468356957e-3
allele num: 10018
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VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.48e-1

QD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.787e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47778
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10019
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8429
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 3.221303554171588e-4
allele num: 9313
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.99e1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47796
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.073537305421363e-4
allele num: 9315
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10006
num of homozygotes: 0

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
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allele frequency: 9.994003597841295e-5
allele num: 10006
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

VQSLOD
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MQRankSum
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DP
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QD
type: SiteQuality
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ClippingRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
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allele num: 630
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 47809
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 8451
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European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
type: SiteQuality
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MQ
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FS
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VQSLOD
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QD
type: SiteQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.091743886878491e-5
allele num: 47807
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

VQSLOD
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QD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 8367
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.197095609837992e-5
allele num: 47652
num of homozygotes: 0

East Asian
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num of homozygotes: 0

FS
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
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num of homozygotes: 0

South Asian
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Latino
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allele frequency: 1.073191672032625e-4
allele num: 9318
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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QD
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FS
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ReadPosRankSum
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ClippingRankSum
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MQ
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DP
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GenotypeQuality
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variant carriers: 0

African
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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Latino
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Other
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European (Finnish)
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MQ
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SIO_000300: 5.977e1

InbreedingCoeff
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QD
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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MQRankSum
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DP
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SIO_000300: 1.619165e6

GenotypeQuality
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variant carriers: 0

Latino
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European (Non-Finnish)
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South Asian
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African
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East Asian
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allele frequency: 1.506477854775535e-4
allele num: 6638
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European (Finnish)
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Other
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DP
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FS
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VQSLOD
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QD
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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MQ
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GenotypeQuality
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Latino
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South Asian
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European (Finnish)
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African
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European (Non-Finnish)
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Other
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East Asian
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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FS
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MQRankSum
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MQ
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 2.085984271678592e-5
allele num: 47939
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East Asian
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Other
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Latino
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African
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European (Finnish)
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South Asian
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DP
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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ReadPosRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.38e-1

GenotypeQuality
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variant carriers: 0

East Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9321
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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European (Non-Finnish)
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African
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VQSLOD
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FS
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MQ
type: SiteQuality
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QD
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DP
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 9320
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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East Asian
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South Asian
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VQSLOD
type: SiteQuality
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QD
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MQ
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 7.049999999999999e-2

FS
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DP
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GenotypeQuality
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variant carriers: 0

African
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Latino
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Other
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South Asian
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FS
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InbreedingCoeff
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QD
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VQSLOD
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MQ
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DP
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GenotypeQuality
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variant carriers: 0

East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Latino
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European (Non-Finnish)
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African
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InbreedingCoeff
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DP
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VQSLOD
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MQ
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FS
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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Other
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Latino
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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InbreedingCoeff
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MQ
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FS
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DP
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MQRankSum
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

Latino
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South Asian
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East Asian
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African
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European (Finnish)
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Other
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European (Non-Finnish)
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MQRankSum
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ClippingRankSum
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FS
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MQ
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QD
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DP
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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Other
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African
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South Asian
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European (Non-Finnish)
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Latino
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East Asian
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BaseQRankSum
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MQ
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VQSLOD
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FS
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ReadPosRankSum
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DP
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InbreedingCoeff
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MQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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African
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South Asian
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Latino
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European (Non-Finnish)
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Other
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East Asian
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FS
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MQRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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VQSLOD
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DP
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QD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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African
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East Asian
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European (Non-Finnish)
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South Asian
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Other
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Latino
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European (Finnish)
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ClippingRankSum
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MQRankSum
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VQSLOD
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MQ
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FS
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InbreedingCoeff
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QD
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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African
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European (Finnish)
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Latino
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East Asian
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South Asian
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Other
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DP
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InbreedingCoeff
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QD
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MQ
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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European (Non-Finnish)
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Latino
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South Asian
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East Asian
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European (Finnish)
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African
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Other
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MQRankSum
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ClippingRankSum
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VQSLOD
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QD
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MQ
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BaseQRankSum
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DP
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FS
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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European (Non-Finnish)
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South Asian
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African
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allele frequency: 5.94035879767138e-4
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European (Finnish)
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allele frequency: 0.0e0
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QD
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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FS
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DP
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BaseQRankSum
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MQ
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 47955
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 1.07342206955775e-4
allele num: 9316
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
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Other
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South Asian
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East Asian
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ClippingRankSum
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FS
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VQSLOD
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QD
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MQ
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 2.085418752085419e-5
allele num: 47952
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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Latino
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allele frequency: 0.0e0
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South Asian
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FS
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MQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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BaseQRankSum
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DP
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InbreedingCoeff
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QD
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
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European (Non-Finnish)
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allele frequency: 2.085418752085419e-5
allele num: 47952
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African
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South Asian
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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DP
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QD
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MQ
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FS
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.269e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47949
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Latino
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allele frequency: 1.073767851390529e-4
allele num: 9313
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African
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allele frequency: 0.0e0
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Other
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South Asian
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MQ
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ReadPosRankSum
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FS
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DP
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MQRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 8429
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 630
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European (Non-Finnish)
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allele count: 8
allele frequency: 1.668961488713648e-4
allele num: 47934
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South Asian
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
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East Asian
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VQSLOD
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QD
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BaseQRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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DP
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MQ
type: SiteQuality
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3659

Latino
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allele count: 149
allele frequency: 1.676794958361467e-2
allele num: 8886
num of homozygotes: 0

European (Finnish)
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allele count: 244
allele frequency: 6.214977075904228e-2
allele num: 3926
num of homozygotes: 0

East Asian
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allele count: 119
allele frequency: 1.853293879458028e-2
allele num: 6421
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European (Non-Finnish)
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allele count: 2210
allele frequency: 5.089820359281437e-2
allele num: 43420
num of homozygotes: 0

South Asian
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allele count: 29
allele frequency: 2.956468549291467e-3
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African
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allele count: 371
allele frequency: 5.103865731187233e-2
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Other
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allele count: 31
allele frequency: 5.43859649122807e-2
allele num: 570
num of homozygotes: 0

QD
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.921e1

InbreedingCoeff
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BaseQRankSum
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VQSLOD
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FS
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 5
allele frequency: 1.046287770988533e-4
allele num: 47788
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MQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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FS
type: SiteQuality
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QD
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DP
type: SiteQuality
SIO_000300: 1.674913e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
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Latino
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allele frequency: 1.074113856068743e-4
allele num: 9310
num of homozygotes: 0

European (Non-Finnish)
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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VQSLOD
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InbreedingCoeff
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DP
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QD
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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FS
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

African
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South Asian
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allele frequency: 7.007007007007007e-4
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.349172126514977e-4
allele num: 47773
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European (Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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QD
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DP
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MQ
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ReadPosRankSum
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ClippingRankSum
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FS
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MQRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.086680716983494e-5
allele num: 47923
num of homozygotes: 0

FS
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ClippingRankSum
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QD
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ReadPosRankSum
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VQSLOD
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DP
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MQRankSum
type: SiteQuality
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BaseQRankSum
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MQ
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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num of homozygotes: 0

Other
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East Asian
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Latino
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South Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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FS
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DP
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MQRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele num: 47908
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Latino
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 1
allele frequency: 2.207505518763797e-4
allele num: 4530
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Other
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East Asian
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allele frequency: 1.506477854775535e-4
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South Asian
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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ClippingRankSum
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FS
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BaseQRankSum
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VQSLOD
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QD
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DP
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.085201326188043e-5
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num of homozygotes: 0

MQ
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ReadPosRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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VQSLOD
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FS
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MQRankSum
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QD
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InbreedingCoeff
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 2.085157846448976e-5
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Latino
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South Asian
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African
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Other
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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VQSLOD
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DP
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MQ
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QD
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FS
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.164e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
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South Asian
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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Latino
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allele num: 9323
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ReadPosRankSum
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DP
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BaseQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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FS
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InbreedingCoeff
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QD
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MQRankSum
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SIO_000300: -7.199999999999999e-2

GenotypeQuality
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variant carriers: 0

Latino
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European (Non-Finnish)
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European (Finnish)
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allele num: 4530
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East Asian
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South Asian
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African
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Other
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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QD
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FS
type: SiteQuality
SIO_000300: 1.3181e1

MQ
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SIO_000300: 5.931e1

ReadPosRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.875898868207683e-4
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European (Finnish)
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allele num: 4530
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Latino
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African
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South Asian
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East Asian
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Other
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VQSLOD
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ClippingRankSum
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FS
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MQ
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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QD
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DP
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.99e1

MQRankSum
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DP
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FS
type: SiteQuality
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InbreedingCoeff
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QD
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BaseQRankSum
type: SiteQuality
SIO_000300: 8.08e0

ReadPosRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.073e0

GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
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East Asian
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Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.084288632289799e-5
allele num: 47978
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South Asian
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ReadPosRankSum
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QD
type: SiteQuality
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BaseQRankSum
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MQRankSum
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FS
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MQ
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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VQSLOD
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DP
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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Latino
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allele num: 9324
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European (Non-Finnish)
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Other
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East Asian
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South Asian
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African
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DP
type: SiteQuality
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BaseQRankSum
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MQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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QD
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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African
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Other
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South Asian
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European (Non-Finnish)
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East Asian
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Latino
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European (Finnish)
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InbreedingCoeff
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DP
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BaseQRankSum
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FS
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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QD
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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African
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South Asian
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Other
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Latino
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European (Non-Finnish)
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FS
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VQSLOD
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DP
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QD
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MQ
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

South Asian
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East Asian
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European (Finnish)
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Latino
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African
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European (Non-Finnish)
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Other
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QD
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FS
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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DP
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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Other
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European (Finnish)
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South Asian
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African
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MQRankSum
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DP
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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MQ
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ClippingRankSum
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FS
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GenotypeQuality
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variant carriers: 0

East Asian
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European (Non-Finnish)
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African
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European (Finnish)
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Latino
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South Asian
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Other
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DP
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MQRankSum
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ReadPosRankSum
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MQ
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FS
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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South Asian
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Other
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Latino
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African
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East Asian
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European (Finnish)
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BaseQRankSum
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MQ
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QD
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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DP
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FS
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MQRankSum
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GenotypeQuality
all individuals: 417
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

South Asian
type: Population
allele count: 72
allele frequency: 7.114624505928853e-3
allele num: 10120
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47984
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 4.739336492890996e-3
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e-1

DP
type: SiteQuality
SIO_000300: 1.67698e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.053e1

VQSLOD
type: SiteQuality
SIO_000300: 5.545e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.787e-1

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10121
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47983
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.04e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: -4.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.138e0

DP
type: SiteQuality
SIO_000300: 1.672982e6

QD
type: SiteQuality
SIO_000300: 1.312e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-1

FS
type: SiteQuality
SIO_000300: 1.907e0

MQ
type: SiteQuality
SIO_000300: 5.869e1

VQSLOD
type: SiteQuality
SIO_000300: -8.643e-1

GenotypeQuality
all individuals: 6307
bin: 6.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 71
allele frequency: 1.480122579165711e-3
allele num: 47969
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.348796241926013e-4
allele num: 8515
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 25
allele frequency: 2.681540276734957e-3
allele num: 9323
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10103
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.169572107765452e-3
allele num: 631
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.103e-1

QD
type: SiteQuality
SIO_000300: 1.881e1

DP
type: SiteQuality
SIO_000300: 1.678576e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.385e0

VQSLOD
type: SiteQuality
SIO_000300: 3.341e1

GenotypeQuality
all individuals: 165
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.084766610377968e-5
allele num: 47967
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10107
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

FS
type: SiteQuality
SIO_000300: 1.557e0

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.173e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

DP
type: SiteQuality
SIO_000300: 1.668115e6

QD
type: SiteQuality
SIO_000300: 1.565e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.654e0

GenotypeQuality
all individuals: 46240
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.169272461955389e-5
allele num: 47970
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10113
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

MQRankSum
type: SiteQuality
SIO_000300: -4.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

QD
type: SiteQuality
SIO_000300: 1.827e1

VQSLOD
type: SiteQuality
SIO_000300: -1.895e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.669279e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.119999999999999e-2