19-50361811-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361811
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361811
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 42900
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.412G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*127C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.846C>T
  hgvsp: ENST00000601638.1:c.846C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.316C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.135C>T
  hgvsp: ENST00000601093.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.942C>T
  hgvsp: ENST00000599732.1:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1223C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.846C>T
  hgvsp: ENST00000221557.9:c.846C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.942C>T
  hgvsp: ENST00000391842.1:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.942C>T
  hgvsp: ENST00000601675.1:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.846C>T
  hgvsp: ENST00000600603.1:c.846C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.257G>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-127G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.903C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.960C>T
  variant of: http://identifiers.org/hgnc/9632
canonical: false
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 35215
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: n.412G>A
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum

19-50361814-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361814
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361814
    reference: chr 19
allele count: 3
allele frequency: 6.708107866374491e-5
allele num: 44722
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1226A>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.945A>G
  hgvsp: ENST00000601675.1:c.945A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.945A>G
  hgvsp: ENST00000599732.1:c.945A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*130A>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.945A>G
  hgvsp: ENST00000391842.1:c.945A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.963A>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.849A>G
  hgvsp: ENST00000600603.1:c.849A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.849A>G
  hgvsp: ENST00000221557.9:c.849A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.906A>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.254T>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.138A>G
  hgvsp: ENST00000601093.1:c.138A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.409T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.319A>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.849A>G
  hgvsp: ENST00000601638.1:c.849A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-130T>C
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu315Leu
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

19-50361819-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361819
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361819
    reference: chr 19
allele count: 1
allele frequency: 2.096787721211105e-5
allele num: 47692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.968C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.249G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.143C>T
  hgvsp: ENSP00000469838.1:p.Pro48Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.950C>T
  hgvsp: ENSP00000469128.1:p.Pro317Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.911C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.854C>T
  hgvsp: ENSP00000469541.1:p.Pro285Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.854C>T
  hgvsp: ENSP00000471458.1:p.Pro285Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.854C>T
  hgvsp: ENSP00000221557.9:p.Pro285Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.404G>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.950C>T
  hgvsp: ENSP00000375717.1:p.Pro317Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.324C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.950C>T
  hgvsp: ENSP00000472816.1:p.Pro317Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*135C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1231C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-135G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12160
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro317Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ

19-50361820-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361820
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361820
    reference: chr 19
allele count: 3
allele frequency: 6.196042794002231e-5
allele num: 48418
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.951G>A
  hgvsp: ENST00000601675.1:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.855G>A
  hgvsp: ENST00000601638.1:c.855G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.403C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.855G>A
  hgvsp: ENST00000600603.1:c.855G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1232G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.969G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.951G>A
  hgvsp: ENST00000599732.1:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.855G>A
  hgvsp: ENST00000221557.9:c.855G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-136C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.912G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.144G>A
  hgvsp: ENST00000601093.1:c.144G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.248C>T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.951G>A
  hgvsp: ENST00000391842.1:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.325G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*136G>A
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 33111
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12470
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5195
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro317Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-50361827-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361827
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361827
    reference: chr 19
allele count: 3
allele frequency: 5.785028346638898e-5
allele num: 51858
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.862C>A
  hgvsp: ENST00000600603.1:c.862C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1239C>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.958C>A
  hgvsp: ENST00000601675.1:c.958C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.919C>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.241G>T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.958C>A
  hgvsp: ENST00000391842.1:c.958C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.862C>A
  hgvsp: ENST00000221557.9:c.862C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.151C>A
  hgvsp: ENST00000601093.1:c.151C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*143C>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.332C>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.862C>A
  hgvsp: ENST00000601638.1:c.862C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.958C>A
  hgvsp: ENST00000599732.1:c.958C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.396G>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-143G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.976C>A
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31947
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13527
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg320Arg
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ

19-50361828-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361828
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361828
    reference: chr 19
allele count: 1
allele frequency: 1.903094431545693e-5
allele num: 52546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.863G>A
  hgvsp: ENSP00000469541.1:p.Arg288Gln
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.863G>A
  hgvsp: ENSP00000221557.9:p.Arg288Gln
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.959G>A
  hgvsp: ENSP00000472816.1:p.Arg320Gln
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.395C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.977G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.959G>A
  hgvsp: ENSP00000469128.1:p.Arg320Gln
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.152G>A
  hgvsp: ENSP00000469838.1:p.Arg51Gln
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.333G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.959G>A
  hgvsp: ENSP00000375717.1:p.Arg320Gln
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.240C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.920G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-144C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.863G>A
  hgvsp: ENSP00000471458.1:p.Arg288Gln
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*144G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1240G>A
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5316
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg320Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

19-50361830-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361830
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361830
    reference: chr 19
allele count: 1
allele frequency: 1.866089423005151e-5
allele num: 53588
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.238T>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-146T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.961A>G
  hgvsp: ENSP00000472816.1:p.Asn321Asp
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.961A>G
  hgvsp: ENSP00000375717.1:p.Asn321Asp
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.865A>G
  hgvsp: ENSP00000221557.9:p.Asn289Asp
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.865A>G
  hgvsp: ENSP00000469541.1:p.Asn289Asp
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.961A>G
  hgvsp: ENSP00000469128.1:p.Asn321Asp
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1242A>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.393T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.865A>G
  hgvsp: ENSP00000471458.1:p.Asn289Asp
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.922A>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.154A>G
  hgvsp: ENSP00000469838.1:p.Asn52Asp
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.335A>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.979A>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*146A>G
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31480
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn321Asp
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

19-50361834-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361834
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361834
    reference: chr 19
allele count: 1
allele frequency: 1.821692716872518e-5
allele num: 54894
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-150G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.983C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.234G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.869C>T
  hgvsp: ENSP00000469541.1:p.Ser290Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.965C>T
  hgvsp: ENSP00000375717.1:p.Ser322Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.339C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.869C>T
  hgvsp: ENSP00000221557.9:p.Ser290Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.965C>T
  hgvsp: ENSP00000472816.1:p.Ser322Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.869C>T
  hgvsp: ENSP00000471458.1:p.Ser290Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.965C>T
  hgvsp: ENSP00000469128.1:p.Ser322Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.158C>T
  hgvsp: ENSP00000469838.1:p.Ser53Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.926C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.389G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*150C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1246C>T
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30848
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5350
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser322Leu
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum

19-50361835-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361835
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361835
    reference: chr 19
allele count: 5
allele frequency: 8.947104716913607e-5
allele num: 55884
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.870G>A
  hgvsp: ENST00000221557.9:c.870G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.966G>A
  hgvsp: ENST00000391842.1:c.966G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-151C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.870G>A
  hgvsp: ENST00000601638.1:c.870G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.966G>A
  hgvsp: ENST00000599732.1:c.966G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.159G>A
  hgvsp: ENST00000601093.1:c.159G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.870G>A
  hgvsp: ENST00000600603.1:c.870G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.984G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.388C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1247G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*151G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.927G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.966G>A
  hgvsp: ENST00000601675.1:c.966G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.233C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.340G>A
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5272
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30520
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser322Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

19-50361836-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361836
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361836
    reference: chr 19
allele count: 3
allele frequency: 5.323301866704521e-5
allele num: 56356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*152C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-152G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.387G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.871C>T
  hgvsp: ENSP00000221557.9:p.Arg291Cys
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.871C>T
  hgvsp: ENSP00000469541.1:p.Arg291Cys
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.232G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.967C>T
  hgvsp: ENSP00000469128.1:p.Arg323Cys
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1248C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.967C>T
  hgvsp: ENSP00000472816.1:p.Arg323Cys
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.160C>T
  hgvsp: ENSP00000469838.1:p.Arg54Cys
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.341C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.967C>T
  hgvsp: ENSP00000375717.1:p.Arg323Cys
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.871C>T
  hgvsp: ENSP00000471458.1:p.Arg291Cys
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.928C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.985C>T
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15390
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg323Cys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-50361841-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361841
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361841
    reference: chr 19
allele count: 7
allele frequency: 1.190233285724002e-4
allele num: 58812
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.165G>T
  hgvsp: ENST00000601093.1:c.165G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1253G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.972G>T
  hgvsp: ENST00000601675.1:c.972G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*157G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.876G>T
  hgvsp: ENST00000221557.9:c.876G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.346G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.876G>T
  hgvsp: ENST00000601638.1:c.876G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.972G>T
  hgvsp: ENST00000599732.1:c.972G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.990G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.972G>T
  hgvsp: ENST00000391842.1:c.972G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-157C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.227C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.933G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.876G>T
  hgvsp: ENST00000600603.1:c.876G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.382C>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16538
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5324
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu324Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

19-50361844-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361844
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361844
    reference: chr 19
allele count: 2
allele frequency: 3.353341604909292e-5
allele num: 59642
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.993C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-160G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.975C>T
  hgvsp: ENST00000391842.1:c.975C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*160C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.975C>T
  hgvsp: ENST00000601675.1:c.975C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.975C>T
  hgvsp: ENST00000599732.1:c.975C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.379G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.168C>T
  hgvsp: ENST00000601093.1:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.879C>T
  hgvsp: ENST00000601638.1:c.879C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.936C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.879C>T
  hgvsp: ENST00000221557.9:c.879C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.349C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.224G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.879C>T
  hgvsp: ENST00000600603.1:c.879C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1256C>T
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28954
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5454
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val325Val
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum

19-50361847-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361847
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361847
    reference: chr 19
allele count: 18
allele frequency: 2.986065029860651e-4
allele num: 60280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.882G>A
  hgvsp: ENST00000600603.1:c.882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.882G>A
  hgvsp: ENST00000601638.1:c.882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.882G>A
  hgvsp: ENST00000221557.9:c.882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.978G>A
  hgvsp: ENST00000391842.1:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*163G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.978G>A
  hgvsp: ENST00000601675.1:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.171G>A
  hgvsp: ENST00000601093.1:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.221C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.939G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.352G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-163C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.376C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.978G>A
  hgvsp: ENST00000599732.1:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1259G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.996G>A
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5592
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16889
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28714
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Gln326Gln
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

19-50361852-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361852
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361852
    reference: chr 19
allele count: 1
allele frequency: 1.630470227613644e-5
allele num: 61332
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-168T>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.887A>T
  hgvsp: ENSP00000221557.9:p.His296Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.944A>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.887A>T
  hgvsp: ENSP00000471458.1:p.His296Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.983A>T
  hgvsp: ENSP00000375717.1:p.His328Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*168A>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.176A>T
  hgvsp: ENSP00000469838.1:p.His59Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.983A>T
  hgvsp: ENSP00000469128.1:p.His328Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.887A>T
  hgvsp: ENSP00000469541.1:p.His296Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1001A>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.983A>T
  hgvsp: ENSP00000472816.1:p.His328Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.357A>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.216T>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.371T>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1264A>T
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His328Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum

19-50361856-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361856
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361856
    reference: chr 19
allele count: 847
allele frequency: 1.367584848386993e-2
allele num: 61934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.891C>T
  hgvsp: ENST00000221557.9:c.891C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.948C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*172C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.361C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.212G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.891C>T
  hgvsp: ENST00000600603.1:c.891C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-172G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.891C>T
  hgvsp: ENST00000601638.1:c.891C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.987C>T
  hgvsp: ENST00000391842.1:c.987C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1005C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.367G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.180C>T
  hgvsp: ENST00000601093.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1268C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.987C>T
  hgvsp: ENST00000599732.1:c.987C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.987C>T
  hgvsp: ENST00000601675.1:c.987C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 16285
  bin: 2.25e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27778
  bin: 7.5e0
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 3.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 2.75e1
  variant carriers: 71
genotype quality: GenotypeQuality
hgvs: p.Phe329Phe
num of homozygotes: 38
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

19-50361858-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361858
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361858
    reference: chr 19
allele count: 1
allele frequency: 1.61980044058572e-5
allele num: 61736
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.989C>T
  hgvsp: ENSP00000375717.1:p.Thr330Ile
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*174C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-174G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.989C>T
  hgvsp: ENSP00000469128.1:p.Thr330Ile
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.893C>T
  hgvsp: ENSP00000471458.1:p.Thr298Ile
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.893C>T
  hgvsp: ENSP00000469541.1:p.Thr298Ile
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1270C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.893C>T
  hgvsp: ENSP00000221557.9:p.Thr298Ile
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.363C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.989C>T
  hgvsp: ENSP00000472816.1:p.Thr330Ile
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.950C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.365G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.210G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.182C>T
  hgvsp: ENSP00000469838.1:p.Thr61Ile
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1007C>T
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27929
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6636
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr330Ile
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

19-50361865-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361865
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361865
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 60034
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-181G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.900C>G
  hgvsp: ENSP00000471458.1:p.Asp300Glu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.900C>G
  hgvsp: ENSP00000469541.1:p.Asp300Glu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.203G>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.996C>G
  hgvsp: ENSP00000375717.1:p.Asp332Glu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.996C>G
  hgvsp: ENSP00000469128.1:p.Asp332Glu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.189C>G
  hgvsp: ENSP00000469838.1:p.Asp63Glu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*181C>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1277C>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.996C>G
  hgvsp: ENSP00000472816.1:p.Asp332Glu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.900C>G
  hgvsp: ENSP00000221557.9:p.Asp300Glu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.358G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.370C>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.957C>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1014C>G
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7941
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28395
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp332Glu
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

19-50361869-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361869
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361869
    reference: chr 19
allele count: 1
allele frequency: 1.68061577762092e-5
allele num: 59502
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.193G>A
  hgvsp: ENSP00000469838.1:p.Glu65Lys
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.199C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1000G>A
  hgvsp: ENSP00000375717.1:p.Glu334Lys
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.961G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.354C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.904G>A
  hgvsp: ENSP00000221557.9:p.Glu302Lys
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-185C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1000G>A
  hgvsp: ENSP00000469128.1:p.Glu334Lys
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1018G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1000G>A
  hgvsp: ENSP00000472816.1:p.Glu334Lys
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*185G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.904G>A
  hgvsp: ENSP00000471458.1:p.Glu302Lys
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.904G>A
  hgvsp: ENSP00000469541.1:p.Glu302Lys
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.374G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1281G>A
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12781
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu334Lys
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

19-50361871-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361871
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361871
    reference: chr 19
allele count: 2
allele frequency: 3.40529864469114e-5
allele num: 58732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.963G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*187G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1002G>A
  hgvsp: ENST00000391842.1:c.1002G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.906G>A
  hgvsp: ENST00000601638.1:c.906G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1002G>A
  hgvsp: ENST00000599732.1:c.1002G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.197C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1283G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1002G>A
  hgvsp: ENST00000601675.1:c.1002G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.195G>A
  hgvsp: ENST00000601093.1:c.195G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.906G>A
  hgvsp: ENST00000221557.9:c.906G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.352C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.906G>A
  hgvsp: ENST00000600603.1:c.906G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1020G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.376G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-187C>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu334Glu
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

19-50361874-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361874
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361874
    reference: chr 19
allele count: 273
allele frequency: 4.666826216280898e-3
allele num: 58498
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.349T>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.909A>G
  hgvsp: ENST00000601638.1:c.909A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.909A>G
  hgvsp: ENST00000600603.1:c.909A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1005A>G
  hgvsp: ENST00000601675.1:c.1005A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1005A>G
  hgvsp: ENST00000391842.1:c.1005A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.379A>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.909A>G
  hgvsp: ENST00000221557.9:c.909A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.198A>G
  hgvsp: ENST00000601093.1:c.198A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1023A>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-190T>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*190A>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1005A>G
  hgvsp: ENST00000599732.1:c.1005A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.194T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1286A>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.966A>G
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11791
  bin: 2.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 28782
  bin: 7.5e0
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 8909
  bin: 1.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 3.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
hgvs: p.Thr335Thr
num of homozygotes: 5
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

19-50361875-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361875
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361875
    reference: chr 19
allele count: 2
allele frequency: 3.458771444382955e-5
allele num: 57824
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1287C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1006C>T
  hgvsp: ENST00000599732.1:c.1006C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.910C>T
  hgvsp: ENST00000600603.1:c.910C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*191C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.193G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.380C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.348G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.910C>T
  hgvsp: ENST00000601638.1:c.910C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.967C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.910C>T
  hgvsp: ENST00000221557.9:c.910C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.199C>T
  hgvsp: ENST00000601093.1:c.199C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1006C>T
  hgvsp: ENST00000601675.1:c.1006C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-191G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1006C>T
  hgvsp: ENST00000391842.1:c.1006C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1024C>T
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu336Leu
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

19-50361880-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361880
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361880
    reference: chr 19
allele count: 1
allele frequency: 1.739251426186169e-5
allele num: 57496
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1292G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*196G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-196C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.915G>A
  hgvsp: ENST00000221557.9:c.915G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1011G>A
  hgvsp: ENST00000599732.1:c.1011G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.343C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.915G>A
  hgvsp: ENST00000601638.1:c.915G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.204G>A
  hgvsp: ENST00000601093.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1011G>A
  hgvsp: ENST00000391842.1:c.1011G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.915G>A
  hgvsp: ENST00000600603.1:c.915G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1011G>A
  hgvsp: ENST00000601675.1:c.1011G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.385G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.188C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1029G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.972G>A
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9448
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28954
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys337Lys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

19-50361882-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361882
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361882
    reference: chr 19
allele count: 1
allele frequency: 1.761493746697199e-5
allele num: 56770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1013G>A
  hgvsp: ENSP00000472816.1:p.Ser338Asn
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1013G>A
  hgvsp: ENSP00000469128.1:p.Ser338Asn
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.917G>A
  hgvsp: ENSP00000469541.1:p.Ser306Asn
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1294G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1013G>A
  hgvsp: ENSP00000375717.1:p.Ser338Asn
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.387G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.917G>A
  hgvsp: ENSP00000471458.1:p.Ser306Asn
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.206G>A
  hgvsp: ENSP00000469838.1:p.Ser69Asn
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*198G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1031G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.974G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.341C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.186C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.917G>A
  hgvsp: ENSP00000221557.9:p.Ser306Asn
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-198C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9872
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28909
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser338Asn
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

19-50361882-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361882
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361882
    reference: chr 19
allele count: 1
allele frequency: 1.761493746697199e-5
allele num: 56770
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.186C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.917G>C
  hgvsp: ENSP00000469541.1:p.Ser306Thr
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.387G>C
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-198C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.917G>C
  hgvsp: ENSP00000471458.1:p.Ser306Thr
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.206G>C
  hgvsp: ENSP00000469838.1:p.Ser69Thr
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1013G>C
  hgvsp: ENSP00000472816.1:p.Ser338Thr
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.917G>C
  hgvsp: ENSP00000221557.9:p.Ser306Thr
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1013G>C
  hgvsp: ENSP00000375717.1:p.Ser338Thr
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1294G>C
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.974G>C
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1013G>C
  hgvsp: ENSP00000469128.1:p.Ser338Thr
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*198G>C
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1031G>C
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.341C>G
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28909
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser338Thr
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

19-50361889-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361889
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361889
    reference: chr 19
allele count: 2
allele frequency: 3.644314868804665e-5
allele num: 54880
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1020C>T
  hgvsp: ENST00000601675.1:c.1020C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1020C>T
  hgvsp: ENST00000599732.1:c.1020C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.185-6G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1301C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.340-6G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.924C>T
  hgvsp: ENST00000600603.1:c.924C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1038C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*205C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.924C>T
  hgvsp: ENST00000601638.1:c.924C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.394C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.213C>T
  hgvsp: ENST00000601093.1:c.213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-205G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.924C>T
  hgvsp: ENST00000221557.9:c.924C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1020C>T
  hgvsp: ENST00000391842.1:c.1020C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.981C>T
  variant of: http://identifiers.org/hgnc/9632
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9206
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3584
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28829
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: n.185-6G>A
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

19-50361891-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361891
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361891
    reference: chr 19
allele count: 2
allele frequency: 3.678228565123037e-5
allele num: 54374
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.446-207C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.340-8C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000594165
  gene symbol: PTOV1
  hgvsc: ENST00000594165.1:n.983G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.926G>A
  hgvsp: ENSP00000221557.9:p.Arg309Gln
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1303G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1022G>A
  hgvsp: ENSP00000472816.1:p.Arg341Gln
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1040G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*207G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.185-8C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1022G>A
  hgvsp: ENSP00000375717.1:p.Arg341Gln
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.926G>A
  hgvsp: ENSP00000471458.1:p.Arg309Gln
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.215G>A
  hgvsp: ENSP00000469838.1:p.Arg72Gln
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.396G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1022G>A
  hgvsp: ENSP00000469128.1:p.Arg341Gln
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.926G>A
  hgvsp: ENSP00000469541.1:p.Arg309Gln
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10971
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28950
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg341Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/19-50361895-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361895
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361895
    reference: chr 19
allele count: 4
allele frequency: 7.429972509101716e-5
allele num: 53836
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1026C>A
  hgvsp: ENST00000391842.1:c.1026C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.340-12G>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.930C>A
  hgvsp: ENST00000600603.1:c.930C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1044C>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.930C>A
  hgvsp: ENST00000221557.9:c.930C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1026C>A
  hgvsp: ENST00000599732.1:c.1026C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.219C>A
  hgvsp: ENST00000601093.1:c.219C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.400C>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1307C>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.445+205G>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.930C>A
  hgvsp: ENST00000601638.1:c.930C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1026C>A
  hgvsp: ENST00000601675.1:c.1026C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.185-12G>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*211C>A
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11329
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8205
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29086
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile342Ile
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

19-50361898-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361898
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361898
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 52912
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*214G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1047G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.933G>T
  hgvsp: ENSP00000221557.9:p.Met311Ile
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.933G>T
  hgvsp: ENSP00000469541.1:p.Met311Ile
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1029G>T
  hgvsp: ENSP00000375717.1:p.Met343Ile
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.403G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.445+202C>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1029G>T
  hgvsp: ENSP00000469128.1:p.Met343Ile
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1029G>T
  hgvsp: ENSP00000472816.1:p.Met343Ile
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1310G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.222G>T
  hgvsp: ENSP00000469838.1:p.Met74Ile
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.340-15C>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.933G>T
  hgvsp: ENSP00000471458.1:p.Met311Ile
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.185-15C>A
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4831
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met343Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-50361901-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361901
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361901
    reference: chr 19
allele count: 1
allele frequency: 1.938961492224764e-5
allele num: 51574
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.936C>T
  hgvsp: ENST00000600603.1:c.936C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.936C>T
  hgvsp: ENST00000221557.9:c.936C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.340-18G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.225C>T
  hgvsp: ENST00000601093.1:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1032C>T
  hgvsp: ENST00000601675.1:c.1032C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.406C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1032C>T
  hgvsp: ENST00000599732.1:c.1032C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1313C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1032C>T
  hgvsp: ENST00000391842.1:c.1032C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.185-18G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*217C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.936C>T
  hgvsp: ENST00000601638.1:c.936C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.445+199G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1050C>T
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5757
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6693
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp344Asp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

19-50361903-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361903
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361903
    reference: chr 19
allele count: 1
allele frequency: 1.965177062453327e-5
allele num: 50886
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*219A>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.340-20T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.408A>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.938A>G
  hgvsp: ENSP00000469541.1:p.Asn313Ser
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.445+197T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.185-20T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1034A>G
  hgvsp: ENSP00000469128.1:p.Asn345Ser
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1034A>G
  hgvsp: ENSP00000472816.1:p.Asn345Ser
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1052A>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1034A>G
  hgvsp: ENSP00000375717.1:p.Asn345Ser
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.938A>G
  hgvsp: ENSP00000221557.9:p.Asn313Ser
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1315A>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.938A>G
  hgvsp: ENSP00000471458.1:p.Asn313Ser
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.227A>G
  hgvsp: ENSP00000469838.1:p.Asn76Ser
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28490
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12155
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn345Ser
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-50361907-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361907
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361907
    reference: chr 19
allele count: 597
allele frequency: 1.207475425751385e-2
allele num: 49442
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.340-24G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1038C>T
  hgvsp: ENST00000601675.1:c.1038C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.942C>T
  hgvsp: ENST00000600603.1:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1038C>T
  hgvsp: ENST00000391842.1:c.1038C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.942C>T
  hgvsp: ENST00000221557.9:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.231C>T
  hgvsp: ENST00000601093.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.185-24G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1056C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1038C>T
  hgvsp: ENST00000599732.1:c.1038C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.445+193G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.412C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.942C>T
  hgvsp: ENST00000601638.1:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*223C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1319C>T
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 1.75e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 7323
  bin: 2.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5748
  bin: 2.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Gly346Gly
num of homozygotes: 3
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

19-50361908-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361908
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361908
    reference: chr 19
allele count: 1
allele frequency: 2.052545155993432e-5
allele num: 48720
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.445+192A>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1039T>C
  hgvsp: ENSP00000375717.1:p.Phe347Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*224T>C
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1057T>C
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.413T>C
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.943T>C
  hgvsp: ENSP00000221557.9:p.Phe315Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.185-25A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.340-25A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1320T>C
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1039T>C
  hgvsp: ENSP00000469128.1:p.Phe347Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1039T>C
  hgvsp: ENSP00000472816.1:p.Phe347Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.232T>C
  hgvsp: ENSP00000469838.1:p.Phe78Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.943T>C
  hgvsp: ENSP00000471458.1:p.Phe315Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.943T>C
  hgvsp: ENSP00000469541.1:p.Phe315Leu
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe347Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

19-50361910-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361910
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361910
    reference: chr 19
allele count: 4
allele frequency: 8.409368035992096e-5
allele num: 47566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.945C>T
  hgvsp: ENST00000601638.1:c.945C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.234C>T
  hgvsp: ENST00000601093.1:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.945C>T
  hgvsp: ENST00000600603.1:c.945C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.185-27G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1041C>T
  hgvsp: ENST00000391842.1:c.1041C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.945C>T
  hgvsp: ENST00000221557.9:c.945C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1059C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1041C>T
  hgvsp: ENST00000599732.1:c.1041C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1041C>T
  hgvsp: ENST00000601675.1:c.1041C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*226C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.445+190G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.340-27G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.415C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1322C>T
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12015
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27996
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1041C>T
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-50361919-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361919
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361919
    reference: chr 19
allele count: 1
allele frequency: 2.292105986980838e-5
allele num: 43628
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.445+181A>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*226+9T>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1059+9T>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.340-36A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1322+9T>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.945+9T>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.424T>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.234+9T>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.185-36A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1041+9T>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.945+9T>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.945+9T>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1041+9T>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1041+9T>G
  variant of: http://identifiers.org/hgnc/9632
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11963
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11260
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

19-50361924-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361924
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361924
    reference: chr 19
allele count: 6
allele frequency: 1.520527116066903e-4
allele num: 39460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*226+14G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.340-41C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1059+14G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.945+14G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1322+14G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.945+14G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1041+14G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.234+14G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1041+14G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.429G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.185-41C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1041+14G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.945+14G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.445+176C>T
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9974
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14917
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24984
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

19-50361929-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361929
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361929
    reference: chr 19
allele count: 12
allele frequency: 3.221303554171588e-4
allele num: 37252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.945+19C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1041+19C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*226+19C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.234+19C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.445+171G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1322+19C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1041+19C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.434C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.945+19C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.340-46G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.185-46G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1059+19C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.945+19C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1041+19C>T
  variant of: http://identifiers.org/hgnc/9632
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16740
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24345
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

19-50361930-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361930
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361930
    reference: chr 19
allele count: 3
allele frequency: 8.334259362151351e-5
allele num: 35996
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.945+20G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.445+170C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1059+20G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1041+20G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.234+20G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.435G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.945+20G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*226+20G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1041+20G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.185-47C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1322+20G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1041+20G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.945+20G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.340-47C>T
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8599
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23834
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17679
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

19-50361930-G-GCAGGGGAGGGGCCGGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361930
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361946
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 35996
alternate allele: GCAGGGGAGGGGCCGGC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  variant of: http://identifiers.org/hgnc/9632
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17679
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23834
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8599
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/19-50361931-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361931
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361930
    reference: chr 19
allele count: 2
allele frequency: 5.543544542380398e-5
allele num: 36078
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1059+22delA
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.185-49delT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1322+22delA
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.445+168delT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.340-49delT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.945+22delA
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1041+22delA
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1041+22delA
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.945+22delA
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1041+22delA
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.945+22delA
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.437delA
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*226+22delA
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.234+22delA
  variant of: http://identifiers.org/hgnc/9632
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 23862
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17772
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8527
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: CA
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

19-50361934-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361934
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361934
    reference: chr 19
allele count: 5
allele frequency: 1.519664458087654e-4
allele num: 32902
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1041+24G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.945+24G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1041+24G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1041+24G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.439G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.340-51C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.234+24G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1059+24G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.445+166C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*226+24G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.185-51C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.945+24G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.945+24G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1322+24G>A
  variant of: http://identifiers.org/hgnc/9632
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19993
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22736
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7357
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

19-50361943-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361943
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361943
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 29644
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1041+33C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*226+33C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1059+33C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1041+33C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.448C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.445+157G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.185-60G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.945+33C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.234+33C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.340-60G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1322+33C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1041+33C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.945+33C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.945+33C>T
  variant of: http://identifiers.org/hgnc/9632
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21866
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22415
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD

19-50361944-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361944
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361944
    reference: chr 19
allele count: 1
allele frequency: 3.440682631434077e-5
allele num: 29064
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.340-61C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.185-61C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1041+34G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.445+156C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1041+34G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1041+34G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1059+34G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.234+34G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.945+34G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.449G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.945+34G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.945+34G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1322+34G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*226+34G>A
  variant of: http://identifiers.org/hgnc/9632
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5492
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum

19-50361950-G-GGCAGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361950
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361955
    reference: chr 19
allele count: 2
allele frequency: 7.367567965814484e-5
allele num: 27146
alternate allele: GGCAGA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.458_462dupAGAGC
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1041+43_1041+47dupAGAGC
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1059+43_1059+47dupAGAGC
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.945+43_945+47dupAGAGC
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.234+43_234+47dupAGAGC
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.340-72_340-68dupTCTGC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.945+43_945+47dupAGAGC
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.445+145_445+149dupTCTGC
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1041+43_1041+47dupAGAGC
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.185-72_185-68dupTCTGC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1041+43_1041+47dupAGAGC
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*226+43_*226+47dupAGAGC
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1322+43_1322+47dupAGAGC
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.945+43_945+47dupAGAGC
  variant of: http://identifiers.org/hgnc/9632
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 22763
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22229
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4565
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

19-50361958-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361958
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361958
    reference: chr 19
allele count: 2
allele frequency: 7.975117632985087e-5
allele num: 25078
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.185-75C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1041+48G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1059+48G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*226+48G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.945+48G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.463G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1041+48G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.234+48G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.945+48G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.340-75C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1322+48G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.945+48G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1041+48G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.445+142C>T
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22666
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3192
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

19-50361960-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361960
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361960
    reference: chr 19
allele count: 1
allele frequency: 4.08730483119431e-5
allele num: 24466
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1041+50G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*226+50G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1041+50G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.340-77C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.185-77C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1059+50G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.465G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.945+50G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.445+140C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1322+50G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1041+50G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.945+50G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.234+50G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.945+50G>T
  variant of: http://identifiers.org/hgnc/9632
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22717
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22958
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-50361962-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50361962
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50361962
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 24390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1059+52C>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000599259
  gene symbol: AC018766.5
  hgvsc: ENST00000599259.1:n.185-79G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.945+52C>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1041+52C>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000596424
  gene symbol: PTOV1
  hgvsc: ENST00000596424.1:n.467C>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.945+52C>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1041+52C>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1322+52C>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.945+52C>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000593654
  gene symbol: AC018766.5
  hgvsc: ENST00000593654.1:n.340-79G>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1041+52C>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*226+52C>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269352
  ensembl transcript: ENST00000601893
  gene symbol: AC018766.5
  hgvsc: ENST00000601893.1:n.445+138G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.234+52C>A
  variant of: http://identifiers.org/hgnc/9632
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22960
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22687
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

19-50363195-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50363195
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50363196
    reference: chr 19
allele count: 1
allele frequency: 8.348639171814994e-6
allele num: 119780
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.946-117dupT
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1042-47dupT
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1323-47dupT
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267896
  ensembl transcript: ENST00000596624
  gene symbol: AC018766.4
  hgvsc: ENST00000596624.1:n.491dupA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1060-47dupT
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1042-47dupT
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.946-47dupT
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1042-47dupT
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*227-47dupT
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.235-155dupT
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.946-117dupT
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

19-50363195-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50363195
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50363195
    reference: chr 19
allele count: 1
allele frequency: 8.348639171814994e-6
allele num: 119780
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267896
  ensembl transcript: ENST00000596624
  gene symbol: AC018766.4
  hgvsc: ENST00000596624.1:n.492G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1060-48C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.946-48C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.235-156C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1042-48C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1042-48C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1042-48C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*227-48C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1323-48C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.946-118C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.946-118C>T
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30850
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-50363196-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50363196
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50363196
    reference: chr 19
allele count: 1
allele frequency: 8.344180768332166e-6
allele num: 119844
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1042-47T>C
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.235-155T>C
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.946-117T>C
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1042-47T>C
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.946-117T>C
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*227-47T>C
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1060-47T>C
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1042-47T>C
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.946-47T>C
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1323-47T>C
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267896
  ensembl transcript: ENST00000596624
  gene symbol: AC018766.4
  hgvsc: ENST00000596624.1:n.491A>G
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9508
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2367
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

19-50363198-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50363198
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50363198
    reference: chr 19
allele count: 1
allele frequency: 8.344041519950603e-6
allele num: 119846
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1323-45G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.946-115G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1060-45G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1042-45G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1042-45G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*227-45G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267896
  ensembl transcript: ENST00000596624
  gene symbol: AC018766.4
  hgvsc: ENST00000596624.1:n.489C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1042-45G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.235-153G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.946-45G>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.946-115G>T
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13854
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30931
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

19-50363200-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50363200
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50363200
    reference: chr 19
allele count: 1
allele frequency: 8.343623802689983e-6
allele num: 119852
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.946-43C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1060-43C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1042-43C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267896
  ensembl transcript: ENST00000596624
  gene symbol: AC018766.4
  hgvsc: ENST00000596624.1:n.487G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1042-43C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1323-43C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1042-43C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.946-113C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.946-113C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.235-151C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*227-43C>T
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31004
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

19-50363226-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50363226
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50363226
    reference: chr 19
allele count: 68
allele frequency: 5.661476979435517e-4
allele num: 120110
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*227-17C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1060-17C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1323-17C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1042-17C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.946-87C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.946-17C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.235-125C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.946-87C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1042-17C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267896
  ensembl transcript: ENST00000596624
  gene symbol: AC018766.4
  hgvsc: ENST00000596624.1:n.461G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1042-17C>T
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 31681
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15047
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9611
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-50363229-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50363229
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50363229
    reference: chr 19
allele count: 3
allele frequency: 2.495881795038187e-5
allele num: 120198
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1323-14C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1042-14C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1060-14C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267896
  ensembl transcript: ENST00000596624
  gene symbol: AC018766.4
  hgvsc: ENST00000596624.1:n.458G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1042-14C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.946-84C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.235-122C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1042-14C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*227-14C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.946-84C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.946-14C>T
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

19-50363234-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50363234
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50363234
    reference: chr 19
allele count: 1
allele frequency: 8.314901967305805e-6
allele num: 120266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.946-9G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267896
  ensembl transcript: ENST00000596624
  gene symbol: AC018766.4
  hgvsc: ENST00000596624.1:n.453C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.946-79G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1042-9G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1042-9G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1060-9G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1323-9G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1042-9G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.946-79G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*227-9G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.235-117G>A
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31913
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

19-50363235-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50363235
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50363235
    reference: chr 19
allele count: 1
allele frequency: 8.313104778372627e-6
allele num: 120292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1323-8C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.235-116C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.946-78C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.946-8C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1042-8C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1042-8C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1042-8C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1060-8C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267896
  ensembl transcript: ENST00000596624
  gene symbol: AC018766.4
  hgvsc: ENST00000596624.1:n.452G>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*227-8C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.946-78C>T
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1042-8C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum

19-50363239-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50363239
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50363239
    reference: chr 19
allele count: 1
allele frequency: 8.30937463646486e-6
allele num: 120346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.946-74C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.946-74C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267896
  ensembl transcript: ENST00000596624
  gene symbol: AC018766.4
  hgvsc: ENST00000596624.1:n.448G>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1042-4C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*227-4C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1060-4C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1042-4C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.946-4C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.235-112C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1323-4C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1042-4C>T
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.1042-4C>T
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

19-50363245-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50363245
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50363245
    reference: chr 19
allele count: 7
allele frequency: 5.81289133214861e-5
allele num: 120422
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1044C>T
  hgvsp: ENST00000391842.1:c.1044C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*229C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1062C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1044C>T
  hgvsp: ENST00000599732.1:c.1044C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1044C>T
  hgvsp: ENST00000601675.1:c.1044C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1325C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.946-68C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267896
  ensembl transcript: ENST00000596624
  gene symbol: AC018766.4
  hgvsc: ENST00000596624.1:n.442G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.948C>T
  hgvsp: ENST00000601638.1:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.235-106C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.946-68C>T
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: c.1044C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

19-50363246-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50363246
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50363246
    reference: chr 19
allele count: 1
allele frequency: 8.301097405076952e-6
allele num: 120466
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1045G>A
  hgvsp: ENSP00000472816.1:p.Gly349Ser
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.235-105G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.949G>A
  hgvsp: ENSP00000469541.1:p.Gly317Ser
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.946-67G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1063G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*230G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1326G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1045G>A
  hgvsp: ENSP00000469128.1:p.Gly349Ser
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1045G>A
  hgvsp: ENSP00000375717.1:p.Gly349Ser
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267896
  ensembl transcript: ENST00000596624
  gene symbol: AC018766.4
  hgvsc: ENST00000596624.1:n.441C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.946-67G>A
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly349Ser
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

19-50363251-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50363251
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50363251
    reference: chr 19
allele count: 6
allele frequency: 4.975536943361804e-5
allele num: 120590
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.954C>T
  hgvsp: ENST00000601638.1:c.954C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1050C>T
  hgvsp: ENST00000601675.1:c.1050C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.946-62C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1050C>T
  hgvsp: ENST00000599732.1:c.1050C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1331C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.235-100C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.946-62C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1068C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1050C>T
  hgvsp: ENST00000391842.1:c.1050C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*235C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267896
  ensembl transcript: ENST00000596624
  gene symbol: AC018766.4
  hgvsc: ENST00000596624.1:n.436G>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Cys350Cys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

19-50363252-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50363252
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50363252
    reference: chr 19
allele count: 1
allele frequency: 8.289674381590291e-6
allele num: 120632
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.955G>A
  hgvsp: ENSP00000469541.1:p.Val319Met
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267896
  ensembl transcript: ENST00000596624
  gene symbol: AC018766.4
  hgvsc: ENST00000596624.1:n.435C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1051G>A
  hgvsp: ENSP00000375717.1:p.Val351Met
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.235-99G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1069G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*236G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.946-61G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1051G>A
  hgvsp: ENSP00000472816.1:p.Val351Met
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1051G>A
  hgvsp: ENSP00000469128.1:p.Val351Met
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1332G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.946-61G>A
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val351Met
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

19-50363252-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50363252
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50363252
    reference: chr 19
allele count: 1
allele frequency: 8.289674381590291e-6
allele num: 120632
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.235-99G>C
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1051G>C
  hgvsp: ENSP00000375717.1:p.Val351Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.955G>C
  hgvsp: ENSP00000469541.1:p.Val319Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1051G>C
  hgvsp: ENSP00000472816.1:p.Val351Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.946-61G>C
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1069G>C
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1332G>C
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1051G>C
  hgvsp: ENSP00000469128.1:p.Val351Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*236G>C
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.946-61G>C
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267896
  ensembl transcript: ENST00000596624
  gene symbol: AC018766.4
  hgvsc: ENST00000596624.1:n.435C>G
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val351Leu
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD

19-50363255-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50363255
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50363255
    reference: chr 19
allele count: 2
allele frequency: 1.657138122462507e-5
allele num: 120690
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1072C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267896
  ensembl transcript: ENST00000596624
  gene symbol: AC018766.4
  hgvsc: ENST00000596624.1:n.432G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.958C>T
  hgvsp: ENSP00000469541.1:p.His320Tyr
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.235-96C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1054C>T
  hgvsp: ENSP00000469128.1:p.His352Tyr
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1054C>T
  hgvsp: ENSP00000375717.1:p.His352Tyr
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*239C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1054C>T
  hgvsp: ENSP00000472816.1:p.His352Tyr
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1335C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.946-58C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.946-58C>T
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9704
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His352Tyr
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-50363263-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50363263
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50363263
    reference: chr 19
allele count: 1
allele frequency: 8.278282753025713e-6
allele num: 120798
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267896
  ensembl transcript: ENST00000596624
  gene symbol: AC018766.4
  hgvsc: ENST00000596624.1:n.424G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1343C>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1062C>G
  hgvsp: ENST00000601675.1:c.1062C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1080C>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.946-50C>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1062C>G
  hgvsp: ENST00000391842.1:c.1062C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*247C>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.966C>G
  hgvsp: ENST00000601638.1:c.966C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.946-50C>G
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1062C>G
  hgvsp: ENST00000599732.1:c.1062C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.235-88C>G
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15754
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser354Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-50363266-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50363266
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50363266
    reference: chr 19
allele count: 1
allele frequency: 8.277049397430804e-6
allele num: 120816
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1065C>T
  hgvsp: ENST00000391842.1:c.1065C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*250C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1065C>T
  hgvsp: ENST00000599732.1:c.1065C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.946-47C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.235-85C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267896
  ensembl transcript: ENST00000596624
  gene symbol: AC018766.4
  hgvsc: ENST00000596624.1:n.421G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.969C>T
  hgvsp: ENST00000601638.1:c.969C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1065C>T
  hgvsp: ENST00000601675.1:c.1065C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.946-47C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1083C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1346C>T
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15787
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr355Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

19-50363274-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50363274
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50363274
    reference: chr 19
allele count: 8
allele frequency: 6.616163286909921e-5
allele num: 120916
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.977C>T
  hgvsp: ENSP00000469541.1:p.Ser326Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.946-39C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1073C>T
  hgvsp: ENSP00000472816.1:p.Ser358Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1073C>T
  hgvsp: ENSP00000469128.1:p.Ser358Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267896
  ensembl transcript: ENST00000596624
  gene symbol: AC018766.4
  hgvsc: ENST00000596624.1:n.413G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1091C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1354C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1073C>T
  hgvsp: ENSP00000375717.1:p.Ser358Leu
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*258C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.946-39C>T
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.235-77C>T
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser358Leu
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

19-50363275-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50363275
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50363275
    reference: chr 19
allele count: 14
allele frequency: 1.157617953000711e-4
allele num: 120938
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469838
  ensembl transcript: ENST00000601093
  gene symbol: PTOV1
  hgvsc: ENST00000601093.1:c.235-76G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000472816
  ensembl transcript: ENST00000601675
  gene symbol: PTOV1
  hgvsc: ENST00000601675.1:c.1074G>A
  hgvsp: ENST00000601675.1:c.1074G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000375717
  ensembl transcript: ENST00000391842
  gene symbol: PTOV1
  hgvsc: ENST00000391842.1:c.1074G>A
  hgvsp: ENST00000391842.1:c.1074G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000597793
  gene symbol: PTOV1
  hgvsc: ENST00000597793.1:n.1355G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469541
  ensembl transcript: ENST00000601638
  gene symbol: PTOV1
  hgvsc: ENST00000601638.1:c.978G>A
  hgvsp: ENST00000601638.1:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000470007
  ensembl transcript: ENST00000601612
  gene symbol: PTOV1
  hgvsc: ENST00000601612.1:c.*259G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267896
  ensembl transcript: ENST00000596624
  gene symbol: AC018766.4
  hgvsc: ENST00000596624.1:n.412C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000469128
  ensembl transcript: ENST00000599732
  gene symbol: PTOV1
  hgvsc: ENST00000599732.1:c.1074G>A
  hgvsp: ENST00000599732.1:c.1074G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000221557
  ensembl transcript: ENST00000221557
  gene symbol: PTOV1
  hgvsc: ENST00000221557.9:c.946-38G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104960
  ensembl transcript: ENST00000598325
  gene symbol: PTOV1
  hgvsc: ENST00000598325.1:n.1092G>A
  variant of: http://identifiers.org/hgnc/9632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104960
  ensembl protein: ENSP00000471458
  ensembl transcript: ENST00000600603
  gene symbol: PTOV1
  hgvsc: ENST00000600603.1:c.946-38G>A
  variant of: http://identifiers.org/hgnc/9632
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9739
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser358Ser
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 260
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2978
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 524
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1777
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1423
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34826
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3660
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1164
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1659
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10479
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2698
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9696
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2980
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

QD
type: SiteQuality
SIO_000300: 9.630000000000001e0

FS
type: SiteQuality
SIO_000300: 5.528e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

DP
type: SiteQuality
SIO_000300: 7.34447e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

GenotypeDepth
all individuals: 35
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34695
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3033
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 291
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1724
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11525
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1449
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3315
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34697
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 531
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.732099196646873e-5
allele num: 22904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.015434606011373e-4
allele num: 9848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2894
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.26e-1

FS
type: SiteQuality
SIO_000300: 1.973e0

VQSLOD
type: SiteQuality
SIO_000300: 7.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-1

QD
type: SiteQuality
SIO_000300: 1.103e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e-1

DP
type: SiteQuality
SIO_000300: 7.48859e5

GenotypeDepth
all individuals: 3201
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1459
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5110
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 261
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33591
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 453
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 511
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2865
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33737
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1669
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12474
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24704
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.048780487804878e-4
allele num: 3280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.200000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.76e-1

QD
type: SiteQuality
SIO_000300: 2.637e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.282e0

FS
type: SiteQuality
SIO_000300: 4.281e0

VQSLOD
type: SiteQuality
SIO_000300: -1.393e0

DP
type: SiteQuality
SIO_000300: 7.73664e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 1147
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1653
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 549
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12833
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1523
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2793
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 162
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1506
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 570
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33326
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3358
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 5.76036866359447e-4
allele num: 3472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10030
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.122241086587436e-4
allele num: 4712
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

QD
type: SiteQuality
SIO_000300: 4.15e0

DP
type: SiteQuality
SIO_000300: 7.82314e5

VQSLOD
type: SiteQuality
SIO_000300: -3.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.6e-3

FS
type: SiteQuality
SIO_000300: 1.6841e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 261
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3480
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1598
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 574
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 13292
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32212
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2363
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 563
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.807767752059631e-5
allele num: 10196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.33998825601879e-5
allele num: 27248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3806
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.166e0

VQSLOD
type: SiteQuality
SIO_000300: -3.366e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.98e-1

FS
type: SiteQuality
SIO_000300: 2.632e0

DP
type: SiteQuality
SIO_000300: 8.06854e5

QD
type: SiteQuality
SIO_000300: 6.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 13730
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3540
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 457
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2319
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1063
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32192
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1584
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1563
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 162
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13860
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1480
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5020
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.57864878803507e-4
allele num: 3878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27666
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

DP
type: SiteQuality
SIO_000300: 8.11946e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 1.196e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e-1

GenotypeDepth
all individuals: 17
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14017
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 453
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1019
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14147
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2166
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1559
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1583
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32041
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3988
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.541578127213486e-5
allele num: 28236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3992
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.97e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

VQSLOD
type: SiteQuality
SIO_000300: -1.466e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.49e-1

DP
type: SiteQuality
SIO_000300: 8.17055e5

GenotypeDepth
all individuals: 2026
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 261
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3717
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1441
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1138
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1550
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31493
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 546
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14532
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.439735828288387e-5
allele num: 29072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4102
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.67e0

DP
type: SiteQuality
SIO_000300: 8.3055e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.835e0

VQSLOD
type: SiteQuality
SIO_000300: -1.794e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.93e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.146e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

GenotypeDepth
all individuals: 9
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3758
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 141
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 457
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 15169
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15678
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1981
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1511
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31510
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1629
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 855
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 9.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29672
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 9.528346831824678e-4
allele num: 4198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5296
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.35626767200754e-4
allele num: 4244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.522e0

DP
type: SiteQuality
SIO_000300: 8.38436e5

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

FS
type: SiteQuality
SIO_000300: 6.673e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

QD
type: SiteQuality
SIO_000300: 2.885e1

GenotypeDepth
all individuals: 260
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1737
bin: 1.75e1
variant carriers: 2

GenotypeDepth
all individuals: 1166
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15871
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 31307
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 596
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1943
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1495
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1379
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 767
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1641
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.872659176029963e-4
allele num: 5340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.680472977486806e-5
allele num: 29938
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10522
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.487e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

QD
type: SiteQuality
SIO_000300: 5.19e0

MQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

FS
type: SiteQuality
SIO_000300: 1.431e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.4283e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-2

GenotypeDepth
all individuals: 260
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1171
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 379
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1668
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30802
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1326
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17125
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1741
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 446
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 2.231289047558332e-4
allele num: 31372
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.89e-1

FS
type: SiteQuality
SIO_000300: 2.588e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

DP
type: SiteQuality
SIO_000300: 8.6097e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.08e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

QD
type: SiteQuality
SIO_000300: 8.699999999999999e0

GenotypeDepth
all individuals: 17
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1182
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 458
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3972
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 9
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1667
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 680
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30598
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17270
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1673
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4756
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1750
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.284565108094519e-5
allele num: 31824
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.063e1

DP
type: SiteQuality
SIO_000300: 8.66953e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.133e0

FS
type: SiteQuality
SIO_000300: 3.714e0

MQRankSum
type: SiteQuality
SIO_000300: -1.24e-1

GenotypeDepth
all individuals: 260
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1616
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1524
bin: 1.75e1
variant carriers: 6

GenotypeDepth
all individuals: 9
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 458
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1374
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 895
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1645
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30462
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 584
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 357
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1680
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1340
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 17150
bin: 6.25e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1756
num of homozygotes: 0

East Asian
type: Population
allele count: 18
allele frequency: 3.882657463330457e-3
allele num: 4636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5664
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

FS
type: SiteQuality
SIO_000300: 5.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

DP
type: SiteQuality
SIO_000300: 8.70449e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.006e1

GenotypeDepth
all individuals: 35
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4207
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30484
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1619
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1329
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17654
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4954
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4674
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.04228780042592e-5
allele num: 32870
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1796
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.604e-1

FS
type: SiteQuality
SIO_000300: 2.363e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

DP
type: SiteQuality
SIO_000300: 8.76787e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.79e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

GenotypeDepth
all individuals: 15
bin: 8.25e1
variant carriers: 9

GenotypeDepth
all individuals: 71
bin: 9.75e1
variant carriers: 54

GenotypeDepth
all individuals: 265
bin: 4.25e1
variant carriers: 16

GenotypeDepth
all individuals: 12
bin: 9.25e1
variant carriers: 9

GenotypeDepth
all individuals: 146
bin: 4.75e1
variant carriers: 10

GenotypeDepth
all individuals: 15
bin: 7.75e1
variant carriers: 6

GenotypeDepth
all individuals: 1686
bin: 1.75e1
variant carriers: 186

GenotypeDepth
all individuals: 6523
bin: 1.25e1
variant carriers: 194

GenotypeDepth
all individuals: 11
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1659
bin: 6.75e1
variant carriers: 6

GenotypeQuality
all individuals: 16914
bin: 6.25e1
variant carriers: 12

GenotypeQuality
all individuals: 627
bin: 5.25e1
variant carriers: 15

GenotypeQuality
all individuals: 1320
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 174
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 587
bin: 7.75e1
variant carriers: 14

GenotypeQuality
all individuals: 1678
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 668
bin: 3.75e1
variant carriers: 5

GenotypeQuality
all individuals: 299
bin: 4.25e1
variant carriers: 6

GenotypeQuality
all individuals: 1394
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 577
bin: 5.75e1
variant carriers: 18

GenotypeQuality
all individuals: 176
bin: 8.75e1
variant carriers: 19

GenotypeQuality
all individuals: 30347
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 372
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 767
bin: 1.75e1
variant carriers: 7

GenotypeQuality
all individuals: 202
bin: 9.25e1
variant carriers: 15

GenotypeQuality
all individuals: 570
bin: 7.25e1
variant carriers: 8

GenotypeQuality
all individuals: 1522
bin: 9.75e1
variant carriers: 730

GenotypeQuality
all individuals: 378
bin: 8.25e1
variant carriers: 11

GenotypeQuality
all individuals: 435
bin: 4.75e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 4.859972055160683e-4
allele num: 32922
num of homozygotes: 0

African
type: Population
allele count: 761
allele frequency: 1.236594085147871e-1
allele num: 6154
num of homozygotes: 37

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4702
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 8.658008658008658e-3
allele num: 462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1812
num of homozygotes: 0

Latino
type: Population
allele count: 50
allele frequency: 1.002405773857257e-2
allele num: 4988
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 1.468698366073068e-3
allele num: 10894
num of homozygotes: 1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.87131e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.76e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-2

QD
type: SiteQuality
SIO_000300: 1.203e1

VQSLOD
type: SiteQuality
SIO_000300: 6.24e0

GenotypeDepth
all individuals: 39
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 150
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 268
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16161
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1688
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 288
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30905
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1727
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1441
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17440
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1346
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.11864406779661e-4
allele num: 4720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4956
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1816
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

MQ
type: SiteQuality
SIO_000300: 5.671e1

MQRankSum
type: SiteQuality
SIO_000300: -7.79e-1

DP
type: SiteQuality
SIO_000300: 8.76891e5

VQSLOD
type: SiteQuality
SIO_000300: -1.303e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

QD
type: SiteQuality
SIO_000300: 7.13e0

GenotypeDepth
all individuals: 13455
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1200
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 465
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1605
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1515
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31882
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2088
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14421
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 831
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1112
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1752
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5744
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32056
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4706
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

DP
type: SiteQuality
SIO_000300: 8.50515e5

QD
type: SiteQuality
SIO_000300: 1.143e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e0

GenotypeDepth
all individuals: 1200
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8307
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4443
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2142
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 464
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1607
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14273
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2262
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 388
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32510
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 5.656108597285068e-4
allele num: 1768
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5696
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.273e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.504e0

DP
type: SiteQuality
SIO_000300: 8.42001e5

QD
type: SiteQuality
SIO_000300: 5.08e0

MQRankSum
type: SiteQuality
SIO_000300: -6.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.558e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e0

GenotypeDepth
all individuals: 4171
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28721
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2248
bin: 1.75e1
variant carriers: 2

GenotypeDepth
all individuals: 12152
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 464
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1189
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2419
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1576
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13002
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1661
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1581
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32663
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 809
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.386919588682378e-5
allele num: 31314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10672
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.29572e5

QD
type: SiteQuality
SIO_000300: 9.300000000000001e0

FS
type: SiteQuality
SIO_000300: 1.5832e1

MQ
type: SiteQuality
SIO_000300: 5.89e1

MQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.084e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.473e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.97e-1

GenotypeDepth
all individuals: 6
bin: 9.25e1
variant carriers: 3

GenotypeDepth
all individuals: 15
bin: 7.75e1
variant carriers: 4

GenotypeDepth
all individuals: 151
bin: 4.75e1
variant carriers: 4

GenotypeDepth
all individuals: 16
bin: 8.25e1
variant carriers: 8

GenotypeDepth
all individuals: 270
bin: 4.25e1
variant carriers: 5

GenotypeDepth
all individuals: 2271
bin: 1.75e1
variant carriers: 66

GenotypeDepth
all individuals: 7
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 93
bin: 5.25e1
variant carriers: 5

GenotypeDepth
all individuals: 21
bin: 7.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1101
bin: 9.75e1
variant carriers: 256

GenotypeQuality
all individuals: 2498
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 32868
bin: 2.25e1
variant carriers: 5

GenotypeQuality
all individuals: 533
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 551
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 569
bin: 7.75e1
variant carriers: 6

GenotypeQuality
all individuals: 325
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1224
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1555
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 201
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1678
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 527
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 383
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 382
bin: 8.25e1
variant carriers: 10

GenotypeQuality
all individuals: 147
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1540
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 854
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 164
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 12814
bin: 6.25e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 2.671415850400712e-3
allele num: 4492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4352
num of homozygotes: 0

African
type: Population
allele count: 258
allele frequency: 4.529494382022472e-2
allele num: 5696
num of homozygotes: 5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.428801028608164e-5
allele num: 31110
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.366804046459348e-5
allele num: 10676
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.19e1

VQSLOD
type: SiteQuality
SIO_000300: 5.88e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 8.28342e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 28860
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 271
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2331
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11819
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1595
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1744
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2685
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1542
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 890
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1543
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32926
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10638
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.265518803806072e-4
allele num: 4414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1714
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.249496328069149e-5
allele num: 30774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4290
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.866e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.858e0

VQSLOD
type: SiteQuality
SIO_000300: -2.458e-1

DP
type: SiteQuality
SIO_000300: 8.176e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

FS
type: SiteQuality
SIO_000300: 6.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

QD
type: SiteQuality
SIO_000300: 8.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e-1

GenotypeDepth
all individuals: 21
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 150
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2179
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1189
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 271
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1543
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1574
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12103
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1272
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2868
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33557
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.42684766214178e-5
allele num: 10608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4354
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.637e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.06e1

DP
type: SiteQuality
SIO_000300: 8.09951e5

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.386e-1

GenotypeDepth
all individuals: 10379
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1193
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2980
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 470
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1411
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33655
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1602
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11338
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3112
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1517
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 376
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4250
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.829491401390413e-4
allele num: 5466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.328e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.091e0

MQRankSum
type: SiteQuality
SIO_000300: 5.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

FS
type: SiteQuality
SIO_000300: 8.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.143e0

MQ
type: SiteQuality
SIO_000300: 5.937e1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

DP
type: SiteQuality
SIO_000300: 8.02269e5

GenotypeDepth
all individuals: 21
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9872
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3958
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 150
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2191
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3112
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33655
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1411
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1602
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11338
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1517
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.307972213033411e-5
allele num: 30230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4172
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.143e0

MQ
type: SiteQuality
SIO_000300: 5.937e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.091e0

DP
type: SiteQuality
SIO_000300: 8.02269e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.77e-1

FS
type: SiteQuality
SIO_000300: 8.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

MQRankSum
type: SiteQuality
SIO_000300: 5.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

QD
type: SiteQuality
SIO_000300: 1.328e1

GenotypeDepth
all individuals: 3888
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10724
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 150
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1244
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34469
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1511
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 718
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1786
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3810
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10468
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1453
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3994
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.87757909215956e-5
allele num: 29080
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.84489e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.11e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.095e0

VQSLOD
type: SiteQuality
SIO_000300: -9.004e-1

FS
type: SiteQuality
SIO_000300: 5.43e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.82e-1

QD
type: SiteQuality
SIO_000300: 6.63e0

GenotypeDepth
all individuals: 8855
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3889
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1805
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 12
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 471
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1190
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 522
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 256
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4032
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34966
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1450
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 714
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10263
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1772
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3996
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.950236308034473e-5
allele num: 28776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.683e0

DP
type: SiteQuality
SIO_000300: 7.76922e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.14e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.24e-1

QD
type: SiteQuality
SIO_000300: 1.192e1

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 271
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1171
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4509
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9805
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1785
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35476
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1423
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1226
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 682
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3918
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 7.665772326561902e-4
allele num: 5218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28468
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.6174e5

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.886e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.11e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.83e-1

QD
type: SiteQuality
SIO_000300: 9.119999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.895e1

GenotypeDepth
all individuals: 28955
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 27
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 271
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5055
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9156
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1389
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1475
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1788
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35333
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27958
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3716
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.50204e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.029e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.22e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e0

GenotypeDepth
all individuals: 12044
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28664
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8075
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35062
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5990
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1372
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1633
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1840
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4998
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.678363863753403e-5
allele num: 27186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3712
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1420
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.33e-1

QD
type: SiteQuality
SIO_000300: 9.57e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.935e0

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

FS
type: SiteQuality
SIO_000300: 3.274e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.35e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.89e-1

DP
type: SiteQuality
SIO_000300: 7.3094e5

GenotypeDepth
all individuals: 1162
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1485
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7657
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1509
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6565
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1761
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34745
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.737200089692802e-5
allele num: 26758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3564
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.21025e5

QD
type: SiteQuality
SIO_000300: 1.485e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 8.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.135e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.59e0

GenotypeDepth
all individuals: 28012
bin: 7.5e0
variant carriers: 139

GenotypeDepth
all individuals: 22
bin: 7.25e1
variant carriers: 7

GenotypeDepth
all individuals: 150
bin: 4.75e1
variant carriers: 2

GenotypeDepth
all individuals: 12237
bin: 1.25e1
variant carriers: 271

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 6

GenotypeDepth
all individuals: 1155
bin: 3.25e1
variant carriers: 12

GenotypeDepth
all individuals: 14
bin: 8.75e1
variant carriers: 8

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 10

GenotypeQuality
all individuals: 181
bin: 8.75e1
variant carriers: 26

GenotypeQuality
all individuals: 7606
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1778
bin: 2.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1441
bin: 9.75e1
variant carriers: 586

GenotypeQuality
all individuals: 531
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 380
bin: 8.25e1
variant carriers: 21

GenotypeQuality
all individuals: 1355
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 135
bin: 4.75e1
variant carriers: 5

GenotypeQuality
all individuals: 140
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7035
bin: 6.25e1
variant carriers: 11

GenotypeQuality
all individuals: 507
bin: 7.25e1
variant carriers: 10

GenotypeQuality
all individuals: 213
bin: 9.25e1
variant carriers: 20

GenotypeQuality
all individuals: 168
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 451
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33973
bin: 2.25e1
variant carriers: 11

GenotypeQuality
all individuals: 1028
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1337
bin: 6.75e1
variant carriers: 9

GenotypeQuality
all individuals: 528
bin: 7.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1617
bin: 1.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 15
allele frequency: 1.139817629179331e-2
allele num: 1316
num of homozygotes: 0

Latino
type: Population
allele count: 21
allele frequency: 6.072874493927126e-3
allele num: 3458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 512
allele frequency: 1.971050200184786e-2
allele num: 25976
num of homozygotes: 3

African
type: Population
allele count: 8
allele frequency: 1.665278934221482e-3
allele num: 4804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3400
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 1.256281407035176e-2
allele num: 398
num of homozygotes: 0

South Asian
type: Population
allele count: 36
allele frequency: 3.56788899900892e-3
allele num: 10090
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.09728e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.48e-2

QD
type: SiteQuality
SIO_000300: 1.277e1

GenotypeDepth
all individuals: 93
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 477
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7739
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1342
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34298
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1818
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8014
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1379
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1059
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1745
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6976
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 525
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.962143853357243e-5
allele num: 10038
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3374
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.294e-1

FS
type: SiteQuality
SIO_000300: 5.027e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e-1

MQ
type: SiteQuality
SIO_000300: 5.89e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.64e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.46e-1

QD
type: SiteQuality
SIO_000300: 1.06e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 6.98912e5

GenotypeDepth
all individuals: 277
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1156
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8238
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 93
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6705
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33809
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1782
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1754
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1336
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8578
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3278
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.143163309044149e-4
allele num: 4666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.040077569489334e-5
allele num: 24752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.041362530413625e-4
allele num: 3288
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.00341159943809e-4
allele num: 9966
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.9e1

VQSLOD
type: SiteQuality
SIO_000300: -2.624e-1

QD
type: SiteQuality
SIO_000300: 1.375e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.94e-1

DP
type: SiteQuality
SIO_000300: 6.91501e5

MQRankSum
type: SiteQuality
SIO_000300: -5.83e-1

FS
type: SiteQuality
SIO_000300: 8.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

GenotypeDepth
all individuals: 4498
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30652
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5737
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1678
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1745
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 875
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1843
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12434
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 6.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2918
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1082
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.471871925588051e-5
allele num: 22362
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.932e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.35e-2

DP
type: SiteQuality
SIO_000300: 6.48558e5

MQRankSum
type: SiteQuality
SIO_000300: 1.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

VQSLOD
type: SiteQuality
SIO_000300: -1.894e0

QD
type: SiteQuality
SIO_000300: 1.883e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

GenotypeDepth
all individuals: 472
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4140
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2869
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 93
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 494
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2549
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1496
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15465
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 5212
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2329
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 26658
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 9.25e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 3.022974607013301e-4
allele num: 19848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 910
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9388
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2510
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.18e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.93e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.159e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.359e0

DP
type: SiteQuality
SIO_000300: 6.18636e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.67e-1

GenotypeDepth
all individuals: 9007
bin: 1.25e1
variant carriers: 4

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2782
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 18
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2348
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2725
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 100
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1007
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24874
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17372
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1415
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 516
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 889
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 5047
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2336
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 5.025125628140704e-4
allele num: 3980
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 9.752925877763329e-4
allele num: 9228
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 4.793863854266539e-4
allele num: 2086
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18502
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 1.421e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

FS
type: SiteQuality
SIO_000300: 5.736e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-2

DP
type: SiteQuality
SIO_000300: 5.99825e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

GenotypeDepth
all individuals: 278
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1135
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 902
bin: 1.75e1
variant carriers: 2

GenotypeDepth
all individuals: 476
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2741
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23027
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18283
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3070
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2866
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1372
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 998
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1233
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4870
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 494
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1920
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 7.739938080495357e-4
allele num: 3876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17786
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.89765e5

MQRankSum
type: SiteQuality
SIO_000300: -6.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

QD
type: SiteQuality
SIO_000300: 8.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.002e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 24
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2866
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 998
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1372
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18283
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23027
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3070
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 494
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1233
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4870
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1920
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

DP
type: SiteQuality
SIO_000300: 5.89765e5

MQRankSum
type: SiteQuality
SIO_000300: -6.38e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.002e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

QD
type: SiteQuality
SIO_000300: 8.32e0

GenotypeDepth
all individuals: 1131
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 93
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3882
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 153
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18381
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23490
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3048
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2530
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4971
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1928
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.12145340361108e-4
allele num: 17834
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9134
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.539e0

VQSLOD
type: SiteQuality
SIO_000300: 7.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.31e-2

MQ
type: SiteQuality
SIO_000300: 6.077e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.749e0

QD
type: SiteQuality
SIO_000300: 1.464e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.98e-1

DP
type: SiteQuality
SIO_000300: 5.88921e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

GenotypeDepth
all individuals: 2661
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 474
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1134
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3658
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 18869
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 20629
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4435
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4046
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1250
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 407
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 996
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 137
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1197
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.672897196261682e-3
allele num: 642
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.119319453772107e-4
allele num: 8934
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.291682395872656e-5
allele num: 15894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3648
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.308e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.89e-1

QD
type: SiteQuality
SIO_000300: 1.301e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.53e-1

DP
type: SiteQuality
SIO_000300: 5.63471e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.73e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 94
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 153
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 278
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4363
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 506
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22563
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16675
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4822
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1465
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1292
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.743e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 1.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.46e-2

DP
type: SiteQuality
SIO_000300: 5.38684e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.111e1

GenotypeDepth
all individuals: 18
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 153
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2556
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 278
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 473
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5092
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22888
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1098
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4245
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1656
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15694
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3148
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.335680751173709e-5
allele num: 13632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1484
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.21e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 1.038e1

VQSLOD
type: SiteQuality
SIO_000300: -2.082e0

MQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.33335e5

MQ
type: SiteQuality
SIO_000300: 5.805e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.79e-1

GenotypeDepth
all individuals: 27
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 94
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 153
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4457
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11336
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2296
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23452
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1083
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6644
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3685
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 156
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.592356687898089e-4
allele num: 12560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 994
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3180
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.114e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.41e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 1.148e1

FS
type: SiteQuality
SIO_000300: 5.79e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.38e0

VQSLOD
type: SiteQuality
SIO_000300: 6.62e-1

MQ
type: SiteQuality
SIO_000300: 4.877e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 22962
bin: 2.5e0
variant carriers: 1

GenotypeDepth
all individuals: 1457
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1047
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2253
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3536
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22491
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 333
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1054
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 960
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 304
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 8274
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 504
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6191
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7419
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2999
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 6.662225183211193e-4
allele num: 3002
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

DP
type: SiteQuality
SIO_000300: 5.01909e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.75e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.66e-1

QD
type: SiteQuality
SIO_000300: 1.395e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

GenotypeDepth
all individuals: 10
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 277
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4485
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7684
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21495
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6687
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7505
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 551
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 996
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.206563706563707e-4
allele num: 8288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10964
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.01597e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.93e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.719e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

QD
type: SiteQuality
SIO_000300: 8.800000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 5.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.379e0

GenotypeDepth
all individuals: 2386
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1434
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4721
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7507
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1004
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2338
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21148
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 6245
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8243
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2912
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 994
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.93e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.73e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.03335e5

QD
type: SiteQuality
SIO_000300: 1.328e1

GenotypeQuality
all individuals: 98
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2370
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38897
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2635
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9176
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 9.877518767285657e-5
allele num: 10124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.48e0

MQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 6.022e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.589971e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.36e-1

QD
type: SiteQuality
SIO_000300: 1.662e1

GenotypeQuality
all individuals: 2370
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2635
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9176
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38897
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.103515625e-5
allele num: 16384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

QD
type: SiteQuality
SIO_000300: 1.662e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

DP
type: SiteQuality
SIO_000300: 1.589971e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 6.022e1

VQSLOD
type: SiteQuality
SIO_000300: 5.48e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-2

GenotypeQuality
all individuals: 64
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 737
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9186
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2636
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38987
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521838380763963e-5
allele num: 65710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

DP
type: SiteQuality
SIO_000300: 1.590353e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.181e1

MQRankSum
type: SiteQuality
SIO_000300: 7.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.9e-1

GenotypeQuality
all individuals: 721
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2342
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 496
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39585
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2636
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 984
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9202
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.881422924901186e-5
allele num: 10120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.59184e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
type: SiteQuality
SIO_000300: 1.627e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.743e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.254e0

GenotypeQuality
all individuals: 2335
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2627
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39838
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9183
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 118
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.093845216331505e-5
allele num: 16410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65734
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.07e-1

DP
type: SiteQuality
SIO_000300: 1.59332e6

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

FS
type: SiteQuality
SIO_000300: 1.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.151e1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.629e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-2

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41658
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2643
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2309
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9309
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 9.75e1
variant carriers: 67

GenotypeQuality
all individuals: 133
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.671522719389525e-5
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518372304889159e-5
allele num: 65860
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

South Asian
type: Population
allele count: 65
allele frequency: 3.947048821957736e-3
allele num: 16468
num of homozygotes: 1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.57e0

FS
type: SiteQuality
SIO_000300: 6.77e-1

DP
type: SiteQuality
SIO_000300: 1.612158e6

QD
type: SiteQuality
SIO_000300: 1.286e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.821e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

GenotypeQuality
all individuals: 665
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2653
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9346
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2319
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41966
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.551385138210395e-5
allele num: 65914
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.77e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 7.194e0

QD
type: SiteQuality
SIO_000300: 1.06e1

DP
type: SiteQuality
SIO_000300: 1.61346e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.46e-1

GenotypeQuality
all individuals: 649
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9363
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 295
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2665
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2318
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42130
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65974
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.823182711198428e-5
allele num: 10180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

FS
type: SiteQuality
SIO_000300: 7.72e-1

QD
type: SiteQuality
SIO_000300: 1.497e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.615814e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.01e0

MQRankSum
type: SiteQuality
SIO_000300: -5.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.434e0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2318
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9365
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2664
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42214
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515564851019975e-5
allele num: 65982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.111e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.19e0

VQSLOD
type: SiteQuality
SIO_000300: 3.64e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.616487e6

QD
type: SiteQuality
SIO_000300: 1.128e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

GenotypeQuality
all individuals: 967
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42350
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2663
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2331
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9376
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514600751241973e-5
allele num: 66024
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.618026e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

QD
type: SiteQuality
SIO_000300: 1.346e1

VQSLOD
type: SiteQuality
SIO_000300: -1.421e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.386e0

FS
type: SiteQuality
SIO_000300: 9.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.638e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.482e0

GenotypeDepth
all individuals: 26
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42448
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 546
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9399
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2676
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2322
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.080452811913555e-5
allele num: 66076
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

DP
type: SiteQuality
SIO_000300: 1.621266e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

FS
type: SiteQuality
SIO_000300: 5.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

VQSLOD
type: SiteQuality
SIO_000300: 9.99e-1

QD
type: SiteQuality
SIO_000300: 1.025e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

GenotypeQuality
all individuals: 519
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2681
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42708
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9434
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2324
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 237
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 966
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.516070345664039e-4
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66096
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.6e-1

QD
type: SiteQuality
SIO_000300: 1.719e1

DP
type: SiteQuality
SIO_000300: 1.622356e6

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2325
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 452
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42960
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9459
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2682
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.533502584096473e-5
allele num: 66174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.818402230573403e-4
allele num: 16498
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.476e0

QD
type: SiteQuality
SIO_000300: 1.181e1

DP
type: SiteQuality
SIO_000300: 1.625477e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.455e0

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

MQRankSum
type: SiteQuality
SIO_000300: 1.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.870000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2683
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2329
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43058
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9478
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.629999999999999e-1

FS
type: SiteQuality
SIO_000300: 2.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

VQSLOD
type: SiteQuality
SIO_000300: 1.9e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

DP
type: SiteQuality
SIO_000300: 1.62622e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-3

QD
type: SiteQuality
SIO_000300: 1.279e1

GenotypeQuality
all individuals: 2329
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43058
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9478
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2683
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e0

MQRankSum
type: SiteQuality
SIO_000300: -5.629999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

FS
type: SiteQuality
SIO_000300: 2.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

QD
type: SiteQuality
SIO_000300: 1.279e1

MQ
type: SiteQuality
SIO_000300: 5.95e1

DP
type: SiteQuality
SIO_000300: 1.62622e6

VQSLOD
type: SiteQuality
SIO_000300: 1.9e-1

GenotypeQuality
all individuals: 67
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9489
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2337
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2689
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43150
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.018685664261781e-5
allele num: 66254
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.319e0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.347e1

MQ
type: SiteQuality
SIO_000300: 5.964e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.04e-1

FS
type: SiteQuality
SIO_000300: 4.641e0

DP
type: SiteQuality
SIO_000300: 1.627208e6

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2344
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9504
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43256
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2695
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66326
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

FS
type: SiteQuality
SIO_000300: 4.893e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

VQSLOD
type: SiteQuality
SIO_000300: -2.61e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.628901e6

QD
type: SiteQuality
SIO_000300: 8.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.47e-1

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9503
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2697
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2342
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 43288
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.89e1

QD
type: SiteQuality
SIO_000300: 8.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.907e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

FS
type: SiteQuality
SIO_000300: 2.68e0

MQRankSum
type: SiteQuality
SIO_000300: -8.92e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.337e0

DP
type: SiteQuality
SIO_000300: 1.629578e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.48e-1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2709
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43416
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2346
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 297
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9508
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.678668215253581e-5
allele num: 10332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.054280378336044e-4
allele num: 66396
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.14e-1

DP
type: SiteQuality
SIO_000300: 1.631718e6

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.64e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

MQRankSum
type: SiteQuality
SIO_000300: 9.25e-1

QD
type: SiteQuality
SIO_000300: 1.095e1