22-38014497-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38014497
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38014497
    reference: chr 22
allele count: 1
allele frequency: 8.415808254224735e-6
allele num: 118824
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.28G>T
  hgvsp: ENSP00000416153.1:p.Asp10Tyr
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.247G>T
  hgvsp: ENSP00000321288.8:p.Asp83Tyr
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.28G>T
  hgvsp: ENSP00000403534.1:p.Asp10Tyr
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.28G>T
  hgvsp: ENSP00000400159.1:p.Asp10Tyr
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.247G>T
  hgvsp: ENSP00000341344.4:p.Asp83Tyr
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.298G>T
  hgvsp: ENSP00000371175.5:p.Asp100Tyr
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000395901
  ensembl transcript: ENST00000431745
  gene symbol: GGA1
  hgvsc: ENST00000431745.1:c.28G>T
  hgvsp: ENSP00000395901.1:p.Asp10Tyr
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.88G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.28G>T
  hgvsp: ENSP00000402930.1:p.Asp10Tyr
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.28G>T
  hgvsp: ENSP00000411373.1:p.Asp10Tyr
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.28G>T
  hgvsp: ENSP00000385287.1:p.Asp10Tyr
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.28G>T
  hgvsp: ENSP00000404453.1:p.Asp10Tyr
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411727
  ensembl transcript: ENST00000447515
  gene symbol: GGA1
  hgvsc: ENST00000447515.1:c.28G>T
  hgvsp: ENSP00000411727.1:p.Asp10Tyr
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.247G>T
  hgvsp: ENSP00000384030.3:p.Asp83Tyr
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.28G>T
  hgvsp: ENSP00000414413.1:p.Asp10Tyr
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.223G>T
  hgvsp: ENSP00000390416.1:p.Asp75Tyr
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.204+1493G>T
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38980
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp83Tyr
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

22-38014498-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38014498
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38014498
    reference: chr 22
allele count: 1
allele frequency: 8.411136344520145e-6
allele num: 118890
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.29A>T
  hgvsp: ENSP00000416153.1:p.Asp10Val
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.29A>T
  hgvsp: ENSP00000400159.1:p.Asp10Val
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.248A>T
  hgvsp: ENSP00000341344.4:p.Asp83Val
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.248A>T
  hgvsp: ENSP00000384030.3:p.Asp83Val
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.29A>T
  hgvsp: ENSP00000402930.1:p.Asp10Val
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000395901
  ensembl transcript: ENST00000431745
  gene symbol: GGA1
  hgvsc: ENST00000431745.1:c.29A>T
  hgvsp: ENSP00000395901.1:p.Asp10Val
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.248A>T
  hgvsp: ENSP00000321288.8:p.Asp83Val
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.29A>T
  hgvsp: ENSP00000385287.1:p.Asp10Val
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.89A>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.204+1494A>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.29A>T
  hgvsp: ENSP00000414413.1:p.Asp10Val
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.29A>T
  hgvsp: ENSP00000404453.1:p.Asp10Val
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.224A>T
  hgvsp: ENSP00000390416.1:p.Asp75Val
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.29A>T
  hgvsp: ENSP00000403534.1:p.Asp10Val
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.299A>T
  hgvsp: ENSP00000371175.5:p.Asp100Val
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411727
  ensembl transcript: ENST00000447515
  gene symbol: GGA1
  hgvsc: ENST00000447515.1:c.29A>T
  hgvsp: ENSP00000411727.1:p.Asp10Val
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.29A>T
  hgvsp: ENSP00000411373.1:p.Asp10Val
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39073
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp83Val
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

22-38014499-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38014499
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38014499
    reference: chr 22
allele count: 3
allele frequency: 2.522874058127018e-5
allele num: 118912
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.30C>T
  hgvsp: ENST00000453208.1:c.30C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.249C>T
  hgvsp: ENST00000325180.8:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.30C>T
  hgvsp: ENST00000413251.1:c.30C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.225C>T
  hgvsp: ENST00000449944.1:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.30C>T
  hgvsp: ENST00000411501.1:c.30C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.249C>T
  hgvsp: ENST00000405147.3:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.300C>T
  hgvsp: ENST00000381756.5:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000395901
  ensembl transcript: ENST00000431745
  gene symbol: GGA1
  hgvsc: ENST00000431745.1:c.30C>T
  hgvsp: ENST00000431745.1:c.30C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.30C>T
  hgvsp: ENST00000423024.1:c.30C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411727
  ensembl transcript: ENST00000447515
  gene symbol: GGA1
  hgvsc: ENST00000447515.1:c.30C>T
  hgvsp: ENST00000447515.1:c.30C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.30C>T
  hgvsp: ENST00000429218.1:c.30C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.30C>T
  hgvsp: ENST00000439161.1:c.30C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.30C>T
  hgvsp: ENST00000406772.1:c.30C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.30C>T
  hgvsp: ENST00000326597.2:c.30C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.204+1495C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.90C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.249C>T
  hgvsp: ENST00000343632.4:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp83Asp
num of homozygotes: 1
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

22-38014500-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38014500
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38014500
    reference: chr 22
allele count: 3
allele frequency: 2.522237729313447e-5
allele num: 118942
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.31G>A
  hgvsp: ENSP00000385287.1:p.Glu11Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000395901
  ensembl transcript: ENST00000431745
  gene symbol: GGA1
  hgvsc: ENST00000431745.1:c.31G>A
  hgvsp: ENSP00000395901.1:p.Glu11Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.250G>A
  hgvsp: ENSP00000321288.8:p.Glu84Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411727
  ensembl transcript: ENST00000447515
  gene symbol: GGA1
  hgvsc: ENST00000447515.1:c.31G>A
  hgvsp: ENSP00000411727.1:p.Glu11Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.31G>A
  hgvsp: ENSP00000402930.1:p.Glu11Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.91G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.31G>A
  hgvsp: ENSP00000403534.1:p.Glu11Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.31G>A
  hgvsp: ENSP00000404453.1:p.Glu11Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.31G>A
  hgvsp: ENSP00000411373.1:p.Glu11Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.31G>A
  hgvsp: ENSP00000416153.1:p.Glu11Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.250G>A
  hgvsp: ENSP00000341344.4:p.Glu84Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.226G>A
  hgvsp: ENSP00000390416.1:p.Glu76Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.31G>A
  hgvsp: ENSP00000400159.1:p.Glu11Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.204+1496G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.301G>A
  hgvsp: ENSP00000371175.5:p.Glu101Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.31G>A
  hgvsp: ENSP00000414413.1:p.Glu11Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.250G>A
  hgvsp: ENSP00000384030.3:p.Glu84Lys
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu84Lys
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

22-38014503-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38014503
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38014503
    reference: chr 22
allele count: 1
allele frequency: 8.403926314374075e-6
allele num: 118992
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.253G>A
  hgvsp: ENSP00000341344.4:p.Val85Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000395901
  ensembl transcript: ENST00000431745
  gene symbol: GGA1
  hgvsc: ENST00000431745.1:c.34G>A
  hgvsp: ENSP00000395901.1:p.Val12Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.34G>A
  hgvsp: ENSP00000411373.1:p.Val12Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.204+1499G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.253G>A
  hgvsp: ENSP00000384030.3:p.Val85Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.34G>A
  hgvsp: ENSP00000403534.1:p.Val12Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411727
  ensembl transcript: ENST00000447515
  gene symbol: GGA1
  hgvsc: ENST00000447515.1:c.34G>A
  hgvsp: ENSP00000411727.1:p.Val12Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.304G>A
  hgvsp: ENSP00000371175.5:p.Val102Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.34G>A
  hgvsp: ENSP00000402930.1:p.Val12Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.253G>A
  hgvsp: ENSP00000321288.8:p.Val85Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.34G>A
  hgvsp: ENSP00000404453.1:p.Val12Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.34G>A
  hgvsp: ENSP00000385287.1:p.Val12Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.34G>A
  hgvsp: ENSP00000414413.1:p.Val12Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.34G>A
  hgvsp: ENSP00000416153.1:p.Val12Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.229G>A
  hgvsp: ENSP00000390416.1:p.Val77Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.94G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.34G>A
  hgvsp: ENSP00000400159.1:p.Val12Met
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val85Met
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD

22-38014515-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38014515
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38014515
    reference: chr 22
allele count: 1
allele frequency: 8.405056481979558e-6
allele num: 118976
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.265C>G
  hgvsp: ENSP00000384030.3:p.Arg89Gly
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.265C>G
  hgvsp: ENSP00000341344.4:p.Arg89Gly
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.204+1511C>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.241C>G
  hgvsp: ENSP00000390416.1:p.Arg81Gly
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.316C>G
  hgvsp: ENSP00000371175.5:p.Arg106Gly
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.46C>G
  hgvsp: ENSP00000404453.1:p.Arg16Gly
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.106C>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.46C>G
  hgvsp: ENSP00000385287.1:p.Arg16Gly
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.46C>G
  hgvsp: ENSP00000400159.1:p.Arg16Gly
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.46C>G
  hgvsp: ENSP00000414413.1:p.Arg16Gly
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000395901
  ensembl transcript: ENST00000431745
  gene symbol: GGA1
  hgvsc: ENST00000431745.1:c.46C>G
  hgvsp: ENSP00000395901.1:p.Arg16Gly
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.46C>G
  hgvsp: ENSP00000416153.1:p.Arg16Gly
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.46C>G
  hgvsp: ENSP00000411373.1:p.Arg16Gly
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.265C>G
  hgvsp: ENSP00000321288.8:p.Arg89Gly
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411727
  ensembl transcript: ENST00000447515
  gene symbol: GGA1
  hgvsc: ENST00000447515.1:c.46C>G
  hgvsp: ENSP00000411727.1:p.Arg16Gly
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.46C>G
  hgvsp: ENSP00000403534.1:p.Arg16Gly
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.46C>G
  hgvsp: ENSP00000402930.1:p.Arg16Gly
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg89Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

22-38014515-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38014515
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38014515
    reference: chr 22
allele count: 1
allele frequency: 8.405056481979558e-6
allele num: 118976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.46C>T
  hgvsp: ENSP00000400159.1:p.Arg16Cys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.265C>T
  hgvsp: ENSP00000321288.8:p.Arg89Cys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.241C>T
  hgvsp: ENSP00000390416.1:p.Arg81Cys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.106C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.265C>T
  hgvsp: ENSP00000384030.3:p.Arg89Cys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.46C>T
  hgvsp: ENSP00000404453.1:p.Arg16Cys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.204+1511C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000395901
  ensembl transcript: ENST00000431745
  gene symbol: GGA1
  hgvsc: ENST00000431745.1:c.46C>T
  hgvsp: ENSP00000395901.1:p.Arg16Cys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.265C>T
  hgvsp: ENSP00000341344.4:p.Arg89Cys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.46C>T
  hgvsp: ENSP00000385287.1:p.Arg16Cys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.46C>T
  hgvsp: ENSP00000416153.1:p.Arg16Cys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411727
  ensembl transcript: ENST00000447515
  gene symbol: GGA1
  hgvsc: ENST00000447515.1:c.46C>T
  hgvsp: ENSP00000411727.1:p.Arg16Cys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.46C>T
  hgvsp: ENSP00000414413.1:p.Arg16Cys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.316C>T
  hgvsp: ENSP00000371175.5:p.Arg106Cys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.46C>T
  hgvsp: ENSP00000411373.1:p.Arg16Cys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.46C>T
  hgvsp: ENSP00000402930.1:p.Arg16Cys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.46C>T
  hgvsp: ENSP00000403534.1:p.Arg16Cys
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg89Cys
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

22-38014525-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38014525
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38014525
    reference: chr 22
allele count: 1
allele frequency: 8.415524960447032e-6
allele num: 118828
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.275A>T
  hgvsp: ENSP00000341344.4:p.Asn92Ile
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.116A>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.56A>T
  hgvsp: ENSP00000400159.1:p.Asn19Ile
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.56A>T
  hgvsp: ENSP00000414413.1:p.Asn19Ile
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.275A>T
  hgvsp: ENSP00000384030.3:p.Asn92Ile
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.56A>T
  hgvsp: ENSP00000402930.1:p.Asn19Ile
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.275A>T
  hgvsp: ENSP00000321288.8:p.Asn92Ile
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.326A>T
  hgvsp: ENSP00000371175.5:p.Asn109Ile
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.56A>T
  hgvsp: ENSP00000403534.1:p.Asn19Ile
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411727
  ensembl transcript: ENST00000447515
  gene symbol: GGA1
  hgvsc: ENST00000447515.1:c.56A>T
  hgvsp: ENSP00000411727.1:p.Asn19Ile
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.56A>T
  hgvsp: ENSP00000404453.1:p.Asn19Ile
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.56A>T
  hgvsp: ENSP00000416153.1:p.Asn19Ile
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.56A>T
  hgvsp: ENSP00000411373.1:p.Asn19Ile
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.204+1521A>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.56A>T
  hgvsp: ENSP00000385287.1:p.Asn19Ile
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.251A>T
  hgvsp: ENSP00000390416.1:p.Asn84Ile
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn92Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

22-38014526-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38014526
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38014526
    reference: chr 22
allele count: 8
allele frequency: 6.734233475874608e-5
allele num: 118796
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.57C>T
  hgvsp: ENST00000411501.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411727
  ensembl transcript: ENST00000447515
  gene symbol: GGA1
  hgvsc: ENST00000447515.1:c.57C>T
  hgvsp: ENST00000447515.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.276C>T
  hgvsp: ENST00000325180.8:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.57C>T
  hgvsp: ENST00000453208.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.57C>T
  hgvsp: ENST00000429218.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.327C>T
  hgvsp: ENST00000381756.5:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.57C>T
  hgvsp: ENST00000406772.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.276C>T
  hgvsp: ENST00000405147.3:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.252C>T
  hgvsp: ENST00000449944.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.57C>T
  hgvsp: ENST00000326597.2:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.57C>T
  hgvsp: ENST00000423024.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.57C>T
  hgvsp: ENST00000413251.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.57C>T
  hgvsp: ENST00000439161.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.117C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.204+1522C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.276C>T
  hgvsp: ENST00000343632.4:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn92Asn
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

22-38014527-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38014527
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38014527
    reference: chr 22
allele count: 2
allele frequency: 1.684210526315789e-5
allele num: 118750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.58G>A
  hgvsp: ENSP00000416153.1:p.Glu20Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.277G>A
  hgvsp: ENSP00000321288.8:p.Glu93Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.58G>A
  hgvsp: ENSP00000400159.1:p.Glu20Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.58G>A
  hgvsp: ENSP00000385287.1:p.Glu20Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.58G>A
  hgvsp: ENSP00000411373.1:p.Glu20Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.277G>A
  hgvsp: ENSP00000341344.4:p.Glu93Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.58G>A
  hgvsp: ENSP00000414413.1:p.Glu20Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.58G>A
  hgvsp: ENSP00000403534.1:p.Glu20Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.253G>A
  hgvsp: ENSP00000390416.1:p.Glu85Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.328G>A
  hgvsp: ENSP00000371175.5:p.Glu110Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.118G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.58G>A
  hgvsp: ENSP00000402930.1:p.Glu20Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411727
  ensembl transcript: ENST00000447515
  gene symbol: GGA1
  hgvsc: ENST00000447515.1:c.58G>A
  hgvsp: ENSP00000411727.1:p.Glu20Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.58G>A
  hgvsp: ENSP00000404453.1:p.Glu20Lys
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.204+1523G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.277G>A
  hgvsp: ENSP00000384030.3:p.Glu93Lys
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu93Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

22-38014542-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38014542
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38014542
    reference: chr 22
allele count: 3
allele frequency: 2.541123854376662e-5
allele num: 118058
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.292G>A
  hgvsp: ENSP00000341344.4:p.Val98Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.73G>A
  hgvsp: ENSP00000403534.1:p.Val25Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.73G>A
  hgvsp: ENSP00000416153.1:p.Val25Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.204+1538G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.292G>A
  hgvsp: ENSP00000321288.8:p.Val98Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.292G>A
  hgvsp: ENSP00000384030.3:p.Val98Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.73G>A
  hgvsp: ENSP00000414413.1:p.Val25Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.133G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411727
  ensembl transcript: ENST00000447515
  gene symbol: GGA1
  hgvsc: ENST00000447515.1:c.73G>A
  hgvsp: ENSP00000411727.1:p.Val25Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.268G>A
  hgvsp: ENSP00000390416.1:p.Val90Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.73G>A
  hgvsp: ENSP00000385287.1:p.Val25Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.73G>A
  hgvsp: ENSP00000400159.1:p.Val25Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.73G>A
  hgvsp: ENSP00000402930.1:p.Val25Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.343G>A
  hgvsp: ENSP00000371175.5:p.Val115Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.73G>A
  hgvsp: ENSP00000411373.1:p.Val25Met
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.73G>A
  hgvsp: ENSP00000404453.1:p.Val25Met
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val98Met
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

22-38014542-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38014542
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38014542
    reference: chr 22
allele count: 1
allele frequency: 8.470412847922207e-6
allele num: 118058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.292G>T
  hgvsp: ENSP00000321288.8:p.Val98Leu
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.292G>T
  hgvsp: ENSP00000341344.4:p.Val98Leu
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.73G>T
  hgvsp: ENSP00000400159.1:p.Val25Leu
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.268G>T
  hgvsp: ENSP00000390416.1:p.Val90Leu
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.73G>T
  hgvsp: ENSP00000411373.1:p.Val25Leu
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.73G>T
  hgvsp: ENSP00000416153.1:p.Val25Leu
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.73G>T
  hgvsp: ENSP00000404453.1:p.Val25Leu
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.133G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.73G>T
  hgvsp: ENSP00000385287.1:p.Val25Leu
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.343G>T
  hgvsp: ENSP00000371175.5:p.Val115Leu
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.204+1538G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.73G>T
  hgvsp: ENSP00000402930.1:p.Val25Leu
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.73G>T
  hgvsp: ENSP00000414413.1:p.Val25Leu
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.292G>T
  hgvsp: ENSP00000384030.3:p.Val98Leu
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411727
  ensembl transcript: ENST00000447515
  gene symbol: GGA1
  hgvsc: ENST00000447515.1:c.73G>T
  hgvsp: ENSP00000411727.1:p.Val25Leu
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.73G>T
  hgvsp: ENSP00000403534.1:p.Val25Leu
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val98Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/22-38014550-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38014550
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38014550
    reference: chr 22
allele count: 1
allele frequency: 8.514116404999489e-6
allele num: 117452
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411727
  ensembl transcript: ENST00000447515
  gene symbol: GGA1
  hgvsc: ENST00000447515.1:c.81C>A
  hgvsp: ENST00000447515.1:c.81C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.351C>A
  hgvsp: ENST00000381756.5:c.351C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.81C>A
  hgvsp: ENST00000406772.1:c.81C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.81C>A
  hgvsp: ENST00000411501.1:c.81C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.81C>A
  hgvsp: ENST00000439161.1:c.81C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.81C>A
  hgvsp: ENST00000453208.1:c.81C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.204+1546C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.276C>A
  hgvsp: ENST00000449944.1:c.276C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.300C>A
  hgvsp: ENST00000325180.8:c.300C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.141C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.81C>A
  hgvsp: ENST00000413251.1:c.81C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.300C>A
  hgvsp: ENST00000405147.3:c.300C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.81C>A
  hgvsp: ENST00000429218.1:c.81C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.81C>A
  hgvsp: ENST00000423024.1:c.81C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.300C>A
  hgvsp: ENST00000343632.4:c.300C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.81C>A
  hgvsp: ENST00000326597.2:c.81C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13810
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro100Pro
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ

22-38014563-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38014563
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38014563
    reference: chr 22
allele count: 1
allele frequency: 8.61000137760022e-6
allele num: 116144
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.303+10C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.303+10C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.84+10C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.84+10C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.84+10C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.84+10C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.144+10C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.84+10C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.279+10C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.84+10C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.84+10C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.354+10C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.303+10C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.204+1559C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.84+10C>T
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13313
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum

22-38014567-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38014567
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38014567
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 115556
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.84+14G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.84+14G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.84+14G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.279+14G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.303+14G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.84+14G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.84+14G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.204+1563G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.303+14G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.84+14G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.354+14G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.84+14G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.303+14G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.144+14G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.84+14G>T
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

22-38014573-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38014573
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38014573
    reference: chr 22
allele count: 2
allele frequency: 1.743557554834885e-5
allele num: 114708
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.279+20G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.84+20G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.84+20G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.144+20G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.84+20G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.84+20G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.303+20G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.303+20G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.84+20G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.84+20G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.303+20G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.84+20G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.84+20G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.204+1569G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.354+20G>T
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11760
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

22-38014583-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38014583
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38014583
    reference: chr 22
allele count: 4
allele frequency: 3.522491105709958e-5
allele num: 113556
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.84+30G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.84+30G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.279+30G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.84+30G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.303+30G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.84+30G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.144+30G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.84+30G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.84+30G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.303+30G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.354+30G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.84+30G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.84+30G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.303+30G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.204+1579G>A
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7888
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

22-38014584-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38014584
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38014584
    reference: chr 22
allele count: 4
allele frequency: 3.529017345120251e-5
allele num: 113346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.84+31C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.84+31C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.84+31C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.84+31C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.84+31C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.303+31C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.84+31C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.84+31C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.204+1580C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.279+31C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.303+31C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.303+31C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.84+31C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.354+31C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.144+31C>T
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15652
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8483
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

22-38014587-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38014587
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38014587
    reference: chr 22
allele count: 1
allele frequency: 8.85896527285613e-6
allele num: 112880
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.84+34T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.144+34T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.84+34T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.84+34T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.84+34T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.84+34T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.303+34T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.303+34T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.84+34T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.279+34T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.303+34T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.84+34T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.84+34T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.204+1583T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.354+34T>C
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16517
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

22-38014590-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38014590
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38014590
    reference: chr 22
allele count: 2
allele frequency: 1.785650512481697e-5
allele num: 112004
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.303+37C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.84+37C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.84+37C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.84+37C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.303+37C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.84+37C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.84+37C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.144+37C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.84+37C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.84+37C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.303+37C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.354+37C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.84+37C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.204+1586C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.279+37C>T
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14187
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

22-38014591-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38014591
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38014591
    reference: chr 22
allele count: 6
allele frequency: 5.394034198176816e-5
allele num: 111234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.303+38G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.84+38G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.279+38G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.144+38G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.84+38G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.84+38G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.354+38G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.84+38G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.303+38G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.84+38G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.84+38G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.204+1587G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.84+38G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.303+38G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.84+38G>A
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6779
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16646
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12180
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

22-38014592-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38014592
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38014592
    reference: chr 22
allele count: 1
allele frequency: 9.017457798297504e-6
allele num: 110896
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.303+39G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.84+39G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.84+39G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.84+39G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.144+39G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.279+39G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.303+39G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.204+1588G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.84+39G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.84+39G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.84+39G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.303+39G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.84+39G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.84+39G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.354+39G>A
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

22-38014600-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38014600
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38014600
    reference: chr 22
allele count: 1
allele frequency: 9.317580410718945e-6
allele num: 107324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.84+47G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.279+47G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.303+47G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.84+47G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.84+47G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.84+47G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.354+47G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.84+47G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.204+1596G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.303+47G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.84+47G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.144+47G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.303+47G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.84+47G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.84+47G>A
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5726
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

22-38015762-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015762
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015762
    reference: chr 22
allele count: 1
allele frequency: 9.5906701960333e-6
allele num: 104268
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-483G>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-483G>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-483G>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-483G>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.145-45G>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-483G>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-483G>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-483G>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.304-45G>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-483G>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-483G>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-483G>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-483G>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-483G>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-483G>C
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11063
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4994
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/22-38015763-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015763
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015763
    reference: chr 22
allele count: 1
allele frequency: 9.583501044601614e-6
allele num: 104346
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-482A>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-482A>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-482A>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-482A>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.145-44A>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-482A>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-482A>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-482A>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-482A>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-482A>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-482A>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-482A>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-482A>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-482A>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.304-44A>C
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8275
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10993
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

22-38015765-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015765
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015765
    reference: chr 22
allele count: 1
allele frequency: 9.596744784169209e-6
allele num: 104202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.145-42C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-480C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-480C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-480C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.304-42C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-480C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-480C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-480C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-480C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-480C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-480C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-480C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-480C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-480C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-480C>T
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11062
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5014
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10279
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD

22-38015772-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015772
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015772
    reference: chr 22
allele count: 1
allele frequency: 9.593430418849172e-6
allele num: 104238
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-473A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-473A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-473A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-473A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-473A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-473A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-473A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-473A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.304-35A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-473A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.145-35A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-473A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-473A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-473A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-473A>G
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10917
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5086
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

22-38015778-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015778
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015778
    reference: chr 22
allele count: 2
allele frequency: 1.923483813883706e-5
allele num: 103978
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-467C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-467C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-467C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-467C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-467C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-467C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-467C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-467C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-467C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.304-29C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-467C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.145-29C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-467C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-467C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-467C>T
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10670
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

22-38015779-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015779
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015779
    reference: chr 22
allele count: 4
allele frequency: 3.840762007182225e-5
allele num: 104146
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-466A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-466A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-466A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-466A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-466A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-466A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.304-28A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-466A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-466A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-466A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-466A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-466A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-466A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-466A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.145-28A>G
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10605
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6239
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20705
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

22-38015780-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015780
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015780
    reference: chr 22
allele count: 1
allele frequency: 9.604856215302456e-6
allele num: 104114
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.145-27T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-465T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-465T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-465T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-465T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-465T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-465T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-465T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-465T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-465T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-465T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-465T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.304-27T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-465T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-465T>C
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

22-38015786-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015786
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015786
    reference: chr 22
allele count: 2
allele frequency: 1.924594391731943e-5
allele num: 103918
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-459C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-459C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-459C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-459C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-459C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.145-21C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-459C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-459C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-459C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-459C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-459C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.304-21C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-459C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-459C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-459C>T
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10243
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

22-38015795-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015795
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015796
    reference: chr 22
allele count: 1
allele frequency: 9.639111659469464e-6
allele num: 103744
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-448dupC
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-448dupC
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-448dupC
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-448dupC
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-448dupC
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-448dupC
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-448dupC
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-448dupC
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-448dupC
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-448dupC
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-448dupC
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-448dupC
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.304-10dupC
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.145-10dupC
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-448dupC
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 3670
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9774
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP

22-38015796-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015796
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015796
    reference: chr 22
allele count: 3
allele frequency: 2.893406890166274e-5
allele num: 103684
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-449C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-449C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-449C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-449C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-449C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-449C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-449C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.304-11C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-449C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-449C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-449C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.145-11C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-449C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-449C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-449C>T
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9721
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23179
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5359
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD

22-38015809-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015809
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015809
    reference: chr 22
allele count: 1
allele frequency: 9.708926386920135e-6
allele num: 102998
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-436G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-436G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-436G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-436G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-436G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-436G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.306G>T
  hgvsp: ENST00000405147.3:c.306G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-436G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-436G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-436G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-436G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.147G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-436G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-436G>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-436G>T
  variant of: http://identifiers.org/hgnc/17842
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10538
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22099
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.306G>T
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

22-38015815-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015815
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015815
    reference: chr 22
allele count: 8
allele frequency: 7.8064012490242e-5
allele num: 102480
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-430G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-430G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-430G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-430G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.312G>A
  hgvsp: ENST00000405147.3:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.153G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-430G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-430G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-430G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-430G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-430G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-430G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-430G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-430G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-430G>A
  variant of: http://identifiers.org/hgnc/17842
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11767
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9585
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20249
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu104Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD

22-38015818-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015818
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015818
    reference: chr 22
allele count: 11
allele frequency: 1.075226775101658e-4
allele num: 102304
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-427G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-427G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-427G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.315G>A
  hgvsp: ENST00000405147.3:c.315G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-427G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-427G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-427G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-427G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-427G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.156G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-427G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-427G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-427G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-427G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-427G>A
  variant of: http://identifiers.org/hgnc/17842
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9410
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12001
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu105Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

22-38015819-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015819
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015819
    reference: chr 22
allele count: 1
allele frequency: 9.779951100244498e-6
allele num: 102250
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-426T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-426T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-426T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-426T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-426T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-426T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-426T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-426T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-426T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.316T>G
  hgvsp: ENSP00000384030.3:p.Ter106GlyextTer?
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-426T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.157T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-426T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-426T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-426T>G
  variant of: http://identifiers.org/hgnc/17842
canonical: false
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6065
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9279
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ter106GlyextTer?
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS

22-38015820-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015820
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015820
    reference: chr 22
allele count: 3
allele frequency: 2.937375161555634e-5
allele num: 102132
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-425G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-425G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-425G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.158G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-425G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.317G>A
  hgvsp: ENST00000405147.3:c.317G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-425G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-425G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-425G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-425G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-425G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-425G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-425G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-425G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-425G>A
  variant of: http://identifiers.org/hgnc/17842
canonical: false
consequence: stop retained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6072
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4095
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ter106Ter
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

22-38015824-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015824
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015824
    reference: chr 22
allele count: 1
allele frequency: 9.820867379006914e-6
allele num: 101824
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-421G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-421G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-421G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.*3G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-421G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-421G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-421G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-421G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.162G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-421G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-421G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-421G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-421G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-421G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-421G>A
  variant of: http://identifiers.org/hgnc/17842
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18666
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6180
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8974
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/22-38015832-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015832
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015832
    reference: chr 22
allele count: 23
allele frequency: 2.271290883235898e-4
allele num: 101264
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-413C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-413C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-413C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-413C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-413C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-413C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-413C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.*11C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-413C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.170C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-413C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-413C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-413C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-413C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-413C>A
  variant of: http://identifiers.org/hgnc/17842
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14464
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4927
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17221
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

22-38015832-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015832
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015832
    reference: chr 22
allele count: 1
allele frequency: 9.875177753199558e-6
allele num: 101264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-413C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-413C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-413C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-413C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-413C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-413C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-413C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.170C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-413C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-413C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-413C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-413C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-413C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.*11C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-413C>T
  variant of: http://identifiers.org/hgnc/17842
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

22-38015833-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015833
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015833
    reference: chr 22
allele count: 3
allele frequency: 2.963606907179832e-5
allele num: 101228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.171C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-412C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-412C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-412C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-412C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-412C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-412C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.*12C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-412C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-412C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-412C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-412C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-412C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-412C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-412C>T
  variant of: http://identifiers.org/hgnc/17842
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8429
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17073
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/22-38015834-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015834
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015834
    reference: chr 22
allele count: 1
allele frequency: 9.889240506329114e-6
allele num: 101120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-411C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.*13C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-411C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.172C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-411C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-411C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-411C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-411C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-411C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-411C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-411C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-411C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-411C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-411C>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-411C>A
  variant of: http://identifiers.org/hgnc/17842
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16879
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5001
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/22-38015840-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015840
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015839
    reference: chr 22
allele count: 2
allele frequency: 1.984835854074868e-5
allele num: 100764
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-404delA
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-404delA
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-404delA
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-404delA
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-404delA
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-404delA
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.179delA
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-404delA
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-404delA
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.*20delA
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-404delA
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-404delA
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-404delA
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-404delA
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-404delA
  variant of: http://identifiers.org/hgnc/17842
canonical: false
consequence: 3' UTR
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5880
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8022
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 1
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: CA
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

22-38015843-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015843
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015843
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 100690
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.181T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-402T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.*22T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-402T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-402T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-402T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-402T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-402T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-402T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-402T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-402T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-402T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-402T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-402T>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-402T>G
  variant of: http://identifiers.org/hgnc/17842
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6578
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16884
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: T
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

22-38015852-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015852
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015851
    reference: chr 22
allele count: 1
allele frequency: 1.003371327660941e-5
allele num: 99664
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-391delG
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.*33delG
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-391delG
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-391delG
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-391delG
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-391delG
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-391delG
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-391delG
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.192delG
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-391delG
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-391delG
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-391delG
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-391delG
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-391delG
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-391delG
  variant of: http://identifiers.org/hgnc/17842
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6794
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: AG
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

22-38015853-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015853
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015853
    reference: chr 22
allele count: 624
allele frequency: 6.271230729030572e-3
allele num: 99502
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-392G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-392G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-392G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.*32G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-392G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-392G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-392G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.191G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-392G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-392G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-392G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-392G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-392G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-392G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-392G>A
  variant of: http://identifiers.org/hgnc/17842
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 3.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6839
  bin: 7.5e0
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11172
  bin: 1.75e1
  variant carriers: 177
genotype depth: GenotypeDepth
  all individuals: 18383
  bin: 1.25e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 2.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
num of homozygotes: 6
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

22-38015858-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015858
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015858
    reference: chr 22
allele count: 1
allele frequency: 1.013787510137875e-5
allele num: 98640
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-387C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-387C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-387C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-387C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.*37C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-387C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-387C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-387C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-387C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.196C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-387C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-387C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-387C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-387C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-387C>T
  variant of: http://identifiers.org/hgnc/17842
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18386
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

22-38015859-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015859
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015859
    reference: chr 22
allele count: 4
allele frequency: 4.074813577278839e-5
allele num: 98164
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-386G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-386G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-386G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-386G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-386G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-386G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-386G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-386G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-386G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-386G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.*38G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.197G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-386G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-386G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-386G>A
  variant of: http://identifiers.org/hgnc/17842
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18354
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13440
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD

22-38015870-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38015870
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38015870
    reference: chr 22
allele count: 1
allele frequency: 1.098128788544321e-5
allele num: 91064
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000384030
  ensembl transcript: ENST00000405147
  gene symbol: GGA1
  hgvsc: ENST00000405147.3:c.*49C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-375C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-375C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-375C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-375C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-375C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-375C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-375C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-375C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.208C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-375C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-375C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-375C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-375C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-375C>T
  variant of: http://identifiers.org/hgnc/17842
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17603
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

22-38016196-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38016196
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38016196
    reference: chr 22
allele count: 1
allele frequency: 8.253276550790664e-6
allele num: 121164
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-49G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-49G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-49G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-49G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-49G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-49G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-49G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-49G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.534G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-49G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-49G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-49G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-49G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-49G>A
  variant of: http://identifiers.org/hgnc/17842
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5969
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP

22-38016204-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38016204
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38016204
    reference: chr 22
allele count: 2
allele frequency: 1.650219479190732e-5
allele num: 121196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.542G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-41G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-41G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-41G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-41G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-41G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-41G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-41G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-41G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-41G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-41G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-41G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-41G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-41G>A
  variant of: http://identifiers.org/hgnc/17842
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5969
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5234
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

22-38016209-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38016209
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38016209
    reference: chr 22
allele count: 1
allele frequency: 8.25082508250825e-6
allele num: 121200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-36G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-36G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-36G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-36G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.547G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-36G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-36G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-36G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-36G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-36G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-36G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-36G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-36G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-36G>A
  variant of: http://identifiers.org/hgnc/17842
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5969
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

22-38016211-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38016211
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38016211
    reference: chr 22
allele count: 1
allele frequency: 8.251233559417133e-6
allele num: 121194
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-34C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-34C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-34C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.549C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-34C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-34C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-34C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-34C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-34C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-34C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-34C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-34C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-34C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-34C>T
  variant of: http://identifiers.org/hgnc/17842
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5367
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5968
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

22-38016215-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38016215
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38016215
    reference: chr 22
allele count: 1
allele frequency: 8.24905548314718e-6
allele num: 121226
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-30A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-30A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-30A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-30A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-30A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-30A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-30A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-30A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-30A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.553A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-30A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-30A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-30A>G
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-30A>G
  variant of: http://identifiers.org/hgnc/17842
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5968
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

22-38016239-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38016239
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38016239
    reference: chr 22
allele count: 1
allele frequency: 8.24279991427488e-6
allele num: 121318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-6C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.577C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-6C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-6C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-6C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-6C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-6C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-6C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-6C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-6C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-6C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-6C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-6C>T
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-6C>T
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5967
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.304-6C>T
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD

22-38016240-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38016240
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38016240
    reference: chr 22
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-5T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-5T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-5T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.578T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-5T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-5T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-5T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-5T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-5T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-5T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-5T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-5T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-5T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-5T>C
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.304-5T>C
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

22-38016241-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38016241
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38016241
    reference: chr 22
allele count: 3
allele frequency: 2.472676920033628e-5
allele num: 121326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205-4G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85-4G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85-4G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85-4G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85-4G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85-4G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85-4G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355-4G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304-4G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.579G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304-4G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85-4G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85-4G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280-4G>A
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5966
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.304-4G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ

22-38016245-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38016245
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38016245
    reference: chr 22
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.85T>C
  hgvsp: ENSP00000416153.1:p.Tyr29His
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.85T>C
  hgvsp: ENSP00000403534.1:p.Tyr29His
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.85T>C
  hgvsp: ENSP00000411373.1:p.Tyr29His
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.85T>C
  hgvsp: ENSP00000414413.1:p.Tyr29His
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.85T>C
  hgvsp: ENSP00000404453.1:p.Tyr29His
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.280T>C
  hgvsp: ENSP00000390416.1:p.Tyr94His
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.205T>C
  hgvsp: ENSP00000338647.4:p.Tyr69His
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.85T>C
  hgvsp: ENSP00000385287.1:p.Tyr29His
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.304T>C
  hgvsp: ENSP00000341344.4:p.Tyr102His
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.583T>C
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.85T>C
  hgvsp: ENSP00000400159.1:p.Tyr29His
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.304T>C
  hgvsp: ENSP00000321288.8:p.Tyr102His
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.355T>C
  hgvsp: ENSP00000371175.5:p.Tyr119His
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.85T>C
  hgvsp: ENSP00000402930.1:p.Tyr29His
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr102His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

22-38016251-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38016251
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38016251
    reference: chr 22
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.91G>A
  hgvsp: ENSP00000416153.1:p.Gly31Ser
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100083
  ensembl transcript: ENST00000491295
  gene symbol: GGA1
  hgvsc: ENST00000491295.1:n.589G>A
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.310G>A
  hgvsp: ENSP00000321288.8:p.Gly104Ser
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.91G>A
  hgvsp: ENSP00000385287.1:p.Gly31Ser
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.91G>A
  hgvsp: ENSP00000402930.1:p.Gly31Ser
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.310G>A
  hgvsp: ENSP00000341344.4:p.Gly104Ser
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.91G>A
  hgvsp: ENSP00000403534.1:p.Gly31Ser
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.91G>A
  hgvsp: ENSP00000404453.1:p.Gly31Ser
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.91G>A
  hgvsp: ENSP00000414413.1:p.Gly31Ser
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.91G>A
  hgvsp: ENSP00000400159.1:p.Gly31Ser
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.286G>A
  hgvsp: ENSP00000390416.1:p.Gly96Ser
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.211G>A
  hgvsp: ENSP00000338647.4:p.Gly71Ser
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.361G>A
  hgvsp: ENSP00000371175.5:p.Gly121Ser
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.91G>A
  hgvsp: ENSP00000411373.1:p.Gly31Ser
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4742
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly104Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

22-38016257-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38016257
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38016257
    reference: chr 22
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.97C>T
  hgvsp: ENSP00000403534.1:p.Arg33Trp
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.97C>T
  hgvsp: ENSP00000400159.1:p.Arg33Trp
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.97C>T
  hgvsp: ENSP00000416153.1:p.Arg33Trp
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.217C>T
  hgvsp: ENSP00000338647.4:p.Arg73Trp
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.97C>T
  hgvsp: ENSP00000411373.1:p.Arg33Trp
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.97C>T
  hgvsp: ENSP00000414413.1:p.Arg33Trp
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.97C>T
  hgvsp: ENSP00000385287.1:p.Arg33Trp
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.316C>T
  hgvsp: ENSP00000321288.8:p.Arg106Trp
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.97C>T
  hgvsp: ENSP00000402930.1:p.Arg33Trp
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.367C>T
  hgvsp: ENSP00000371175.5:p.Arg123Trp
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.316C>T
  hgvsp: ENSP00000341344.4:p.Arg106Trp
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.97C>T
  hgvsp: ENSP00000404453.1:p.Arg33Trp
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.292C>T
  hgvsp: ENSP00000390416.1:p.Arg98Trp
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5967
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg106Trp
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

22-38016259-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38016259
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38016259
    reference: chr 22
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.99G>A
  hgvsp: ENST00000439161.1:c.99G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.99G>A
  hgvsp: ENST00000453208.1:c.99G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.369G>A
  hgvsp: ENST00000381756.5:c.369G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.294G>A
  hgvsp: ENST00000449944.1:c.294G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.99G>A
  hgvsp: ENST00000411501.1:c.99G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.99G>A
  hgvsp: ENST00000423024.1:c.99G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.99G>A
  hgvsp: ENST00000429218.1:c.99G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.318G>A
  hgvsp: ENST00000325180.8:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.99G>A
  hgvsp: ENST00000406772.1:c.99G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.99G>A
  hgvsp: ENST00000413251.1:c.99G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.219G>A
  hgvsp: ENST00000337437.4:c.219G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.318G>A
  hgvsp: ENST00000343632.4:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.99G>A
  hgvsp: ENST00000326597.2:c.99G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5968
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg106Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

22-38016262-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38016262
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38016262
    reference: chr 22
allele count: 2
allele frequency: 1.648233917357551e-5
allele num: 121342
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.321A>G
  hgvsp: ENST00000343632.4:c.321A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.102A>G
  hgvsp: ENST00000326597.2:c.102A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.372A>G
  hgvsp: ENST00000381756.5:c.372A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.102A>G
  hgvsp: ENST00000453208.1:c.102A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.321A>G
  hgvsp: ENST00000325180.8:c.321A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.102A>G
  hgvsp: ENST00000439161.1:c.102A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.102A>G
  hgvsp: ENST00000423024.1:c.102A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.102A>G
  hgvsp: ENST00000406772.1:c.102A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.222A>G
  hgvsp: ENST00000337437.4:c.222A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.102A>G
  hgvsp: ENST00000413251.1:c.102A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.102A>G
  hgvsp: ENST00000411501.1:c.102A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.297A>G
  hgvsp: ENST00000449944.1:c.297A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.102A>G
  hgvsp: ENST00000429218.1:c.102A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5968
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr107Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD

22-38016264-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38016264
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38016264
    reference: chr 22
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000402930
  ensembl transcript: ENST00000326597
  gene symbol: GGA1
  hgvsc: ENST00000326597.2:c.104C>T
  hgvsp: ENSP00000402930.1:p.Ser35Leu
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000321288
  ensembl transcript: ENST00000325180
  gene symbol: GGA1
  hgvsc: ENST00000325180.8:c.323C>T
  hgvsp: ENSP00000321288.8:p.Ser108Leu
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000400159
  ensembl transcript: ENST00000411501
  gene symbol: GGA1
  hgvsc: ENST00000411501.1:c.104C>T
  hgvsp: ENSP00000400159.1:p.Ser35Leu
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000403534
  ensembl transcript: ENST00000429218
  gene symbol: GGA1
  hgvsc: ENST00000429218.1:c.104C>T
  hgvsp: ENSP00000403534.1:p.Ser35Leu
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000414413
  ensembl transcript: ENST00000423024
  gene symbol: GGA1
  hgvsc: ENST00000423024.1:c.104C>T
  hgvsp: ENSP00000414413.1:p.Ser35Leu
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000338647
  ensembl transcript: ENST00000337437
  gene symbol: GGA1
  hgvsc: ENST00000337437.4:c.224C>T
  hgvsp: ENSP00000338647.4:p.Ser75Leu
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000385287
  ensembl transcript: ENST00000406772
  gene symbol: GGA1
  hgvsc: ENST00000406772.1:c.104C>T
  hgvsp: ENSP00000385287.1:p.Ser35Leu
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000416153
  ensembl transcript: ENST00000453208
  gene symbol: GGA1
  hgvsc: ENST00000453208.1:c.104C>T
  hgvsp: ENSP00000416153.1:p.Ser35Leu
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000404453
  ensembl transcript: ENST00000439161
  gene symbol: GGA1
  hgvsc: ENST00000439161.1:c.104C>T
  hgvsp: ENSP00000404453.1:p.Ser35Leu
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000341344
  ensembl transcript: ENST00000343632
  gene symbol: GGA1
  hgvsc: ENST00000343632.4:c.323C>T
  hgvsp: ENSP00000341344.4:p.Ser108Leu
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000411373
  ensembl transcript: ENST00000413251
  gene symbol: GGA1
  hgvsc: ENST00000413251.1:c.104C>T
  hgvsp: ENSP00000411373.1:p.Ser35Leu
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000371175
  ensembl transcript: ENST00000381756
  gene symbol: GGA1
  hgvsc: ENST00000381756.5:c.374C>T
  hgvsp: ENSP00000371175.5:p.Ser125Leu
  variant of: http://identifiers.org/hgnc/17842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100083
  ensembl protein: ENSP00000390416
  ensembl transcript: ENST00000449944
  gene symbol: GGA1
  hgvsc: ENST00000449944.1:c.299C>T
  hgvsp: ENSP00000390416.1:p.Ser100Leu
  variant of: http://identifiers.org/hgnc/17842
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5968
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4590
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser108Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

22-38016265-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38016265
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 38016265
    reference: chr 22
allele count: 2
allele frequency: 1.648179585647652e-5
allele num: 121346
alternate allele: A
canonical: true
consequence: synonymous
filter: PASS
hgvs: p.Ser108Ser
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 157
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 721
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1243
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 516
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13637
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 621
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 362
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2810
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4582
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47415
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1094
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.185822095756526e-5
allele num: 16166
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.849e0

FS
type: SiteQuality
SIO_000300: 6.596e0

VQSLOD
type: SiteQuality
SIO_000300: 9.2e-2

MQRankSum
type: SiteQuality
SIO_000300: -9.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.11e-1

QD
type: SiteQuality
SIO_000300: 1.307e1

DP
type: SiteQuality
SIO_000300: 1.481354e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

GenotypeDepth
all individuals: 2782
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1224
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 360
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 714
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 485
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 428
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13635
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1067
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47699
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4589
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1098
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2240
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 179
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10014
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.182762458266353e-5
allele num: 16174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6342
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.032e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

MQRankSum
type: SiteQuality
SIO_000300: -1.116e0

FS
type: SiteQuality
SIO_000300: 4.574e0

QD
type: SiteQuality
SIO_000300: 1.786e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e0

VQSLOD
type: SiteQuality
SIO_000300: -1.439e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.481492e6

GenotypeDepth
all individuals: 13643
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 632
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 260
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 479
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2812
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 70
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 157
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 360
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 428
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47682
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 188
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4589
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10018
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.236552491653271e-4
allele num: 16174
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.807468733485996e-5
allele num: 11354
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.32e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.21e-1

QD
type: SiteQuality
SIO_000300: 1.733e1

DP
type: SiteQuality
SIO_000300: 1.482537e6

FS
type: SiteQuality
SIO_000300: 3.067e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.09e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.142e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.92e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 623
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 708
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 476
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13713
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 360
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 39003
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1090
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4586
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2240
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 119
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47760
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1508
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1062
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.576659038901602e-5
allele num: 65550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16184
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

QD
type: SiteQuality
SIO_000300: 1.138e1

VQSLOD
type: SiteQuality
SIO_000300: 6.08e-1

FS
type: SiteQuality
SIO_000300: 3.021e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

DP
type: SiteQuality
SIO_000300: 1.48316e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e0

GenotypeDepth
all individuals: 163
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2795
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 477
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 39013
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1173
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 427
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 361
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2239
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1511
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47845
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4587
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10038
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.57331655129012e-4
allele num: 6356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16192
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.171e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

DP
type: SiteQuality
SIO_000300: 1.482843e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.4e-2

QD
type: SiteQuality
SIO_000300: 1.317e1

FS
type: SiteQuality
SIO_000300: 6.369e0

MQ
type: SiteQuality
SIO_000300: 5.917e1

VQSLOD
type: SiteQuality
SIO_000300: -8.999999999999999e-3

GenotypeDepth
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 879
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13909
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2827
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 363
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 638
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 201
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1174
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 552
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2239
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47509
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4539
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525320317266626e-5
allele num: 65560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10040
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.417e0

DP
type: SiteQuality
SIO_000300: 1.483488e6

VQSLOD
type: SiteQuality
SIO_000300: -6.923e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.8e-2

QD
type: SiteQuality
SIO_000300: 7.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.03e-1

GenotypeDepth
all individuals: 638
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13909
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 363
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1174
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 433
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 552
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38547
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4539
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47509
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2239
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 266
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10040
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525320317266626e-5
allele num: 65560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.8e-2

QD
type: SiteQuality
SIO_000300: 7.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.922e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.03e-1

DP
type: SiteQuality
SIO_000300: 1.483488e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.417e0

VQSLOD
type: SiteQuality
SIO_000300: -6.923e-1

GenotypeDepth
all individuals: 1119
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13907
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 428
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38263
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 361
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1252
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 616
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 156
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2238
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1047
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1843
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47300
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4494
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.191950464396285e-5
allele num: 16150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10008
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.12e-1

QD
type: SiteQuality
SIO_000300: 8.83e0

DP
type: SiteQuality
SIO_000300: 1.479443e6

VQSLOD
type: SiteQuality
SIO_000300: 1.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.69e-1

GenotypeDepth
all individuals: 621
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 587
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 202
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 38195
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 428
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 13907
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2802
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2246
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1036
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47233
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4476
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6358
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.996001599360256e-5
allele num: 10004
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.636152600873576e-5
allele num: 65478
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.76678445229682e-4
allele num: 11320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-2

FS
type: SiteQuality
SIO_000300: 1.781e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.479257e6

QD
type: SiteQuality
SIO_000300: 1.119e1

GenotypeDepth
all individuals: 627
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13881
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1273
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 360
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2811
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 70
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47225
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4472
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.001401962747847e-4
allele num: 9986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527370478983382e-5
allele num: 65472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.478721e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

FS
type: SiteQuality
SIO_000300: 5.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.94e-1

QD
type: SiteQuality
SIO_000300: 1.256e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.899e0

GenotypeDepth
all individuals: 429
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 36910
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 787
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1953
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 362
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 163
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13850
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2810
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 46007
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 998
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2672
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2242
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 979
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4356
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11264
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.160092807424594e-3
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16050
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.070970119460738e-5
allele num: 65126
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

DP
type: SiteQuality
SIO_000300: 1.464957e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.025e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.949e-1

QD
type: SiteQuality
SIO_000300: 7.8e0

GenotypeDepth
all individuals: 1953
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 362
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 13850
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 36910
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1589
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 787
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2672
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4356
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2242
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46007
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 998
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16050
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535485059730369e-5
allele num: 65126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11264
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.025e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.464957e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 7.8e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.59e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.949e-1

GenotypeDepth
all individuals: 361
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 435
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2833
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 202
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35659
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1884
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 628
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 923
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44614
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4202
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2240
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 458
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3491
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.019783805833163e-4
allele num: 9806
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64820
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.097e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.395e0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.32e-1

QD
type: SiteQuality
SIO_000300: 4.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

DP
type: SiteQuality
SIO_000300: 1.451058e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

GenotypeDepth
all individuals: 634
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 361
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2471
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 425
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41034
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1481
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3893
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2240
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 269
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5813
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11048
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6114
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.177578897786152e-4
allele num: 8492
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -7.063e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.08e-1

QD
type: SiteQuality
SIO_000300: 8.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-2

FS
type: SiteQuality
SIO_000300: 5.003e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

DP
type: SiteQuality
SIO_000300: 1.407121e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.186e0

GenotypeDepth
all individuals: 121
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1996
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30287
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 163
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 621
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1734
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1965
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3700
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38794
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2238
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6909
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 858
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10980
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6072
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15770
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.496e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 3.219e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 4.41e0

MQRankSum
type: SiteQuality
SIO_000300: 1.83e0

DP
type: SiteQuality
SIO_000300: 1.382583e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.654e0

GenotypeDepth
all individuals: 423
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3417
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 180
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3241
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 570
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8824
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33565
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3383
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2592
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1618
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2239
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 800
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.154773171808947e-5
allele num: 63396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9496
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.755e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.967e0

QD
type: SiteQuality
SIO_000300: 7.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.57e-1

FS
type: SiteQuality
SIO_000300: 9.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

DP
type: SiteQuality
SIO_000300: 1.330404e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.85e-1

GenotypeDepth
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9626
bin: 2.75e1
variant carriers: 2

GenotypeDepth
all individuals: 360
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19083
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15325
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 426
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1022
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11103
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3663
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5866
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4134
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2742
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 674
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25020
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62808
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.566405748748877e-4
allele num: 15586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5946
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.267e1

VQSLOD
type: SiteQuality
SIO_000300: 9.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.75e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.929e0

FS
type: SiteQuality
SIO_000300: 2.179e0

MQRankSum
type: SiteQuality
SIO_000300: 9.29e-1

DP
type: SiteQuality
SIO_000300: 1.242621e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.39e-1

GenotypeDepth
all individuals: 3473
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 360
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18287
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9472
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 192
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4267
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24236
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6135
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2240
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 456
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3873
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11259
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2697
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10690
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.285408185129633e-4
allele num: 9334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8318
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-1

FS
type: SiteQuality
SIO_000300: 6.142e0

QD
type: SiteQuality
SIO_000300: 1.264e1

DP
type: SiteQuality
SIO_000300: 1.23516e6

MQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

GenotypeDepth
all individuals: 596
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3704
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 424
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2061
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11529
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2460
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19327
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2238
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1687
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5302
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4825
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7440
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62438
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.444960041247745e-5
allele num: 15516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.19e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

VQSLOD
type: SiteQuality
SIO_000300: -6.391e-1

QD
type: SiteQuality
SIO_000300: 1.444e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.303e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.581e0

DP
type: SiteQuality
SIO_000300: 1.195235e6

GenotypeDepth
all individuals: 200
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 428
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7441
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 70
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2065
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1789
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11518
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2317
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7890
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5026
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17089
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6007
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2240
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61950
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.299376299376299e-4
allele num: 15392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8232
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.94e0

MQRankSum
type: SiteQuality
SIO_000300: -7.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

DP
type: SiteQuality
SIO_000300: 1.177388e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.844e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.607e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

GenotypeDepth
all individuals: 360
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15943
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14581
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2303
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2162
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2472
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8257
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11335
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2245
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 666
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6638
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5138
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.920031360250882e-4
allele num: 15306
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.161205e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.236e0

QD
type: SiteQuality
SIO_000300: 1.715e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 16943
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 361
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1025
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2748
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8491
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11132
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2051
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2789
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5210
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12550
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 912
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7097
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.62877060394814e-5
allele num: 61396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.150686e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.355e0

MQRankSum
type: SiteQuality
SIO_000300: -1.288e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -4.33e-1

QD
type: SiteQuality
SIO_000300: 9.359999999999999e0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 360
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 459
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 70
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16902
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 200
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7784
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9434
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3522
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8796
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2342
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5247
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1741
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5199
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6496
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3113
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5528
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.003613006824568e-4
allele num: 9964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14914
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.119e0

MQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.266e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.126052e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.658e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

QD
type: SiteQuality
SIO_000300: 1.621e1

GenotypeDepth
all individuals: 104
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2894
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15812
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 57
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11345
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2250
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2659
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8131
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1228
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3773
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19109
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3780
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4392
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1503
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 351
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3023
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3629
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6118
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.745810055865922e-5
allele num: 57280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.824e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-1

DP
type: SiteQuality
SIO_000300: 1.171066e6

MQRankSum
type: SiteQuality
SIO_000300: 2.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.71e-1

QD
type: SiteQuality
SIO_000300: 6.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeDepth
all individuals: 570
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11073
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 57
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2889
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2751
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1503
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 198
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3624
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2662
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1214
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8194
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19573
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2225
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4278
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3785
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3747
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1221
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6112
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.255335174491589e-4
allele num: 7966
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.36e0

DP
type: SiteQuality
SIO_000300: 1.172034e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.96e-1

QD
type: SiteQuality
SIO_000300: 1.508e1

GenotypeDepth
all individuals: 359
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 569
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8295
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1135
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 69
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 197
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3711
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2668
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3628
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4016
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2188
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20328
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8323
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2310
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 344
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3763
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1168
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57256
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.921373200442968e-5
allele num: 14448
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.275e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.255e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.174792e6

MQ
type: SiteQuality
SIO_000300: 5.867e1

FS
type: SiteQuality
SIO_000300: 2.16e0

VQSLOD
type: SiteQuality
SIO_000300: -8.827e-1

QD
type: SiteQuality
SIO_000300: 1.24e1

GenotypeDepth
all individuals: 197
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8526
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 568
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 359
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3581
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3727
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3030
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1928
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1863
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2702
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22056
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1141
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3461
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8509
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.746114894360049e-5
allele num: 57270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7966
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.547e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
SIO_000300: 1.186e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.389999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.185185e6

GenotypeDepth
all individuals: 6562
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2944
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 197
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23719
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3702
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1539
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3494
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8665
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2329
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3182
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1118
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2693
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.659574468085106e-4
allele num: 7520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7946
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6090
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14432
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 1.004e1

FS
type: SiteQuality
SIO_000300: 2.843e0

VQSLOD
type: SiteQuality
SIO_000300: -2.907e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

DP
type: SiteQuality
SIO_000300: 1.195816e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeDepth
all individuals: 104
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5148
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 197
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8756
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1133
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 57
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8736
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3749
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2666
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24724
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2147
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1372
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3460
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3067
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6090
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.993496048674733e-5
allele num: 57196
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.197722e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

QD
type: SiteQuality
SIO_000300: 9.960000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.71e-1

FS
type: SiteQuality
SIO_000300: 6.458e0

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 104
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 569
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 197
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8797
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2651
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3014
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1313
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1449
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3419
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3751
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8735
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25076
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1496
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 279
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.326611833377554e-4
allele num: 7538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7952
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6088
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57200
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.92e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

QD
type: SiteQuality
SIO_000300: 1.92e1

DP
type: SiteQuality
SIO_000300: 1.199476e6

FS
type: SiteQuality
SIO_000300: 1.527e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.342e-1

GenotypeDepth
all individuals: 57
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2966
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9194
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 197
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4881
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2658
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8974
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1598
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1170
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1576
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25161
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3283
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1127
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3701
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2655
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1496
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57080
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7938
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.643115346697338e-4
allele num: 6086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.946290033817386e-5
allele num: 10054
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7526
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.174e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.81e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

QD
type: SiteQuality
SIO_000300: 8.01e0

DP
type: SiteQuality
SIO_000300: 1.210674e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.97e-1

GenotypeDepth
all individuals: 23075
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 572
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 197
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 57
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9571
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9391
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2087
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3651
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2568
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2982
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1233
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27666
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1495
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57016
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6080
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.936736958934517e-5
allele num: 14416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7508
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.593e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.377e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.242e0

VQSLOD
type: SiteQuality
SIO_000300: 6.99e-1

MQ
type: SiteQuality
SIO_000300: 5.811e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.04e0

QD
type: SiteQuality
SIO_000300: 8.27e0

DP
type: SiteQuality
SIO_000300: 1.222881e6

GenotypeDepth
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 572
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 359
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9588
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 57
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2971
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1045
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3621
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1211
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2028
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 754
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1091
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2562
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1077
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27708
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9434
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6062
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.264635687210445e-5
allele num: 56984
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10014
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.986e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.457e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.04e-1

DP
type: SiteQuality
SIO_000300: 1.224451e6

FS
type: SiteQuality
SIO_000300: 3.902e0

QD
type: SiteQuality
SIO_000300: 1.093e1

GenotypeDepth
all individuals: 5723
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 569
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 57
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1574
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3021
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1495
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 728
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3474
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2837
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27423
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1127
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10783
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6000
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9900
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.340482573726542e-4
allele num: 7460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14408
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.43e-1

QD
type: SiteQuality
SIO_000300: 6.52e0

VQSLOD
type: SiteQuality
SIO_000300: -1.104e0

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.6e-1

DP
type: SiteQuality
SIO_000300: 1.214492e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.209e0

GenotypeDepth
all individuals: 197
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5935
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 127
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 107
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1015
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11818
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1517
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3183
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1019
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3348
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1660
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24606
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3312
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1501
bin: 9.75e1
variant carriers: 8

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.418942887548776e-4
allele num: 56380
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.139e0

FS
type: SiteQuality
SIO_000300: 4.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.47e-1

DP
type: SiteQuality
SIO_000300: 1.194678e6

QD
type: SiteQuality
SIO_000300: 9.58e0

GenotypeDepth
all individuals: 199
bin: 5.25e1
variant carriers: 2

GenotypeDepth
all individuals: 20093
bin: 2.25e1
variant carriers: 2

GenotypeDepth
all individuals: 569
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 358
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 825
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2923
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 12162
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25103
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1649
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3310
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3290
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3242
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1502
bin: 9.75e1
variant carriers: 11

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56310
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 7.66764254844556e-4
allele num: 14346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.75e0

QD
type: SiteQuality
SIO_000300: 1.017e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.02e-1

DP
type: SiteQuality
SIO_000300: 1.190286e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.528e0

MQRankSum
type: SiteQuality
SIO_000300: 2.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 2885
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19662
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 57
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1692
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 966
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12448
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24177
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3415
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3334
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3269
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1492
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5958
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14350
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.286670097786928e-4
allele num: 7772
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.244e0

QD
type: SiteQuality
SIO_000300: 9.06e0

MQRankSum
type: SiteQuality
SIO_000300: -1.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.183331e6

MQ
type: SiteQuality
SIO_000300: 5.99e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 69
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19702
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9278
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 570
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3232
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3321
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1681
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3394
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 998
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1004
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 12477
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24736
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7756
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5952
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.33731853116994e-5
allele num: 56208
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7400
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

DP
type: SiteQuality
SIO_000300: 1.183961e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

QD
type: SiteQuality
SIO_000300: 9.449999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

GenotypeDepth
all individuals: 4506
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 568
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1128
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 197
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23395
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 978
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13135
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3545
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3164
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1493
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 325
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3642
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 830
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1794
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5940
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.293995859213251e-4
allele num: 7728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.170145e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.13e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.449e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 2.488e1

VQSLOD
type: SiteQuality
SIO_000300: -1.087e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 359
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 31
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 918
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8505
bin: 2.75e1
variant carriers: 2

GenotypeDepth
all individuals: 2822
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 265
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1913
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21934
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3913
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14148
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4059
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2929
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 9.75e1
variant carriers: 23

GenotypeQuality
all individuals: 942
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.047339757017176e-4
allele num: 9548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7674
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 3.0103995621237e-3
allele num: 7308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14282
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

FS
type: SiteQuality
SIO_000300: 1.805e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

DP
type: SiteQuality
SIO_000300: 1.148194e6

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.932e0

QD
type: SiteQuality
SIO_000300: 1.054e1

GenotypeDepth
all individuals: 4927
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8505
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 359
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2929
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1913
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4059
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3913
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14148
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21934
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 192
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.792692983399663e-5
allele num: 55782
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7674
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.148194e6

FS
type: SiteQuality
SIO_000300: 1.805e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.932e0

QD
type: SiteQuality
SIO_000300: 1.054e1

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e-1

GenotypeDepth
all individuals: 69
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4940
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14651
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 196
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14304
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1492
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 323
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2914
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4105
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21894
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1948
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3952
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5910
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7670
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.141361256544502e-4
allele num: 9550
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 8.605e0

QD
type: SiteQuality
SIO_000300: 8.09e0

MQRankSum
type: SiteQuality
SIO_000300: -6.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -6.758e-1

DP
type: SiteQuality
SIO_000300: 1.145296e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.196e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.55e-1

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2814
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 358
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 57
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2886
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1972
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21789
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4164
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14433
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4003
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14264
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.796041524480046e-5
allele num: 55678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.589e0

VQSLOD
type: SiteQuality
SIO_000300: -3.508e0

DP
type: SiteQuality
SIO_000300: 1.142354e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

MQ
type: SiteQuality
SIO_000300: 5.836e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.742e0

QD
type: SiteQuality
SIO_000300: 1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.78e-1

GenotypeDepth
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 57
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14720
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 358
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19553
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4831
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15439
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2687
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4496
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1488
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2311
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 734
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1016
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.603343903142116e-5
allele num: 55504
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14226
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.224e0

QD
type: SiteQuality
SIO_000300: 2.735e1

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 1.117424e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.467e0

MQRankSum
type: SiteQuality
SIO_000300: -2.49e-1

GenotypeDepth
all individuals: 13928
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 358
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2715
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 568
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2434
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5089
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 867
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15813
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4694
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19101
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1488
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2649
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9482
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7290
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.107828e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.231e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

QD
type: SiteQuality
SIO_000300: 7.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeDepth
all individuals: 8860
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 31
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10689
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1115
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1488
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16606
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13016
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6917
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3850
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5613
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2282
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1057
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14114
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.821294576184752e-5
allele num: 54906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5832
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

QD
type: SiteQuality
SIO_000300: 6.7e0

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.13e-1

FS
type: SiteQuality
SIO_000300: 4.559e0

MQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

DP
type: SiteQuality
SIO_000300: 1.056879e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.774e0

GenotypeDepth
all individuals: 55
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 7.25e1
variant carriers: 3

GenotypeDepth
all individuals: 79
bin: 6.75e1
variant carriers: 4

GenotypeDepth
all individuals: 1126
bin: 3.75e1
variant carriers: 18

GenotypeDepth
all individuals: 31
bin: 9.25e1
variant carriers: 3

GenotypeDepth
all individuals: 8486
bin: 2.25e1
variant carriers: 132

GenotypeDepth
all individuals: 129
bin: 5.75e1
variant carriers: 5

GenotypeDepth
all individuals: 106
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 538
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3958
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 843
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 475
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 16513
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1075
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 6993
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 650
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 308
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 330
bin: 9.25e1
variant carriers: 8

GenotypeQuality
all individuals: 529
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 12326
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 5606
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1408
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 755
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2046
bin: 9.75e1
variant carriers: 597

GenotypeQuality
all individuals: 567
bin: 8.25e1
variant carriers: 7

GenotypeQuality
all individuals: 2244
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 249
bin: 8.75e1
variant carriers: 5

South Asian
type: Population
allele count: 13
allele frequency: 9.209407764239161e-4
allele num: 14116
num of homozygotes: 0

Latino
type: Population
allele count: 24
allele frequency: 2.582311168495804e-3
allele num: 9294
num of homozygotes: 0

East Asian
type: Population
allele count: 135
allele frequency: 1.801922050186866e-2
allele num: 7492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5818
num of homozygotes: 0

African
type: Population
allele count: 445
allele frequency: 6.15661317100166e-2
allele num: 7228
num of homozygotes: 6

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 9.124087591240875e-5
allele num: 54800
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.652519893899204e-3
allele num: 754
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.297e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.87e-1

DP
type: SiteQuality
SIO_000300: 1.053649e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

GenotypeDepth
all individuals: 7168
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 71
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 56
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 65
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 199
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7110
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16562
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7713
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1474
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1136
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4740
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1410
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2156
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10287
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5894
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5778
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.089561996077577e-4
allele num: 9178
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

VQSLOD
type: SiteQuality
SIO_000300: -8.169999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.031949e6

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.528e0

QD
type: SiteQuality
SIO_000300: 6.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

GenotypeDepth
all individuals: 7261
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6950
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 103
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 65
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2495
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1237
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7784
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1476
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 772
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16487
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4868
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1496
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5899
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9838
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2116
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.397270407219736e-5
allele num: 54074
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13994
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5754
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7102
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

FS
type: SiteQuality
SIO_000300: 2.79e0

DP
type: SiteQuality
SIO_000300: 1.028078e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.25e-1

QD
type: SiteQuality
SIO_000300: 1.172e1

GenotypeDepth
all individuals: 128
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8504
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 103
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7870
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 65
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 56
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3604
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8042
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6284
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11615
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2454
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5234
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2533
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2041
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5634
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2597
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1790
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 240
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8086
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.988862370723946e-5
allele num: 50280
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.39e0

VQSLOD
type: SiteQuality
SIO_000300: 2.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.46e-1

DP
type: SiteQuality
SIO_000300: 1.005658e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.047e0

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.83e-1

GenotypeDepth
all individuals: 3890
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4600
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2505
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 5643
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4905
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1449
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2962
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1906
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41033
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1995
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1915
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6469
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502223290469895e-5
allele num: 66568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.189e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.64e-1

FS
type: SiteQuality
SIO_000300: 7.52e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.742e0

DP
type: SiteQuality
SIO_000300: 3.206473e6

GenotypeDepth
all individuals: 386
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3055
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2415
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1477
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4180
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1871
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2974
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41034
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7053
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1429
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214624073849144e-4
allele num: 16466
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 3.208751e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.862e0

MQRankSum
type: SiteQuality
SIO_000300: 1.92e0

QD
type: SiteQuality
SIO_000300: 1.217e1

FS
type: SiteQuality
SIO_000300: 1.261e0

VQSLOD
type: SiteQuality
SIO_000300: -8.267e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.326e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 2980
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5446
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5320
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3890
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2353
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1887
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2986
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1862
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41029
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 163
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7390
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073858114674441e-5
allele num: 16464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.69e-1

QD
type: SiteQuality
SIO_000300: 1.616e1

MQRankSum
type: SiteQuality
SIO_000300: 6.78e-1

DP
type: SiteQuality
SIO_000300: 3.211004e6

FS
type: SiteQuality
SIO_000300: 4.649e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.257e0

VQSLOD
type: SiteQuality
SIO_000300: -8.353e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.893e1

GenotypeDepth
all individuals: 3056
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5446
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5643
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1476
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3890
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41030
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1989
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2975
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1887
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1161
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1416
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7450
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501726986033939e-5
allele num: 66590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.212073e6

FS
type: SiteQuality
SIO_000300: 1.735e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
SIO_000300: -9.677e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 8.51e0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.804e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.084e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.419999999999999e-1

GenotypeDepth
all individuals: 2353
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1476
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3890
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3056
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4905
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41030
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7646
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1857
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3008
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1989
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501456412720339e-5
allele num: 66602
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.249e1

FS
type: SiteQuality
SIO_000300: 5.269e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

VQSLOD
type: SiteQuality
SIO_000300: 8.76e-1

DP
type: SiteQuality
SIO_000300: 3.213285e6

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.545e0

GenotypeDepth
all individuals: 4726
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4591
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3184
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1476
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1059
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3056
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4905
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2415
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1984
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3044
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8120
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1879
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1858
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41025
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1420
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500330072615976e-5
allele num: 66652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.92e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.682e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 3.218249e6

MQ
type: SiteQuality
SIO_000300: 5.93e1

QD
type: SiteQuality
SIO_000300: 1.06e1

VQSLOD
type: SiteQuality
SIO_000300: 4.38e-1

GenotypeDepth
all individuals: 4906
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5967
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4591
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2415
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5668
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1059
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4183
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1880
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3045
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8129
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41024
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1420
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1860
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.218314e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.475e0

FS
type: SiteQuality
SIO_000300: 6.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.005e0

QD
type: SiteQuality
SIO_000300: 1.419e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.47e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.51e-1

GenotypeDepth
all individuals: 4907
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5675
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1984
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5447
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5642
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1059
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3890
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3057
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41024
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1881
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3044
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1421
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8135
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817080557238038e-4
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.274e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.28e-1

QD
type: SiteQuality
SIO_000300: 1.277e1

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-2

DP
type: SiteQuality
SIO_000300: 3.218517e6

MQ
type: SiteQuality
SIO_000300: 5.977e1

GenotypeDepth
all individuals: 5967
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5447
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4906
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2414
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1059
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1984
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4735
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5642
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3891
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4591
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41024
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3045
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8171
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1861
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1879
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1419
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.016e0

MQ
type: SiteQuality
SIO_000300: 5.912e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.401e0

VQSLOD
type: SiteQuality
SIO_000300: -2.847e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.79e-1

DP
type: SiteQuality
SIO_000300: 3.218471e6

QD
type: SiteQuality
SIO_000300: 1.197e1

GenotypeDepth
all individuals: 35
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 53
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5696
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1476
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1984
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1059
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5967
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3058
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5643
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1880
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3052
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8182
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41024
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1862
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1419
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -8.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.13e-1

DP
type: SiteQuality
SIO_000300: 3.218732e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.88e0

QD
type: SiteQuality
SIO_000300: 8.029999999999999e0

FS
type: SiteQuality
SIO_000300: 2.506e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e0

VQSLOD
type: SiteQuality
SIO_000300: -5.881999999999999e-1

GenotypeDepth
all individuals: 5446
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4182
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3058
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2414
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4591
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2349
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3051
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1880
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41023
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1862
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8182
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.934e0

DP
type: SiteQuality
SIO_000300: 3.21899e6

MQRankSum
type: SiteQuality
SIO_000300: 2.29e0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.459e1

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeDepth
all individuals: 2414
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3058
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4746
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1059
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2349
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1984
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1862
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8198
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1880
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41023
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3053
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499745043342632e-5
allele num: 66678
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
SIO_000300: 1.24e1

DP
type: SiteQuality
SIO_000300: 3.218995e6

MQRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.383e0

FS
type: SiteQuality
SIO_000300: 5.754e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.93e-1

GenotypeDepth
all individuals: 5643
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5712
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2348
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3058
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3891
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4591
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1862
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41024
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3053
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1419
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8205
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1880
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499790029395885e-5
allele num: 66676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.84e-1

FS
type: SiteQuality
SIO_000300: 3.963e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.28e-1

DP
type: SiteQuality
SIO_000300: 3.218963e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
type: SiteQuality
SIO_000300: 7.85e-1

QD
type: SiteQuality
SIO_000300: 1.336e1

GenotypeDepth
all individuals: 3058
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1059
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5644
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5714
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2414
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1880
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1419
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1861
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3050
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41023
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8203
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.3e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.4e-2

DP
type: SiteQuality
SIO_000300: 3.218925e6

VQSLOD
type: SiteQuality
SIO_000300: 2.95e-1

QD
type: SiteQuality
SIO_000300: 1.402e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0