X-64748211-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064748211
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064748211
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 37455
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.885G>A
  hgvsp: ENST00000374807.5:c.885G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.759G>A
  hgvsp: ENST00000374804.5:c.759G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.885G>A
  hgvsp: ENST00000374811.3:c.885G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.846+881G>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.846+881G>A
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys295Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

X-64748248-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064748248
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064748248
    reference: chr 0
allele count: 19
allele frequency: 8.974964572508266e-4
allele num: 21170
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.722T>G
  hgvsp: ENSP00000363937.5:p.Val241Gly
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.846+844T>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.848T>G
  hgvsp: ENSP00000363944.3:p.Val283Gly
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.846+844T>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.848T>G
  hgvsp: ENSP00000363940.5:p.Val283Gly
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 26671
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 2
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2808
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Val283Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD

X-64748270-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064748270
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064748270
    reference: chr 0
allele count: 1
allele frequency: 5.699954400364797e-5
allele num: 17544
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.721-21T>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.847-21T>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.847-21T>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.846+822T>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.846+822T>G
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 46
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP

X-64749053-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749053
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749053
    reference: chr 0
allele count: 1
allele frequency: 1.177107611177814e-5
allele num: 84954
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.846+39C>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.720+39C>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.846+39C>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.846+39C>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.846+39C>T
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

X-64749066-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749066
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749066
    reference: chr 0
allele count: 1
allele frequency: 1.176055509820064e-5
allele num: 85030
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.846+26T>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.846+26T>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.846+26T>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.846+26T>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.720+26T>A
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18291
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
  all individuals: 2570
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1665
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 437
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5793
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 733
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 3670
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2478
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: QD

X-64749067-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749067
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749067
    reference: chr 0
allele count: 6
allele frequency: 7.058242262401921e-5
allele num: 85007
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.846+25G>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.846+25G>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.720+25G>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.846+25G>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.846+25G>A
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2967
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18290
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4264
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1660
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genotype quality: GenotypeQuality
  all individuals: 62
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

X-64749069-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749069
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749069
    reference: chr 0
allele count: 1
allele frequency: 1.176539796458615e-5
allele num: 84995
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.846+23G>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.846+23G>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.846+23G>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.720+23G>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.846+23G>T
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

X-64749069-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749069
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749069
    reference: chr 0
allele count: 1
allele frequency: 1.176539796458615e-5
allele num: 84995
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.846+23G>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.846+23G>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.846+23G>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.720+23G>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.846+23G>C
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

X-64749093-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749093
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749093
    reference: chr 0
allele count: 2
allele frequency: 2.351226164444758e-5
allele num: 85062
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.719C>T
  hgvsp: ENSP00000363937.5:p.Thr240Met
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.845C>T
  hgvsp: ENSP00000308649.8:p.Thr282Met
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.845C>T
  hgvsp: ENSP00000363944.3:p.Thr282Met
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.845C>T
  hgvsp: ENSP00000363940.5:p.Thr282Met
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.845C>T
  hgvsp: ENSP00000473471.1:p.Thr282Met
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 424
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19715
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 210
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
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genotype depth: GenotypeDepth
  all individuals: 133
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genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3632
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 924
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 590
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
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genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr282Met
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP

X-64749101-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749101
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749101
    reference: chr 0
allele count: 1
allele frequency: 1.175917215428034e-5
allele num: 85040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.837G>A
  hgvsp: ENST00000312391.8:c.837G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.711G>A
  hgvsp: ENST00000374804.5:c.711G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.837G>A
  hgvsp: ENST00000374811.3:c.837G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.837G>A
  hgvsp: ENST00000484069.1:c.837G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.837G>A
  hgvsp: ENST00000374807.5:c.837G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
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genotype depth: GenotypeDepth
  all individuals: 2944
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 20002
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1932
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu279Glu
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

X-64749113-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749113
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749113
    reference: chr 0
allele count: 1
allele frequency: 1.17871708432542e-5
allele num: 84838
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.825A>G
  hgvsp: ENST00000374811.3:c.825A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.825A>G
  hgvsp: ENST00000374807.5:c.825A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.825A>G
  hgvsp: ENST00000312391.8:c.825A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.699A>G
  hgvsp: ENST00000374804.5:c.699A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.825A>G
  hgvsp: ENST00000484069.1:c.825A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 715
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  variant carriers: 0
hgvs: p.Ser275Ser
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS

X-64749114-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749114
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749114
    reference: chr 0
allele count: 1
allele frequency: 1.179941002949853e-5
allele num: 84750
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.824C>A
  hgvsp: ENSP00000363944.3:p.Ser275Ter
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.824C>A
  hgvsp: ENSP00000473471.1:p.Ser275Ter
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.824C>A
  hgvsp: ENSP00000363940.5:p.Ser275Ter
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.698C>A
  hgvsp: ENSP00000363937.5:p.Ser233Ter
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.824C>A
  hgvsp: ENSP00000308649.8:p.Ser275Ter
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 423
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
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genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4457
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser275Ter
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

X-64749141-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749141
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749141
    reference: chr 0
allele count: 1
allele frequency: 1.204470996338408e-5
allele num: 83024
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.800-3C>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.800-3C>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.800-3C>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.674-3C>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.800-3C>T
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6611
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
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genotype depth: GenotypeDepth
  all individuals: 4401
  bin: 7.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 15924
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genotype depth: GenotypeDepth
  all individuals: 16459
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 577
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genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 97
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genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 254
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genotype quality: GenotypeQuality
  all individuals: 8093
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genotype quality: GenotypeQuality
  all individuals: 1707
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 569
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 129
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genotype quality: GenotypeQuality
  all individuals: 1583
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genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
hgvs: c.800-3C>T
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

X-64749163-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749163
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749163
    reference: chr 0
allele count: 3
allele frequency: 3.691626161324063e-5
allele num: 81265
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.800-25A>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.800-25A>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.674-25A>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.800-25A>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.800-25A>G
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8630
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1521
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 423
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5755
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 238
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genotype quality: GenotypeQuality
  all individuals: 693
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

X-64749173-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749173
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749173
    reference: chr 0
allele count: 1
allele frequency: 1.250531475877248e-5
allele num: 79966
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.800-35T>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.674-35T>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.800-35T>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.800-35T>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.800-35T>C
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5476
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 260
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD

X-64749185-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749185
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749185
    reference: chr 0
allele count: 45
allele frequency: 5.797026769381393e-4
allele num: 77626
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.674-47A>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.800-47A>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.800-47A>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.800-47A>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.800-47A>G
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7099
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5760
  bin: 9.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 1469
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4273
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

X-64749435-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749435
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749435
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 60050
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.799+39A>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.673+39A>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.799+39A>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.799+39A>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.799+39A>C
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP

X-64749439-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749439
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749439
    reference: chr 0
allele count: 1
allele frequency: 1.656012983141788e-5
allele num: 60386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.799+35G>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.673+35G>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.799+35G>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.799+35G>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.799+35G>A
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-64749445-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749445
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749445
    reference: chr 0
allele count: 1
allele frequency: 1.637036309465344e-5
allele num: 61086
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.799+29C>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.799+29C>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.799+29C>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.673+29C>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.799+29C>T
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

X-64749448-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749448
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749448
    reference: chr 0
allele count: 2
allele frequency: 3.240178209801539e-5
allele num: 61725
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.799+26G>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.673+26G>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.799+26G>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.799+26G>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.799+26G>A
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 627
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

X-64749449-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749449
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749449
    reference: chr 0
allele count: 3
allele frequency: 4.836135605242371e-5
allele num: 62033
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.673+25C>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.799+25C>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.799+25C>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.799+25C>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.799+25C>T
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-64749458-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749458
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749458
    reference: chr 0
allele count: 1
allele frequency: 1.532191340054546e-5
allele num: 65266
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.799+16G>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.673+16G>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.799+16G>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.799+16G>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.799+16G>C
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 17032
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 369
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

X-64749459-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749459
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749459
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 65759
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.799+15G>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.799+15G>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.673+15G>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.799+15G>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.799+15G>A
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 7556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

X-64749464-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749464
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749464
    reference: chr 0
allele count: 2
allele frequency: 2.933755794167693e-5
allele num: 68172
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.673+10T>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.799+10T>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.799+10T>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.799+10T>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.799+10T>C
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2172
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

X-64749508-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749508
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749508
    reference: chr 0
allele count: 3
allele frequency: 3.486709824386049e-5
allele num: 86041
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.765T>C
  hgvsp: ENST00000374807.5:c.765T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.765T>C
  hgvsp: ENST00000374811.3:c.765T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.765T>C
  hgvsp: ENST00000484069.1:c.765T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.639T>C
  hgvsp: ENST00000374804.5:c.639T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.765T>C
  hgvsp: ENST00000312391.8:c.765T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
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genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
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genotype depth: GenotypeDepth
  all individuals: 197
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 97
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genotype depth: GenotypeDepth
  all individuals: 573
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39240
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1284
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genotype quality: GenotypeQuality
  all individuals: 26
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genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2178
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 284
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 46675
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genotype quality: GenotypeQuality
  all individuals: 379
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4878
  bin: 6.75e1
  variant carriers: 0
hgvs: p.His255His
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

X-64749519-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749519
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749519
    reference: chr 0
allele count: 1
allele frequency: 1.14740743290535e-5
allele num: 87153
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.754G>A
  hgvsp: ENSP00000363940.5:p.Val252Met
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.628G>A
  hgvsp: ENSP00000363937.5:p.Val210Met
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.754G>A
  hgvsp: ENSP00000473471.1:p.Val252Met
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.754G>A
  hgvsp: ENSP00000308649.8:p.Val252Met
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.754G>A
  hgvsp: ENSP00000363944.3:p.Val252Met
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3857
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5009
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2178
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 297
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genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val252Met
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-64749525-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749525
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749525
    reference: chr 0
allele count: 3
allele frequency: 3.430257154944716e-5
allele num: 87457
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.748G>A
  hgvsp: ENSP00000473471.1:p.Glu250Lys
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.748G>A
  hgvsp: ENSP00000363940.5:p.Glu250Lys
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.748G>A
  hgvsp: ENSP00000363944.3:p.Glu250Lys
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.622G>A
  hgvsp: ENSP00000363937.5:p.Glu208Lys
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.748G>A
  hgvsp: ENSP00000308649.8:p.Glu250Lys
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3899
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 91
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2177
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  variant carriers: 3
hgvs: p.Glu250Lys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD

X-64749526-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749526
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749526
    reference: chr 0
allele count: 1
allele frequency: 1.142778780883597e-5
allele num: 87506
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.621C>T
  hgvsp: ENST00000374804.5:c.621C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.747C>T
  hgvsp: ENST00000374811.3:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.747C>T
  hgvsp: ENST00000374807.5:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.747C>T
  hgvsp: ENST00000312391.8:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.747C>T
  hgvsp: ENST00000484069.1:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 200
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 529
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5057
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2177
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48800
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser249Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

X-64749530-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749530
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749530
    reference: chr 0
allele count: 1
allele frequency: 1.14100545400607e-5
allele num: 87642
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.743G>T
  hgvsp: ENSP00000363940.5:p.Gly248Val
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.743G>T
  hgvsp: ENSP00000308649.8:p.Gly248Val
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.743G>T
  hgvsp: ENSP00000473471.1:p.Gly248Val
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.617G>T
  hgvsp: ENSP00000363937.5:p.Gly206Val
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.743G>T
  hgvsp: ENSP00000363944.3:p.Gly248Val
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2176
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5095
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49065
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly248Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

X-64749534-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749534
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749534
    reference: chr 0
allele count: 1
allele frequency: 1.14056298188786e-5
allele num: 87676
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.739A>G
  hgvsp: ENSP00000308649.8:p.Lys247Glu
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.739A>G
  hgvsp: ENSP00000363940.5:p.Lys247Glu
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.739A>G
  hgvsp: ENSP00000473471.1:p.Lys247Glu
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.739A>G
  hgvsp: ENSP00000363944.3:p.Lys247Glu
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.613A>G
  hgvsp: ENSP00000363937.5:p.Lys205Glu
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5120
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Lys247Glu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP

X-64749536-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749536
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749536
    reference: chr 0
allele count: 1
allele frequency: 1.140315867495296e-5
allele num: 87695
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.611G>C
  hgvsp: ENSP00000363937.5:p.Ser204Thr
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.737G>C
  hgvsp: ENSP00000308649.8:p.Ser246Thr
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.737G>C
  hgvsp: ENSP00000363940.5:p.Ser246Thr
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.737G>C
  hgvsp: ENSP00000473471.1:p.Ser246Thr
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.737G>C
  hgvsp: ENSP00000363944.3:p.Ser246Thr
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1349
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
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genotype quality: GenotypeQuality
  all individuals: 2176
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 738
  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1327
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser246Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

X-64749542-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749542
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749542
    reference: chr 0
allele count: 1
allele frequency: 1.139925904816187e-5
allele num: 87725
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.731G>A
  hgvsp: ENSP00000308649.8:p.Gly244Glu
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.731G>A
  hgvsp: ENSP00000473471.1:p.Gly244Glu
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.605G>A
  hgvsp: ENSP00000363937.5:p.Gly202Glu
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.731G>A
  hgvsp: ENSP00000363940.5:p.Gly244Glu
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.731G>A
  hgvsp: ENSP00000363944.3:p.Gly244Glu
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5141
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49218
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2176
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Gly244Glu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

X-64749546-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749546
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749546
    reference: chr 0
allele count: 1
allele frequency: 1.13986093696569e-5
allele num: 87730
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.601G>A
  hgvsp: ENSP00000363937.5:p.Asp201Asn
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.727G>A
  hgvsp: ENSP00000363944.3:p.Asp243Asn
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.727G>A
  hgvsp: ENSP00000363940.5:p.Asp243Asn
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.727G>A
  hgvsp: ENSP00000308649.8:p.Asp243Asn
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.727G>A
  hgvsp: ENSP00000473471.1:p.Asp243Asn
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49238
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5145
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp243Asn
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-64749547-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749547
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749547
    reference: chr 0
allele count: 1
allele frequency: 1.139769994415127e-5
allele num: 87737
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.600C>T
  hgvsp: ENST00000374804.5:c.600C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.726C>T
  hgvsp: ENST00000374811.3:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.726C>T
  hgvsp: ENST00000374807.5:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.726C>T
  hgvsp: ENST00000312391.8:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.726C>T
  hgvsp: ENST00000484069.1:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49248
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala242Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP

X-64749556-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749556
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749556
    reference: chr 0
allele count: 3
allele frequency: 3.418803418803419e-5
allele num: 87750
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.717T>C
  hgvsp: ENST00000374811.3:c.717T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.717T>C
  hgvsp: ENST00000374807.5:c.717T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.717T>C
  hgvsp: ENST00000312391.8:c.717T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.591T>C
  hgvsp: ENST00000374804.5:c.591T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.717T>C
  hgvsp: ENST00000484069.1:c.717T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2177
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49281
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 5149
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp239Asp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

X-64749558-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749558
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749558
    reference: chr 0
allele count: 4
allele frequency: 4.558456506626856e-5
allele num: 87749
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.715G>T
  hgvsp: ENSP00000473471.1:p.Asp239Tyr
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.715G>T
  hgvsp: ENSP00000363944.3:p.Asp239Tyr
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.589G>T
  hgvsp: ENSP00000363937.5:p.Asp197Tyr
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.715G>T
  hgvsp: ENSP00000363940.5:p.Asp239Tyr
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.715G>T
  hgvsp: ENSP00000308649.8:p.Asp239Tyr
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2178
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5150
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Asp239Tyr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

X-64749564-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749564
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749564
    reference: chr 0
allele count: 2
allele frequency: 2.279202279202279e-5
allele num: 87750
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.709G>A
  hgvsp: ENSP00000473471.1:p.Glu237Lys
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.709G>A
  hgvsp: ENSP00000363944.3:p.Glu237Lys
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.709G>A
  hgvsp: ENSP00000308649.8:p.Glu237Lys
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.709G>A
  hgvsp: ENSP00000363940.5:p.Glu237Lys
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.583G>A
  hgvsp: ENSP00000363937.5:p.Glu195Lys
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39968
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genotype depth: GenotypeDepth
  all individuals: 199
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genotype depth: GenotypeDepth
  all individuals: 335
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genotype depth: GenotypeDepth
  all individuals: 123
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genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 92
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genotype depth: GenotypeDepth
  all individuals: 72
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genotype quality: GenotypeQuality
  all individuals: 9
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
  all individuals: 49282
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genotype quality: GenotypeQuality
  all individuals: 290
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5152
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 735
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genotype quality: GenotypeQuality
  all individuals: 2176
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu237Lys
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

X-64749565-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749565
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749565
    reference: chr 0
allele count: 8
allele frequency: 9.116705222732505e-5
allele num: 87751
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.582G>A
  hgvsp: ENST00000374804.5:c.582G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.708G>A
  hgvsp: ENST00000312391.8:c.708G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.708G>A
  hgvsp: ENST00000374811.3:c.708G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.708G>A
  hgvsp: ENST00000374807.5:c.708G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.708G>A
  hgvsp: ENST00000484069.1:c.708G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
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genotype depth: GenotypeDepth
  all individuals: 91
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genotype depth: GenotypeDepth
  all individuals: 532
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  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1026
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genotype depth: GenotypeDepth
  all individuals: 13327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr236Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

X-64749566-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749566
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749566
    reference: chr 0
allele count: 10
allele frequency: 1.139575166377974e-4
allele num: 87752
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.707C>T
  hgvsp: ENSP00000308649.8:p.Thr236Met
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.581C>T
  hgvsp: ENSP00000363937.5:p.Thr194Met
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.707C>T
  hgvsp: ENSP00000363944.3:p.Thr236Met
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.707C>T
  hgvsp: ENSP00000473471.1:p.Thr236Met
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.707C>T
  hgvsp: ENSP00000363940.5:p.Thr236Met
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39960
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genotype depth: GenotypeDepth
  all individuals: 3937
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
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genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 534
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  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 97
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genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 3.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 8
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genotype quality: GenotypeQuality
  all individuals: 735
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr236Met
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ

X-64749569-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749569
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749569
    reference: chr 0
allele count: 1
allele frequency: 1.139562180210363e-5
allele num: 87753
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.704G>A
  hgvsp: ENSP00000363940.5:p.Ser235Asn
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.704G>A
  hgvsp: ENSP00000308649.8:p.Ser235Asn
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.704G>A
  hgvsp: ENSP00000363944.3:p.Ser235Asn
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.578G>A
  hgvsp: ENSP00000363937.5:p.Ser193Asn
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.704G>A
  hgvsp: ENSP00000473471.1:p.Ser235Asn
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49287
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser235Asn
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

X-64749582-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749582
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749582
    reference: chr 0
allele count: 2
allele frequency: 2.279020476998986e-5
allele num: 87757
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.691G>C
  hgvsp: ENSP00000473471.1:p.Asp231His
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.565G>C
  hgvsp: ENSP00000363937.5:p.Asp189His
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.691G>C
  hgvsp: ENSP00000363944.3:p.Asp231His
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.691G>C
  hgvsp: ENSP00000308649.8:p.Asp231His
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.691G>C
  hgvsp: ENSP00000363940.5:p.Asp231His
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 570
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
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genotype depth: GenotypeDepth
  all individuals: 97
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genotype depth: GenotypeDepth
  all individuals: 3937
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 5158
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2176
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 49293
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genotype quality: GenotypeQuality
  all individuals: 736
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp231His
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum

X-64749587-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749587
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749587
    reference: chr 0
allele count: 1
allele frequency: 1.139510238499493e-5
allele num: 87757
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.686C>T
  hgvsp: ENSP00000308649.8:p.Pro229Leu
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.686C>T
  hgvsp: ENSP00000363944.3:p.Pro229Leu
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.686C>T
  hgvsp: ENSP00000473471.1:p.Pro229Leu
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.560C>T
  hgvsp: ENSP00000363937.5:p.Pro187Leu
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.686C>T
  hgvsp: ENSP00000363940.5:p.Pro229Leu
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2175
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro229Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

X-64749599-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749599
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749599
    reference: chr 0
allele count: 1
allele frequency: 1.139484269419661e-5
allele num: 87759
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.548A>G
  hgvsp: ENSP00000363937.5:p.Gln183Arg
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.674A>G
  hgvsp: ENSP00000308649.8:p.Gln225Arg
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.674A>G
  hgvsp: ENSP00000363944.3:p.Gln225Arg
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.674A>G
  hgvsp: ENSP00000473471.1:p.Gln225Arg
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.674A>G
  hgvsp: ENSP00000363940.5:p.Gln225Arg
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39960
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49294
  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 7.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 7.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 736
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln225Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

X-64749601-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749601
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749601
    reference: chr 0
allele count: 2
allele frequency: 2.278968538839321e-5
allele num: 87759
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.546A>G
  hgvsp: ENST00000374804.5:c.546A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.672A>G
  hgvsp: ENST00000374811.3:c.672A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.672A>G
  hgvsp: ENST00000374807.5:c.672A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.672A>G
  hgvsp: ENST00000312391.8:c.672A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.672A>G
  hgvsp: ENST00000484069.1:c.672A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 570
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genotype depth: GenotypeDepth
  all individuals: 119
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1024
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genotype depth: GenotypeDepth
  all individuals: 107
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5157
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu224Glu
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-64749606-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749606
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749606
    reference: chr 0
allele count: 1
allele frequency: 1.139484269419661e-5
allele num: 87759
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.667A>C
  hgvsp: ENSP00000363940.5:p.Thr223Pro
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.667A>C
  hgvsp: ENSP00000363944.3:p.Thr223Pro
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.667A>C
  hgvsp: ENSP00000308649.8:p.Thr223Pro
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.541A>C
  hgvsp: ENSP00000363937.5:p.Thr181Pro
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.667A>C
  hgvsp: ENSP00000473471.1:p.Thr223Pro
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39957
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 737
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  variant carriers: 0
hgvs: p.Thr223Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

X-64749608-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749608
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749608
    reference: chr 0
allele count: 2
allele frequency: 2.278968538839321e-5
allele num: 87759
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.539T>A
  hgvsp: ENSP00000363937.5:p.Ile180Asn
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.665T>A
  hgvsp: ENSP00000473471.1:p.Ile222Asn
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.665T>A
  hgvsp: ENSP00000363940.5:p.Ile222Asn
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.665T>A
  hgvsp: ENSP00000363944.3:p.Ile222Asn
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.665T>A
  hgvsp: ENSP00000308649.8:p.Ile222Asn
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
hgvs: p.Ile222Asn
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

X-64749610-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749610
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749610
    reference: chr 0
allele count: 2
allele frequency: 2.278968538839321e-5
allele num: 87759
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.663C>T
  hgvsp: ENST00000312391.8:c.663C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.663C>T
  hgvsp: ENST00000484069.1:c.663C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.537C>T
  hgvsp: ENST00000374804.5:c.537C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.663C>T
  hgvsp: ENST00000374807.5:c.663C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.663C>T
  hgvsp: ENST00000374811.3:c.663C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13344
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
hgvs: p.Asp221Asp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

X-64749625-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749625
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749625
    reference: chr 0
allele count: 1
allele frequency: 1.139458301523456e-5
allele num: 87761
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.648C>T
  hgvsp: ENST00000312391.8:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.648C>T
  hgvsp: ENST00000484069.1:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.648C>T
  hgvsp: ENST00000374811.3:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.522C>T
  hgvsp: ENST00000374804.5:c.522C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.648C>T
  hgvsp: ENST00000374807.5:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5157
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49297
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn216Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

X-64749627-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749627
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749627
    reference: chr 0
allele count: 2
allele frequency: 2.278916603046912e-5
allele num: 87761
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.520A>G
  hgvsp: ENSP00000363937.5:p.Asn174Asp
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.646A>G
  hgvsp: ENSP00000363944.3:p.Asn216Asp
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.646A>G
  hgvsp: ENSP00000473471.1:p.Asn216Asp
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.646A>G
  hgvsp: ENSP00000308649.8:p.Asn216Asp
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.646A>G
  hgvsp: ENSP00000363940.5:p.Asn216Asp
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 93
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genotype depth: GenotypeDepth
  all individuals: 39955
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 527
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genotype depth: GenotypeDepth
  all individuals: 97
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 49298
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 1324
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1344
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn216Asp
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-64749634-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749634
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749634
    reference: chr 0
allele count: 1
allele frequency: 1.139458301523456e-5
allele num: 87761
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.639A>G
  hgvsp: ENST00000484069.1:c.639A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.639A>G
  hgvsp: ENST00000374811.3:c.639A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.513A>G
  hgvsp: ENST00000374804.5:c.513A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.639A>G
  hgvsp: ENST00000374807.5:c.639A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.639A>G
  hgvsp: ENST00000312391.8:c.639A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
  all individuals: 570
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 123
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genotype depth: GenotypeDepth
  all individuals: 527
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 7.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 1325
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 378
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genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu213Glu
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD

X-64749653-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749653
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749653
    reference: chr 0
allele count: 1
allele frequency: 1.139445318019188e-5
allele num: 87762
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.494A>G
  hgvsp: ENSP00000363937.5:p.Glu165Gly
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.620A>G
  hgvsp: ENSP00000363944.3:p.Glu207Gly
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.620A>G
  hgvsp: ENSP00000363940.5:p.Glu207Gly
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.620A>G
  hgvsp: ENSP00000473471.1:p.Glu207Gly
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.620A>G
  hgvsp: ENSP00000308649.8:p.Glu207Gly
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13348
  bin: 2.75e1
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genotype depth: GenotypeDepth
  all individuals: 119
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genotype depth: GenotypeDepth
  all individuals: 109
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2
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genotype depth: GenotypeDepth
  all individuals: 527
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genotype quality: GenotypeQuality
  all individuals: 0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1325
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 49295
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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genotype quality: GenotypeQuality
  all individuals: 736
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genotype quality: GenotypeQuality
  all individuals: 1345
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genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu207Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD

X-64749655-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749655
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749655
    reference: chr 0
allele count: 1
allele frequency: 1.13947128532361e-5
allele num: 87760
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.618A>G
  hgvsp: ENSP00000363940.5:p.Ile206Met
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.492A>G
  hgvsp: ENSP00000363937.5:p.Ile164Met
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.618A>G
  hgvsp: ENSP00000363944.3:p.Ile206Met
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.618A>G
  hgvsp: ENSP00000473471.1:p.Ile206Met
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.618A>G
  hgvsp: ENSP00000308649.8:p.Ile206Met
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49295
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5155
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile206Met
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-64749680-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749680
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749680
    reference: chr 0
allele count: 1
allele frequency: 1.139614126656714e-5
allele num: 87749
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.593A>G
  hgvsp: ENSP00000363944.3:p.Glu198Gly
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.593A>G
  hgvsp: ENSP00000363940.5:p.Glu198Gly
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.593A>G
  hgvsp: ENSP00000308649.8:p.Glu198Gly
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.467A>G
  hgvsp: ENSP00000363937.5:p.Glu156Gly
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.593A>G
  hgvsp: ENSP00000473471.1:p.Glu198Gly
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39913
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3938
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 109
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1030
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genotype depth: GenotypeDepth
  all individuals: 108
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genotype depth: GenotypeDepth
  all individuals: 527
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genotype depth: GenotypeDepth
  all individuals: 120
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genotype depth: GenotypeDepth
  all individuals: 336
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genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6
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genotype quality: GenotypeQuality
  all individuals: 4
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5
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genotype quality: GenotypeQuality
  all individuals: 1345
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
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  variant carriers: 0
hgvs: p.Glu198Gly
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD

X-64749698-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749698
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749698
    reference: chr 0
allele count: 2
allele frequency: 2.280137720318307e-5
allele num: 87714
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.575G>A
  hgvsp: ENSP00000308649.8:p.Ser192Asn
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.449G>A
  hgvsp: ENSP00000363937.5:p.Ser150Asn
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.575G>A
  hgvsp: ENSP00000363944.3:p.Ser192Asn
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.575G>A
  hgvsp: ENSP00000363940.5:p.Ser192Asn
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.575G>A
  hgvsp: ENSP00000473471.1:p.Ser192Asn
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
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genotype depth: GenotypeDepth
  all individuals: 13355
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39790
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 526
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser192Asn
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

X-64749700-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749700
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749700
    reference: chr 0
allele count: 1
allele frequency: 1.140484934194019e-5
allele num: 87682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.573C>T
  hgvsp: ENST00000484069.1:c.573C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.573C>T
  hgvsp: ENST00000312391.8:c.573C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.573C>T
  hgvsp: ENST00000374807.5:c.573C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.573C>T
  hgvsp: ENST00000374811.3:c.573C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.447C>T
  hgvsp: ENST00000374804.5:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 107
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13354
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genotype depth: GenotypeDepth
  all individuals: 199
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 91
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genotype depth: GenotypeDepth
  all individuals: 3953
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
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genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 375
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 32
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn191Asn
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS

X-64749703-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749703
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749703
    reference: chr 0
allele count: 1
allele frequency: 1.140771161305042e-5
allele num: 87660
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.570G>A
  hgvsp: ENST00000374807.5:c.570G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.570G>A
  hgvsp: ENST00000374811.3:c.570G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.570G>A
  hgvsp: ENST00000312391.8:c.570G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.444G>A
  hgvsp: ENST00000374804.5:c.444G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.570G>A
  hgvsp: ENST00000484069.1:c.570G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49002
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5139
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu190Glu
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

X-64749714-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749714
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749714
    reference: chr 0
allele count: 3
allele frequency: 3.428728170430648e-5
allele num: 87496
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.559C>T
  hgvsp: ENSP00000363940.5:p.Arg187Cys
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.559C>T
  hgvsp: ENSP00000363944.3:p.Arg187Cys
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.559C>T
  hgvsp: ENSP00000308649.8:p.Arg187Cys
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.559C>T
  hgvsp: ENSP00000473471.1:p.Arg187Cys
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.433C>T
  hgvsp: ENSP00000363937.5:p.Arg145Cys
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
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genotype depth: GenotypeDepth
  all individuals: 72
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 375
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genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 433
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5079
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genotype quality: GenotypeQuality
  all individuals: 88
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
  all individuals: 48463
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg187Cys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

X-64749717-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749717
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749717
    reference: chr 0
allele count: 4
allele frequency: 4.572996455927746e-5
allele num: 87470
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.556T>C
  hgvsp: ENSP00000473471.1:p.Cys186Arg
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.556T>C
  hgvsp: ENSP00000363944.3:p.Cys186Arg
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.556T>C
  hgvsp: ENSP00000308649.8:p.Cys186Arg
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.430T>C
  hgvsp: ENSP00000363937.5:p.Cys144Arg
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.556T>C
  hgvsp: ENSP00000363940.5:p.Cys186Arg
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3990
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 481
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2171
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  variant carriers: 4
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 69
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Cys186Arg
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

X-64749722-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749722
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749722
    reference: chr 0
allele count: 1
allele frequency: 1.145081873353945e-5
allele num: 87330
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.551A>T
  hgvsp: ENSP00000363944.3:p.Tyr184Phe
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.551A>T
  hgvsp: ENSP00000473471.1:p.Tyr184Phe
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.551A>T
  hgvsp: ENSP00000363940.5:p.Tyr184Phe
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.551A>T
  hgvsp: ENSP00000308649.8:p.Tyr184Phe
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.425A>T
  hgvsp: ENSP00000363937.5:p.Tyr142Phe
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3979
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 97
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genotype quality: GenotypeQuality
  all individuals: 714
  bin: 8.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Tyr184Phe
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP

X-64749742-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749742
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749742
    reference: chr 0
allele count: 1
allele frequency: 1.159716101498353e-5
allele num: 86228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.405G>A
  hgvsp: ENST00000374804.5:c.405G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.531G>A
  hgvsp: ENST00000484069.1:c.531G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.531G>A
  hgvsp: ENST00000374807.5:c.531G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.531G>A
  hgvsp: ENST00000374811.3:c.531G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.531G>A
  hgvsp: ENST00000312391.8:c.531G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2741
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45460
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu177Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD

X-64749763-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749763
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749762
    reference: chr 0
allele count: 1
allele frequency: 1.19703136222169e-5
allele num: 83540
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.515-6delC
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.389-6delC
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.515-6delC
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.515-6delC
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.515-6delC
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30600
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6733
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7810
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36991
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
hgvs: c.515-6delC
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: AG
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

X-64749763-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749763
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749763
    reference: chr 0
allele count: 3
allele frequency: 3.591094086665071e-5
allele num: 83540
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.389-5T>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.515-5T>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.515-5T>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.515-5T>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.515-5T>C
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6733
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3266
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7810
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
hgvs: c.515-5T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

X-64749765-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749765
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749765
    reference: chr 0
allele count: 2
allele frequency: 2.398167799800952e-5
allele num: 83397
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.515-7C>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.515-7C>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.389-7C>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.515-7C>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.515-7C>T
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11182
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8254
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4176
  bin: 6.75e1
  variant carriers: 0
hgvs: c.515-7C>T
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

X-64749765-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749765
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749765
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 83397
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.515-7C>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.389-7C>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.515-7C>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.515-7C>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.515-7C>G
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: splice region
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 1800
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 351
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 667
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 273
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genotype quality: GenotypeQuality
  all individuals: 36917
  bin: 6.25e1
  variant carriers: 0
hgvs: c.515-7C>G
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

X-64749765-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749765
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749765
    reference: chr 0
allele count: 1
allele frequency: 1.199083899900476e-5
allele num: 83397
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.515-7C>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.389-7C>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.515-7C>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.515-7C>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.515-7C>A
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 121
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  variant carriers: 0
hgvs: c.515-7C>A
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD

X-64749769-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749769
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749769
    reference: chr 0
allele count: 2
allele frequency: 2.412254251598119e-5
allele num: 82910
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.515-11C>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.515-11C>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.389-11C>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.515-11C>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.515-11C>A
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8542
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

X-64749771-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749771
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749771
    reference: chr 0
allele count: 6
allele frequency: 7.258825522030536e-5
allele num: 82658
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.515-13T>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.389-13T>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.515-13T>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.515-13T>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.515-13T>A
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-64749779-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749779
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749779
    reference: chr 0
allele count: 2
allele frequency: 2.446483180428135e-5
allele num: 81750
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.389-21T>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.515-21T>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.515-21T>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.515-21T>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.515-21T>G
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2908
  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2161
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2739
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29768
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-64749781-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749781
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749781
    reference: chr 0
allele count: 3
allele frequency: 3.685005711758853e-5
allele num: 81411
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.389-23A>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.515-23A>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.515-23A>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.515-23A>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.515-23A>G
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

X-64749787-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064749787
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064749787
    reference: chr 0
allele count: 1
allele frequency: 1.244539582581424e-5
allele num: 80351
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.515-29T>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.515-29T>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.389-29T>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.515-29T>C
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.515-29T>C
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18562
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 698
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ

X-64751190-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064751190
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064751190
    reference: chr 0
allele count: 1
allele frequency: 1.156898586269928e-5
allele num: 86438
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.514+47G>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.514+47G>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.514+47G>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.388+47G>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.514+47G>T
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13253
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6590
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9598
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD

X-64751192-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064751192
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064751192
    reference: chr 0
allele count: 1
allele frequency: 1.156363468165314e-5
allele num: 86478
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.514+45C>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.388+45C>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.514+45C>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.514+45C>T
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.514+45C>T
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2714
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20890
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2213
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5736
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-64751193-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064751193
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064751193
    reference: chr 0
allele count: 1
allele frequency: 1.156416957698268e-5
allele num: 86474
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.514+44C>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.514+44C>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.388+44C>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.514+44C>A
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.514+44C>A
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13364
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2212
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5724
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3030
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21225
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2022
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2701
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD

X-64751204-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064751204
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064751204
    reference: chr 0
allele count: 1
allele frequency: 1.154174649707994e-5
allele num: 86642
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.514+33A>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.514+33A>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.388+33A>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.514+33A>G
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.514+33A>G
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2206
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2962
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2648
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5719
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

X-64751209-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24064751209
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24064751210
    reference: chr 0
allele count: 1
allele frequency: 1.152937107280798e-5
allele num: 86735
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000308649
  ensembl transcript: ENST00000312391
  gene symbol: LAS1L
  hgvsc: ENST00000312391.8:c.514+27dupA
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363937
  ensembl transcript: ENST00000374804
  gene symbol: LAS1L
  hgvsc: ENST00000374804.5:c.388+27dupA
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363944
  ensembl transcript: ENST00000374811
  gene symbol: LAS1L
  hgvsc: ENST00000374811.3:c.514+27dupA
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000473471
  ensembl transcript: ENST00000484069
  gene symbol: LAS1L
  hgvsc: ENST00000484069.1:c.514+27dupA
  variant of: http://identifiers.org/hgnc/25726
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001497
  ensembl protein: ENSP00000363940
  ensembl transcript: ENST00000374807
  gene symbol: LAS1L
  hgvsc: ENST00000374807.5:c.514+27dupA
  variant of: http://identifiers.org/hgnc/25726
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 236
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2463
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8934
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19971
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4467
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1023
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.952e1

DP
type: SiteQuality
SIO_000300: 7.14473e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.52e-2

GenotypeQuality
all individuals: 245
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3963
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4019
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 206
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 726
bin: 6.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1094
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 2.740664611168208e-3
allele num: 2919
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 8.113956004327443e-4
allele num: 11092
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 6.557377049180328e-3
allele num: 305
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.1893e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.021e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.86e-1

DP
type: SiteQuality
SIO_000300: 5.22028e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.08e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.327e1

MQ
type: SiteQuality
SIO_000300: 5.93e1

QD
type: SiteQuality
SIO_000300: 1.3e0

GenotypeQuality
all individuals: 2711
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 299
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3607
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9327
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.625815808556925e-4
allele num: 2758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 221
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 759
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.29e-2

FS
type: SiteQuality
SIO_000300: 6.003e0

QD
type: SiteQuality
SIO_000300: 1.465e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.247e0

MQRankSum
type: SiteQuality
SIO_000300: 9.87e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

DP
type: SiteQuality
SIO_000300: 4.34952e5

GenotypeQuality
all individuals: 1951
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5802
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1189
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2519
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4361
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.526717557251908e-4
allele num: 6550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9126
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9327
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46701
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.27e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQ
type: SiteQuality
SIO_000300: 5.489e1

VQSLOD
type: SiteQuality
SIO_000300: -5.498e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.74e-1

QD
type: SiteQuality
SIO_000300: 2.571e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

DP
type: SiteQuality
SIO_000300: 1.695718e6

GenotypeQuality
all individuals: 1058
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1390
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5787
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4367
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9138
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.139128946692907e-5
allele num: 46748
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 603
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.14e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.9e-3

DP
type: SiteQuality
SIO_000300: 1.72494e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.909e1

GenotypeQuality
all individuals: 1944
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 730
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2472
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 452
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.283779446691058e-4
allele num: 46737
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9138
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 603
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.37e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.24e-1

FS
type: SiteQuality
SIO_000300: 1.853e0

QD
type: SiteQuality
SIO_000300: 1.434e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.057e0

MQRankSum
type: SiteQuality
SIO_000300: -2.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 1.726285e6

GenotypeQuality
all individuals: 729
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5786
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3658
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9143
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 603
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9301
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.139495079161318e-5
allele num: 46740
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.800000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.78e-1

DP
type: SiteQuality
SIO_000300: 1.729699e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.03e0

GenotypeQuality
all individuals: 729
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1663
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5786
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31415
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1147
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 603
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.093732910423275e-4
allele num: 9143
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9301
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-2

QD
type: SiteQuality
SIO_000300: 9.800000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 2.03e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.67e-1

DP
type: SiteQuality
SIO_000300: 1.729699e6

MQ
type: SiteQuality
SIO_000300: 5.919e1

GenotypeQuality
all individuals: 311
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5793
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1628
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5779
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 33482
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9157
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.136843454848498e-5
allele num: 46798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4372
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.521606816798539e-4
allele num: 6572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 603
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.81e-1

QD
type: SiteQuality
SIO_000300: 1.531e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.58e-2

FS
type: SiteQuality
SIO_000300: 2.417e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.754352e6

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3809
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33878
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9151
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.135930624973301e-5
allele num: 46818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4370
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.53e-1

QD
type: SiteQuality
SIO_000300: 1.363e1

DP
type: SiteQuality
SIO_000300: 1.754923e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -9.7e-2

FS
type: SiteQuality
SIO_000300: 2.303e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.658e0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
all individuals: 411
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2402
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34211
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.095890410958904e-4
allele num: 9125
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6565
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46742
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.766e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.749496e6

VQSLOD
type: SiteQuality
SIO_000300: -1.632e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.93e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 714
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1899
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1613
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5771
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8303
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.094451132756922e-4
allele num: 9137
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46701
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9087
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4357
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.722e0

VQSLOD
type: SiteQuality
SIO_000300: -2.604e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.36e-1

QD
type: SiteQuality
SIO_000300: 1.27e0

DP
type: SiteQuality
SIO_000300: 1.746889e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.43e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeQuality
all individuals: 1558
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28833
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4988
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5766
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9030
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8525
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.180359323216466e-5
allele num: 45864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4283
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6511
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 587
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.459e1

MQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

DP
type: SiteQuality
SIO_000300: 1.671179e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

FS
type: SiteQuality
SIO_000300: 3.043e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.754e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1526
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4140
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19470
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.22197533607377e-5
allele num: 45005
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8917
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4201
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8016
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.116235587410408e-4
allele num: 6418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.111e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 4.659e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.47e-1

DP
type: SiteQuality
SIO_000300: 1.54263e6

MQ
type: SiteQuality
SIO_000300: 5.915e1

GenotypeQuality
all individuals: 3474
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1462
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5747
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12164
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8823
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7581
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4150
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8071
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.251288862873995e-5
allele num: 44419
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.222e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

DP
type: SiteQuality
SIO_000300: 1.461713e6

MQ
type: SiteQuality
SIO_000300: 5.777e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.605e0

GenotypeQuality
all individuals: 338
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6703
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variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1866
bin: 5.25e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 537
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7026
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43208
num of homozygotes: 0

African
type: Population
allele count: 38
allele frequency: 4.778672032193159e-3
allele num: 7952
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 8.093421204763557e-4
allele num: 8649
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.04e-2

DP
type: SiteQuality
SIO_000300: 1.398431e6

QD
type: SiteQuality
SIO_000300: 1.585e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.55e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 770
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 349
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GenotypeQuality
all individuals: 2125
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7098
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4679
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2575
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33788
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.613e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

QD
type: SiteQuality
SIO_000300: 1.49e1

MQRankSum
type: SiteQuality
SIO_000300: -2.06e-1

FS
type: SiteQuality
SIO_000300: 3.079e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.68165e5

GenotypeQuality
all individuals: 11689
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4185
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variant carriers: 0

GenotypeQuality
all individuals: 2167
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 1.529987760097919e-4
allele num: 6536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33962
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5051
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 415
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2594
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.578e0

FS
type: SiteQuality
SIO_000300: 2.396e0

MQ
type: SiteQuality
SIO_000300: 5.897e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-3

QD
type: SiteQuality
SIO_000300: 1.43e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.85135e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.3e-2

GenotypeQuality
all individuals: 596
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2166
bin: 9.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2597
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variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34283
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6644
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.936108422071636e-4
allele num: 5165
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7165
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.59e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.291e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

DP
type: SiteQuality
SIO_000300: 1.018131e6

GenotypeQuality
all individuals: 1012
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3888
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 867
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variant carriers: 0

GenotypeQuality
all individuals: 359
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variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.488316713796696e-4
allele num: 6719
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 433
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4823
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2671
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.38792505204719e-4
allele num: 7205
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34630
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0389e1

QD
type: SiteQuality
SIO_000300: 5.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.014e0

DP
type: SiteQuality
SIO_000300: 1.036718e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.857e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQRankSum
type: SiteQuality
SIO_000300: -6.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

GenotypeQuality
all individuals: 604
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3745
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 359
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variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7235
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2686
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.886436521411054e-4
allele num: 5301
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.477323090559905e-4
allele num: 6769
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4847
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 431
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.876538948337361e-5
allele num: 34764
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.669999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

QD
type: SiteQuality
SIO_000300: 1.396e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

DP
type: SiteQuality
SIO_000300: 1.053195e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.63e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.746950884518185e-5
allele num: 36404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7247
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7457
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5751
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 453
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.938e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e0

MQRankSum
type: SiteQuality
SIO_000300: 2.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.8e-1

QD
type: SiteQuality
SIO_000300: 2.551e1

DP
type: SiteQuality
SIO_000300: 1.136941e6

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 522
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variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36643
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7327
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 453
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5821
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5143
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.092e0

DP
type: SiteQuality
SIO_000300: 1.145823e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.13e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.787e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.13e-1

FS
type: SiteQuality
SIO_000300: 9.709e0

QD
type: SiteQuality
SIO_000300: 1.818e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 555
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variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.275374551593163e-5
allele num: 37912
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3032
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.192653e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.6e-2

QD
type: SiteQuality
SIO_000300: 1.466e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.39e0

MQRankSum
type: SiteQuality
SIO_000300: 9.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 4.83e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 181
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GenotypeQuality
all individuals: 737
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6479
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.350819255683983e-5
allele num: 47238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8441
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.41e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-1

QD
type: SiteQuality
SIO_000300: 1.874e1

FS
type: SiteQuality
SIO_000300: 5.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.178e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-2

DP
type: SiteQuality
SIO_000300: 1.522708e6

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.075962986873252e-4
allele num: 9294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9983
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47755
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.64e0

QD
type: SiteQuality
SIO_000300: 1.701e1

VQSLOD
type: SiteQuality
SIO_000300: -2.509e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.545955e6

MQRankSum
type: SiteQuality
SIO_000300: 3.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.41e-1

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
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GenotypeQuality
all individuals: 5033
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10064
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.528581510232887e-4
allele num: 8502
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47883
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6611
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.54e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.417e0

VQSLOD
type: SiteQuality
SIO_000300: -6.186e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.12e-1

FS
type: SiteQuality
SIO_000300: 4.025e0

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

DP
type: SiteQuality
SIO_000300: 1.553576e6

MQ
type: SiteQuality
SIO_000300: 5.984e1

QD
type: SiteQuality
SIO_000300: 1.99e1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 257
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variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9307
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10078
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6621
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.087639088954302e-5
allele num: 47901
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.433e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.24e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.95e-1

QD
type: SiteQuality
SIO_000300: 1.337e1

DP
type: SiteQuality
SIO_000300: 1.554429e6

VQSLOD
type: SiteQuality
SIO_000300: 4.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085418752085419e-5
allele num: 47952
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10111
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.398e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

MQ
type: SiteQuality
SIO_000300: 5.928e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

FS
type: SiteQuality
SIO_000300: 7.45e-1

DP
type: SiteQuality
SIO_000300: 1.556519e6

VQSLOD
type: SiteQuality
SIO_000300: 5.83e-1

QD
type: SiteQuality
SIO_000300: 1.218e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.826e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49144
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1353
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085027418110548e-5
allele num: 47961
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.08e-1

FS
type: SiteQuality
SIO_000300: 1.441e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.682e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 1.557186e6

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 291
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variant carriers: 0

GenotypeQuality
all individuals: 49136
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10117
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.084636230977694e-5
allele num: 47970
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.557858e6

MQRankSum
type: SiteQuality
SIO_000300: 7.05e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.548e0

MQ
type: SiteQuality
SIO_000300: 5.926e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

FS
type: SiteQuality
SIO_000300: 1.838e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.68e-1

QD
type: SiteQuality
SIO_000300: 2.398e1

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 377
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 736
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variant carriers: 0

GenotypeQuality
all individuals: 1330
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.584786053882726e-3
allele num: 631
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47982
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.429999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.755e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.62e0

DP
type: SiteQuality
SIO_000300: 1.558199e6

MQ
type: SiteQuality
SIO_000300: 5.938e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.155e0

QD
type: SiteQuality
SIO_000300: 2.677e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.174812030075188e-4
allele num: 8512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.85e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.07e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47987
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10122
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e-1

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.68e-2

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.55864e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 6.251041840306718e-5
allele num: 47992
num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele num: 632
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -2.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.64e-2

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.926e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
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allele num: 10124
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47992
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.290924694271615e-4
allele num: 9322
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e-1

FS
type: SiteQuality
SIO_000300: 1.689e0

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
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BaseQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 2.145232221387965e-4
allele num: 9323
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
allele num: 10124
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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SIO_000300: -2.0e-2

DP
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 9.21e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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South Asian
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African
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Latino
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allele frequency: 1.072616110693983e-4
allele num: 9323
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East Asian
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allele frequency: 9.038867128653209e-4
allele num: 6638
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
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FS
type: SiteQuality
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VQSLOD
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ClippingRankSum
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MQ
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BaseQRankSum
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MQRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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East Asian
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allele frequency: 1.054534498342874e-3
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South Asian
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ReadPosRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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VQSLOD
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QD
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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QD
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DP
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FS
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VQSLOD
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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South Asian
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Other
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 4.167013917826485e-5
allele num: 47996
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MQ
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VQSLOD
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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FS
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InbreedingCoeff
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DP
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
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European (Non-Finnish)
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African
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South Asian
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East Asian
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Other
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FS
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DP
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QD
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VQSLOD
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MQ
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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Latino
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South Asian
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Other
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VQSLOD
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MQRankSum
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ReadPosRankSum
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DP
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MQ
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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Other
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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QD
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MQ
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DP
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FS
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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South Asian
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East Asian
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European (Finnish)
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African
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Other
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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MQ
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FS
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QD
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DP
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VQSLOD
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Other
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South Asian
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European (Finnish)
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Latino
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East Asian
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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MQ
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ClippingRankSum
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FS
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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European (Finnish)
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East Asian
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African
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South Asian
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MQ
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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FS
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ClippingRankSum
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QD
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SIO_000300: 1.023e1

DP
type: SiteQuality
SIO_000300: 1.559677e6

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 1345
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GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.877518767285657e-5
allele num: 10124
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.935e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.559281e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.06e-2

QD
type: SiteQuality
SIO_000300: 3.163e1

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

GenotypeQuality
all individuals: 5157
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.877518767285657e-5
allele num: 10124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083420142505938e-5
allele num: 47998
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.412e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.166e-1

QD
type: SiteQuality
SIO_000300: 1.966e1

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 1.559515e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e0

GenotypeQuality
all individuals: 735
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 49297
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083420142505938e-5
allele num: 47998
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.47e0

DP
type: SiteQuality
SIO_000300: 1.559361e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.272e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.35e-1

FS
type: SiteQuality
SIO_000300: 1.858e0

VQSLOD
type: SiteQuality
SIO_000300: 1.947e1

MQ
type: SiteQuality
SIO_000300: 5.944e1

QD
type: SiteQuality
SIO_000300: 2.364e1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 2174
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083376737015354e-5
allele num: 47999
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.37e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.559355e6

FS
type: SiteQuality
SIO_000300: 7.29e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

QD
type: SiteQuality
SIO_000300: 1.277e1

GenotypeQuality
all individuals: 736
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 377
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variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47999
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: 7.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e-1

FS
type: SiteQuality
SIO_000300: 6.862e0

DP
type: SiteQuality
SIO_000300: 1.559384e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.339e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e0

GenotypeQuality
all individuals: 736
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5153
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083810873325137e-5
allele num: 47989
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.026e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.27e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.559636e6

VQSLOD
type: SiteQuality
SIO_000300: 2.69e0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2172
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49147
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10121
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.175088131609871e-4
allele num: 8510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9315
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.08415831266543e-5
allele num: 47981
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

MQRankSum
type: SiteQuality
SIO_000300: 1.61e0

DP
type: SiteQuality
SIO_000300: 1.559351e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.17e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e0

VQSLOD
type: SiteQuality
SIO_000300: -3.446e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e-1

QD
type: SiteQuality
SIO_000300: 3.178e1

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 49092
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variant carriers: 0

GenotypeQuality
all individuals: 2170
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5137
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4515
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.881422924901186e-5
allele num: 10120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47965
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8505
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.217e1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.088e0

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.56e-1

DP
type: SiteQuality
SIO_000300: 1.558915e6

MQ
type: SiteQuality
SIO_000300: 5.942e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 730
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variant carriers: 0

GenotypeQuality
all individuals: 2173
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variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.507613447911955e-4
allele num: 6633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47961
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8499
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.215e1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

DP
type: SiteQuality
SIO_000300: 1.558216e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.76e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 64
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1342
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1301
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 8.25e1
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GenotypeQuality
all individuals: 2172
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6627
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.150768899881708e-4
allele num: 9299
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.178828244724744e-4
allele num: 8483
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47905
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

FS
type: SiteQuality
SIO_000300: 2.601e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.24e-1

QD
type: SiteQuality
SIO_000300: 1.317e1

DP
type: SiteQuality
SIO_000300: 1.554705e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.2e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.58e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
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variant carriers: 0

GenotypeQuality
all individuals: 5056
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10055
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8483
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4483
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.350382029977871e-5
allele num: 47902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9297
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.43e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.041e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.98e-2

QD
type: SiteQuality
SIO_000300: 1.291e1

DP
type: SiteQuality
SIO_000300: 1.554837e6

GenotypeQuality
all individuals: 48096
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6621
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8461
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.089602139752591e-5
allele num: 47856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10007
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.551e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

QD
type: SiteQuality
SIO_000300: 2.014e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.96e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.23e-1

FS
type: SiteQuality
SIO_000300: 2.514e0

DP
type: SiteQuality
SIO_000300: 1.550032e6

GenotypeQuality
all individuals: 4781
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9547
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4409
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47443
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.516760200212346e-4
allele num: 6593
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.53e-2

MQ
type: SiteQuality
SIO_000300: 5.959e1

VQSLOD
type: SiteQuality
SIO_000300: 4.0e-2

DP
type: SiteQuality
SIO_000300: 1.51584e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.1e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8209
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6495
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.16076058772688e-5
allele num: 46280
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9090
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.75e-1

QD
type: SiteQuality
SIO_000300: 2.294e1

MQRankSum
type: SiteQuality
SIO_000300: 5.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.62e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 3.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

DP
type: SiteQuality
SIO_000300: 1.412592e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8209
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.3003300330033e-4
allele num: 9090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6495
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.62e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.294e1

MQ
type: SiteQuality
SIO_000300: 5.948e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.412592e6

MQRankSum
type: SiteQuality
SIO_000300: 5.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.59e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4237
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9075
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.32816118072237e-5
allele num: 46209
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 583
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6487
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.908e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

DP
type: SiteQuality
SIO_000300: 1.405279e6

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.471e1

MQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.26e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6487
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 46209
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4237
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9075
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 583
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.405279e6

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.26e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.471e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.908e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 583
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6487
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.218026796589525e-4
allele num: 8210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4237
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9075
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46209
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.26e-2

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.471e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.546312045770836e-4
allele num: 6467
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.174905935318297e-5
allele num: 45979
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9047
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.72e1

MQ
type: SiteQuality
SIO_000300: 5.987e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 1.307531380753138e-4
allele num: 45888
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele num: 577
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6456
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9037
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8179
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4161
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.46e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

QD
type: SiteQuality
SIO_000300: 1.579e1

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.35e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8055
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European (Non-Finnish)
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allele count: 2
allele frequency: 4.396860641501968e-5
allele num: 45487
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4104
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
allele num: 8124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9001
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 569
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.622e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.2206e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.315982e6

MQRankSum
type: SiteQuality
SIO_000300: 2.34e0

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.19e-1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8098
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45329
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4081
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 8977
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.688232536333802e-4
allele num: 6399
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.396e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 360
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4018
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.229554980825827e-5
allele num: 44852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8025
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6351
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8930
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 557
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

DP
type: SiteQuality
SIO_000300: 1.247579e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.64e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-2

QD
type: SiteQuality
SIO_000300: 3.66e0

VQSLOD
type: SiteQuality
SIO_000300: -2.502e0

FS
type: SiteQuality
SIO_000300: 5.151e0

MQ
type: SiteQuality
SIO_000300: 5.913e1

GenotypeQuality
all individuals: 1102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2740
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3094
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8503
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.098900176307615e-5
allele num: 47644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9233
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.94e-2

DP
type: SiteQuality
SIO_000300: 2.288911e6

VQSLOD
type: SiteQuality
SIO_000300: 1.61e-1

QD
type: SiteQuality
SIO_000300: 3.102e1

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16336
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2044
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3052
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9260
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.074229240519927e-4
allele num: 9309
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47653
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6601
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.291392e6

QD
type: SiteQuality
SIO_000300: 1.118e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.7e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.02e-1

FS
type: SiteQuality
SIO_000300: 2.538e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.416e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.41e-1

GenotypeQuality
all individuals: 157
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16333
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 2.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9253
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.098459730557771e-5
allele num: 47654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

VQSLOD
type: SiteQuality
SIO_000300: -3.259e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.68e-2

DP
type: SiteQuality
SIO_000300: 2.292693e6

MQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.011e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.869e1

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16323
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 267
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23682
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9311
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8507
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9355
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6615
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.096304215667778e-5
allele num: 47703
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.703e1

MQ
type: SiteQuality
SIO_000300: 5.98e1

VQSLOD
type: SiteQuality
SIO_000300: -1.498e-1

DP
type: SiteQuality
SIO_000300: 2.309947e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.46e0

MQRankSum
type: SiteQuality
SIO_000300: 8.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4