X-140785734-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785734
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785734
    reference: chr 0
allele count: 1
allele frequency: 1.143719834389368e-5
allele num: 87434
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.182G>T
  hgvsp: ENSP00000359546.3:p.Arg61Ile
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg61Ile
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6630
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 1.073076510355188e-4
  allele num: 9319
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

X-140785739-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785739
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785739
    reference: chr 0
allele count: 10992
allele frequency: 1.277931499523333e-1
allele num: 86014
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.177T>G
  hgvsp: ENSP00000359546.3:p.Phe59Leu
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Phe59Leu
num of homozygotes: 2
population: Latino
  type: Population
  allele count: 1345
  allele frequency: 1.492288916010207e-1
  allele num: 9013
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 435
  allele frequency: 6.634131462559097e-2
  allele num: 6557
  num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

X-140785741-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785741
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785741
    reference: chr 0
allele count: 11017
allele frequency: 1.280153381361841e-1
allele num: 86060
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.175T>G
  hgvsp: ENSP00000359546.3:p.Phe59Val
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Phe59Val
num of homozygotes: 2
population: East Asian
  type: Population
  allele count: 436
  allele frequency: 6.641279512566642e-2
  allele num: 6565
  num of homozygotes: 0
population: African
  type: Population
  allele count: 1587
  allele frequency: 1.910897049969898e-1
  allele num: 8305
  num of homozygotes: 2
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

X-140785744-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785744
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785744
    reference: chr 0
allele count: 1
allele frequency: 1.143824491570013e-5
allele num: 87426
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.172A>G
  hgvsp: ENSP00000359546.3:p.Asn58Asp
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Asn58Asp
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6630
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8489
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP

X-140785745-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785745
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785745
    reference: chr 0
allele count: 1
allele frequency: 1.143876827343232e-5
allele num: 87422
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.171G>T
  hgvsp: ENSP00000359546.3:p.Arg57Ser
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg57Ser
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 9.936406995230525e-5
  allele num: 10064
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4489
  num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
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site quality: MQ

X-140785745-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785745
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785745
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 87422
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.171G>A
  hgvsp: ENST00000370515.3:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg57Arg
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 47803
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6630
  num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
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site quality: DP
site quality: MQ

X-140785746-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785746
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785746
    reference: chr 0
allele count: 5
allele frequency: 5.719514985129261e-5
allele num: 87420
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.170G>A
  hgvsp: ENSP00000359546.3:p.Arg57Lys
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3305
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Arg57Lys
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
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  allele frequency: 6.2758880381574e-5
  allele num: 47802
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population: East Asian
  type: Population
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  allele num: 6630
  num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

X-140785749-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785749
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785749
    reference: chr 0
allele count: 1
allele frequency: 1.143968426471429e-5
allele num: 87415
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.167G>A
  hgvsp: ENSP00000359546.3:p.Arg56Lys
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Arg56Lys
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
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  allele frequency: 2.09209397686144e-5
  allele num: 47799
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population: Latino
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population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff

X-140785754-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785754
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785754
    reference: chr 0
allele count: 1
allele frequency: 1.144007687731661e-5
allele num: 87412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.162C>A
  hgvsp: ENST00000370515.3:c.162C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg54Arg
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8483
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 47797
  num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ

X-140785755-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785755
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785755
    reference: chr 0
allele count: 2
allele frequency: 2.287989200690973e-5
allele num: 87413
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.161G>C
  hgvsp: ENSP00000359546.3:p.Arg54Pro
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg54Pro
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9317
  num of homozygotes: 0
population: Other
  type: Population
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  allele frequency: 0.0e0
  allele num: 631
  num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-140785755-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785755
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785755
    reference: chr 0
allele count: 2
allele frequency: 2.287989200690973e-5
allele num: 87413
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.161G>A
  hgvsp: ENSP00000359546.3:p.Arg54His
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg54His
num of homozygotes: 0
population: Other
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  allele frequency: 0.0e0
  allele num: 631
  num of homozygotes: 0
population: African
  type: Population
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  allele frequency: 0.0e0
  allele num: 8483
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

X-140785756-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785756
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785756
    reference: chr 0
allele count: 1
allele frequency: 1.144020775417282e-5
allele num: 87411
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.160C>T
  hgvsp: ENSP00000359546.3:p.Arg54Cys
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Arg54Cys
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.092181517668473e-5
  allele num: 47797
  num of homozygotes: 0
population: South Asian
  type: Population
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  allele frequency: 0.0e0
  allele num: 10064
  num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

X-140785756-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785756
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785756
    reference: chr 0
allele count: 9
allele frequency: 1.029618697875553e-4
allele num: 87411
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.160C>A
  hgvsp: ENSP00000359546.3:p.Arg54Ser
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Arg54Ser
num of homozygotes: 0
population: Latino
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  num of homozygotes: 0
population: East Asian
  type: Population
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  allele num: 6630
  num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum

X-140785757-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785757
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785757
    reference: chr 0
allele count: 1
allele frequency: 1.144033863402357e-5
allele num: 87410
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.159T>C
  hgvsp: ENST00000370515.3:c.159T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 36753
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  variant carriers: 1
hgvs: p.Val53Val
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9317
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6630
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

X-140785759-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785759
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785759
    reference: chr 0
allele count: 3
allele frequency: 3.432062326251845e-5
allele num: 87411
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.157G>T
  hgvsp: ENSP00000359546.3:p.Val53Phe
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 4
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Val53Phe
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9317
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4489
  num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

X-140785765-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785765
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785765
    reference: chr 0
allele count: 1
allele frequency: 1.144151668745209e-5
allele num: 87401
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.151C>T
  hgvsp: ENST00000370515.3:c.151C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Leu51Leu
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 631
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10065
  num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-140785772-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785772
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785772
    reference: chr 0
allele count: 1
allele frequency: 1.145160551509322e-5
allele num: 87324
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.144G>T
  hgvsp: ENST00000370515.3:c.144G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser48Ser
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6630
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9317
  num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP

X-140785772-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785772
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785772
    reference: chr 0
allele count: 29
allele frequency: 3.320965599377033e-4
allele num: 87324
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.144G>A
  hgvsp: ENST00000370515.3:c.144G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser48Ser
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10031
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 27
  allele frequency: 5.654213436086447e-4
  allele num: 47752
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

X-140785773-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785773
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785773
    reference: chr 0
allele count: 4
allele frequency: 4.58631443771785e-5
allele num: 87216
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.143C>T
  hgvsp: ENSP00000359546.3:p.Ser48Leu
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser48Leu
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 2
  allele frequency: 2.003405789842733e-4
  allele num: 9983
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4481
  num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
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site quality: ClippingRankSum

X-140785773-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785773
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785773
    reference: chr 0
allele count: 19
allele frequency: 2.178499357915979e-4
allele num: 87216
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.143C>A
  hgvsp: ENSP00000359546.3:p.Ser48Ter
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser48Ter
num of homozygotes: 0
population: Other
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  allele num: 630
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population: Latino
  type: Population
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  allele num: 9316
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD

X-140785776-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785776
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785776
    reference: chr 0
allele count: 1
allele frequency: 1.149346022113417e-5
allele num: 87006
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.140C>T
  hgvsp: ENSP00000359546.3:p.Ser47Phe
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Ser47Phe
num of homozygotes: 0
population: East Asian
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  allele num: 6629
  num of homozygotes: 0
population: European (Finnish)
  type: Population
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  allele num: 4471
  num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

X-140785777-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785777
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785777
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 86905
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.139T>C
  hgvsp: ENSP00000359546.3:p.Ser47Pro
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 6098
  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser47Pro
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 47520
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6629
  num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

X-140785779-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785779
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785779
    reference: chr 0
allele count: 1
allele frequency: 1.154321201417506e-5
allele num: 86631
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.137A>C
  hgvsp: ENSP00000359546.3:p.Glu46Ala
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Glu46Ala
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 626
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4451
  num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

X-140785781-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785781
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785781
    reference: chr 0
allele count: 2
allele frequency: 2.308855615714071e-5
allele num: 86623
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.135T>G
  hgvsp: ENST00000370515.3:c.135T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser45Ser
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4450
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 4.225560414950033e-5
  allele num: 47331
  num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

X-140785785-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785785
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785785
    reference: chr 0
allele count: 1
allele frequency: 1.15473441108545e-5
allele num: 86600
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.131C>T
  hgvsp: ENSP00000359546.3:p.Thr44Ile
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Thr44Ile
num of homozygotes: 0
population: African
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  allele count: 1
  allele frequency: 1.184413123297406e-4
  allele num: 8443
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 47323
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

X-140785787-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785787
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785787
    reference: chr 0
allele count: 2
allele frequency: 2.309682187730968e-5
allele num: 86592
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.129A>C
  hgvsp: ENSP00000359546.3:p.Lys43Asn
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Lys43Asn
num of homozygotes: 0
population: Latino
  type: Population
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  allele frequency: 0.0e0
  allele num: 9300
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6620
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

X-140785790-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785790
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785790
    reference: chr 0
allele count: 1886
allele frequency: 2.181204172738417e-2
allele num: 86466
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.126A>G
  hgvsp: ENST00000370515.3:c.126A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 2.5e0
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  bin: 1.25e1
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genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 5.25e1
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1541
  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 36934
  bin: 9.75e1
  variant carriers: 2077
hgvs: p.Leu42Leu
num of homozygotes: 34
population: Other
  type: Population
  allele count: 13
  allele frequency: 2.07667731629393e-2
  allele num: 626
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 42
  allele frequency: 9.442446043165468e-3
  allele num: 4448
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ

X-140785791-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785791
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785791
    reference: chr 0
allele count: 2
allele frequency: 2.309868914939077e-5
allele num: 86585
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.125T>G
  hgvsp: ENSP00000359546.3:p.Leu42Arg
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Leu42Arg
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6620
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9838
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

X-140785792-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785792
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785792
    reference: chr 0
allele count: 1
allele frequency: 1.155895645741102e-5
allele num: 86513
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.124C>G
  hgvsp: ENSP00000359546.3:p.Leu42Val
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21336
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Leu42Val
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8408
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 626
  num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

X-140785792-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785792
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785793
    reference: chr 0
allele count: 2
allele frequency: 2.311791291482205e-5
allele num: 86513
alternate allele: GT
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.123dupA
  hgvsp: ENSP00000359546.3:p.Leu42ThrfsTer5
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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hgvs: p.Leu42ThrfsTer5
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 626
  num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 1.189343482397717e-4
  allele num: 8408
  num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

X-140785792-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785792
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785792
    reference: chr 0
allele count: 434
allele frequency: 5.016587102516385e-3
allele num: 86513
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.124C>A
  hgvsp: ENSP00000359546.3:p.Leu42Ile
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 44
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 34
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 552
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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hgvs: p.Leu42Ile
num of homozygotes: 4
population: East Asian
  type: Population
  allele count: 36
  allele frequency: 5.447941888619854e-3
  allele num: 6608
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 8
  allele frequency: 1.798561151079137e-3
  allele num: 4448
  num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum

X-140785792-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785792
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785791
    reference: chr 0
allele count: 2
allele frequency: 2.311791291482205e-5
allele num: 86513
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.123delA
  hgvsp: ENSP00000359546.3:p.Lys41AsnfsTer2
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Lys41AsnfsTer2
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9297
  num of homozygotes: 0
population: Other
  type: Population
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  allele frequency: 0.0e0
  allele num: 626
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: GT
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
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X-140785793-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785793
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785793
    reference: chr 0
allele count: 1
allele frequency: 1.15529471568197e-5
allele num: 86558
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.123A>T
  hgvsp: ENSP00000359546.3:p.Lys41Asn
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Lys41Asn
num of homozygotes: 0
population: African
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  allele num: 8435
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population: Latino
  type: Population
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  allele frequency: 0.0e0
  allele num: 9294
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-140785793-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785793
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785793
    reference: chr 0
allele count: 1544
allele frequency: 1.783775041012962e-2
allele num: 86558
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.123A>G
  hgvsp: ENST00000370515.3:c.123A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Lys41Lys
num of homozygotes: 32
population: East Asian
  type: Population
  allele count: 1
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  allele num: 6618
  num of homozygotes: 0
population: Other
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  allele num: 626
  num of homozygotes: 1
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

X-140785794-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785794
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785794
    reference: chr 0
allele count: 2
allele frequency: 2.310322521023935e-5
allele num: 86568
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.122A>T
  hgvsp: ENSP00000359546.3:p.Lys41Ile
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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hgvs: p.Lys41Ile
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 47301
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8436
  num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ

X-140785794-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785794
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785794
    reference: chr 0
allele count: 3
allele frequency: 3.465483781535902e-5
allele num: 86568
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.122A>G
  hgvsp: ENSP00000359546.3:p.Lys41Arg
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Lys41Arg
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4450
  num of homozygotes: 0
population: South Asian
  type: Population
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  allele frequency: 0.0e0
  allele num: 9838
  num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

X-140785794-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785794
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785794
    reference: chr 0
allele count: 28
allele frequency: 3.234451529433509e-4
allele num: 86568
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.122A>C
  hgvsp: ENSP00000359546.3:p.Lys41Thr
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Lys41Thr
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4450
  num of homozygotes: 0
population: South Asian
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  allele num: 9838
  num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

X-140785795-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785795
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785795
    reference: chr 0
allele count: 1
allele frequency: 1.155241329913819e-5
allele num: 86562
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.121A>C
  hgvsp: ENSP00000359546.3:p.Lys41Gln
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Lys41Gln
num of homozygotes: 0
population: Latino
  type: Population
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  num of homozygotes: 0
population: Other
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  num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

X-140785797-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785797
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785797
    reference: chr 0
allele count: 2
allele frequency: 2.310642820832756e-5
allele num: 86556
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.119A>G
  hgvsp: ENSP00000359546.3:p.Lys40Arg
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Lys40Arg
num of homozygotes: 0
population: East Asian
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population: Other
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  num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

X-140785797-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785797
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785797
    reference: chr 0
allele count: 1
allele frequency: 1.155321410416378e-5
allele num: 86556
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.119A>C
  hgvsp: ENSP00000359546.3:p.Lys40Thr
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Lys40Thr
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 626
  num of homozygotes: 0
population: European (Finnish)
  type: Population
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  allele frequency: 0.0e0
  allele num: 4448
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
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site quality: QD

X-140785799-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785799
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785799
    reference: chr 0
allele count: 1322
allele frequency: 1.529596889896793e-2
allele num: 86428
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.117G>A
  hgvsp: ENST00000370515.3:c.117G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Pro39Pro
num of homozygotes: 18
population: European (Finnish)
  type: Population
  allele count: 3
  allele frequency: 6.746120980436249e-4
  allele num: 4447
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 62
  allele frequency: 6.670252824098978e-3
  allele num: 9295
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

X-140785799-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785799
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785799
    reference: chr 0
allele count: 470
allele frequency: 5.438052482991623e-3
allele num: 86428
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.117G>T
  hgvsp: ENST00000370515.3:c.117G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Pro39Pro
num of homozygotes: 4
population: East Asian
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  allele frequency: 1.10555807966076e-2
  allele num: 6603
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population: South Asian
  type: Population
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  allele num: 9833
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

X-140785800-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785800
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785800
    reference: chr 0
allele count: 3
allele frequency: 3.467125868226103e-5
allele num: 86527
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.116C>T
  hgvsp: ENSP00000359546.3:p.Pro39Leu
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Pro39Leu
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 1.513317191283293e-4
  allele num: 6608
  num of homozygotes: 0
population: European (Finnish)
  type: Population
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  allele frequency: 0.0e0
  allele num: 4447
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

X-140785800-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785800
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785800
    reference: chr 0
allele count: 3
allele frequency: 3.467125868226103e-5
allele num: 86527
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.116C>G
  hgvsp: ENSP00000359546.3:p.Pro39Arg
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro39Arg
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9836
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4447
  num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-140785803-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785803
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785803
    reference: chr 0
allele count: 2
allele frequency: 2.311524103417588e-5
allele num: 86523
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.113C>T
  hgvsp: ENSP00000359546.3:p.Ala38Val
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala38Val
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6606
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 625
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

X-140785803-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785803
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785803
    reference: chr 0
allele count: 3
allele frequency: 3.467286155126383e-5
allele num: 86523
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.113C>G
  hgvsp: ENSP00000359546.3:p.Ala38Gly
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala38Gly
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6606
  num of homozygotes: 0
population: Other
  type: Population
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  allele frequency: 0.0e0
  allele num: 625
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ

X-140785808-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785808
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785808
    reference: chr 0
allele count: 1
allele frequency: 1.155855564288687e-5
allele num: 86516
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.108A>G
  hgvsp: ENST00000370515.3:c.108A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Gln36Gln
num of homozygotes: 0
population: Latino
  type: Population
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  allele frequency: 0.0e0
  allele num: 9296
  num of homozygotes: 0
population: South Asian
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  allele num: 9836
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

X-140785811-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785811
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785811
    reference: chr 0
allele count: 2
allele frequency: 2.311791291482205e-5
allele num: 86513
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.105G>A
  hgvsp: ENST00000370515.3:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
hgvs: p.Pro35Pro
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9297
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 625
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ

X-140785812-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785812
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785812
    reference: chr 0
allele count: 4
allele frequency: 4.623903267943635e-5
allele num: 86507
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.104C>T
  hgvsp: ENSP00000359546.3:p.Pro35Leu
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1578
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  variant carriers: 0
hgvs: p.Pro35Leu
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 2
  allele frequency: 2.03334688897926e-4
  allele num: 9836
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9297
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-140785812-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785812
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785812
    reference: chr 0
allele count: 1
allele frequency: 1.155975816985909e-5
allele num: 86507
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.104C>G
  hgvsp: ENSP00000359546.3:p.Pro35Arg
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20597
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Pro35Arg
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4447
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6603
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

X-140785813-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785813
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785813
    reference: chr 0
allele count: 1
allele frequency: 1.155989179941276e-5
allele num: 86506
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.103C>A
  hgvsp: ENSP00000359546.3:p.Pro35Thr
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 899
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  variant carriers: 0
hgvs: p.Pro35Thr
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 47277
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4447
  num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

X-140785814-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785814
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785814
    reference: chr 0
allele count: 1
allele frequency: 1.156002543205595e-5
allele num: 86505
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.102C>T
  hgvsp: ENST00000370515.3:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6307
  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1410
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hgvs: p.Asp34Asp
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6604
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 625
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD

X-140785821-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785821
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785821
    reference: chr 0
allele count: 3
allele frequency: 3.468729404419161e-5
allele num: 86487
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.95A>G
  hgvsp: ENSP00000359546.3:p.Tyr32Cys
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Tyr32Cys
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4447
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6598
  num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

X-140785822-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785822
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785822
    reference: chr 0
allele count: 321
allele frequency: 3.718031875463306e-3
allele num: 86336
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.94T>G
  hgvsp: ENSP00000359546.3:p.Tyr32Asp
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Tyr32Asp
num of homozygotes: 5
population: Latino
  type: Population
  allele count: 19
  allele frequency: 2.045870571766986e-3
  allele num: 9287
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 2
  allele frequency: 3.2e-3
  allele num: 625
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

X-140785822-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785822
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785822
    reference: chr 0
allele count: 2
allele frequency: 2.31653076352854e-5
allele num: 86336
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.94T>C
  hgvsp: ENSP00000359546.3:p.Tyr32His
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Tyr32His
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6592
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 4.231550440081246e-5
  allele num: 47264
  num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

X-140785824-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785824
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785824
    reference: chr 0
allele count: 2
allele frequency: 2.312406058503873e-5
allele num: 86490
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.92G>C
  hgvsp: ENSP00000359546.3:p.Gly31Ala
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1846
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  variant carriers: 0
hgvs: p.Gly31Ala
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 4.230834320528008e-5
  allele num: 47272
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 624
  num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

X-140785825-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785825
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785825
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 86481
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.91G>T
  hgvsp: ENSP00000359546.3:p.Gly31Trp
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 897
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  variant carriers: 0
hgvs: p.Gly31Trp
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9295
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4447
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP

X-140785825-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785825
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785825
    reference: chr 0
allele count: 12
allele frequency: 1.387588025115343e-4
allele num: 86481
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.91G>A
  hgvsp: ENSP00000359546.3:p.Gly31Arg
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Gly31Arg
num of homozygotes: 2
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4447
  num of homozygotes: 0
population: Other
  type: Population
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  allele frequency: 0.0e0
  allele num: 624
  num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

X-140785827-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785827
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785827
    reference: chr 0
allele count: 269
allele frequency: 3.114002593072791e-3
allele num: 86384
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.89G>C
  hgvsp: ENSP00000359546.3:p.Ser30Thr
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 224
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser30Thr
num of homozygotes: 5
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4447
  num of homozygotes: 0
population: African
  type: Population
  allele count: 204
  allele frequency: 2.448097923916957e-2
  allele num: 8333
  num of homozygotes: 5
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

X-140785829-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785829
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785829
    reference: chr 0
allele count: 268
allele frequency: 3.102498205644694e-3
allele num: 86382
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.87G>A
  hgvsp: ENST00000370515.3:c.87G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1185
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2203
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hgvs: p.Ser29Ser
num of homozygotes: 5
population: East Asian
  type: Population
  allele count: 26
  allele frequency: 3.942978465271459e-3
  allele num: 6594
  num of homozygotes: 0
population: African
  type: Population
  allele count: 202
  allele frequency: 2.42438790206433e-2
  allele num: 8332
  num of homozygotes: 5
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-140785830-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785830
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785830
    reference: chr 0
allele count: 1
allele frequency: 1.15651057628922e-5
allele num: 86467
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.86C>G
  hgvsp: ENSP00000359546.3:p.Ser29Trp
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1410
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  variant carriers: 0
hgvs: p.Ser29Trp
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 47266
  num of homozygotes: 0
population: European (Finnish)
  type: Population
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  allele frequency: 0.0e0
  allele num: 4447
  num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

X-140785831-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785831
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785831
    reference: chr 0
allele count: 272
allele frequency: 3.149606299212598e-3
allele num: 86360
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.85T>C
  hgvsp: ENSP00000359546.3:p.Ser29Pro
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8939
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 7.25e1
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genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 9.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2584
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  variant carriers: 5
genotype depth: GenotypeDepth
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  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 20
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 212
genotype depth: GenotypeDepth
  all individuals: 1014
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genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1087
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  variant carriers: 8
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 11649
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2203
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 23
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  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 9.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 35748
  bin: 9.75e1
  variant carriers: 322
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 3902
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1574
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 37
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genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 8.25e1
  variant carriers: 4
hgvs: p.Ser29Pro
num of homozygotes: 6
population: East Asian
  type: Population
  allele count: 27
  allele frequency: 4.095252540573335e-3
  allele num: 6593
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 5
  allele frequency: 5.085435313262816e-4
  allele num: 9832
  num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

X-140785832-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785832
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785832
    reference: chr 0
allele count: 2
allele frequency: 2.313315443693902e-5
allele num: 86456
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.84C>A
  hgvsp: ENST00000370515.3:c.84C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 11
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  variant carriers: 0
hgvs: p.Thr28Thr
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9292
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8396
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-140785835-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785835
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785835
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 86440
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.81G>A
  hgvsp: ENST00000370515.3:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8950
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3901
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  variant carriers: 0
hgvs: p.Glu27Glu
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9292
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6600
  num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

X-140785838-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785838
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785838
    reference: chr 0
allele count: 4
allele frequency: 4.628343978524484e-5
allele num: 86424
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.78G>A
  hgvsp: ENST00000370515.3:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6308
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1010
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 170
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  variant carriers: 0
hgvs: p.Pro26Pro
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4447
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6600
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

X-140785839-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785839
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785839
    reference: chr 0
allele count: 1
allele frequency: 1.157327037474249e-5
allele num: 86406
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.77C>T
  hgvsp: ENSP00000359546.3:p.Pro26Leu
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro26Leu
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 623
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population: South Asian
  type: Population
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  allele frequency: 0.0e0
  allele num: 9834
  num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS

X-140785840-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785840
    reference: chr 0
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    type: ExactPosition
    position: 24140785840
    reference: chr 0
allele count: 6
allele frequency: 6.943399719949545e-5
allele num: 86413
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.76C>T
  hgvsp: ENSP00000359546.3:p.Pro26Ser
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro26Ser
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 623
  num of homozygotes: 0
population: African
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  allele num: 8369
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD

X-140785851-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785851
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785850
    reference: chr 0
allele count: 1
allele frequency: 1.157769210285622e-5
allele num: 86373
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.73-9delT
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
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  allele num: 9290
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population: European (Finnish)
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population: East Asian
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  allele frequency: 0.0e0
  allele num: 6599
  num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: GA
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

X-140785855-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785855
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785855
    reference: chr 0
allele count: 14318
allele frequency: 1.661927036783397e-1
allele num: 86153
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.73-12T>C
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3673
  bin: 2.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 27
population: Latino
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population: Other
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population: South Asian
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  allele num: 9831
  num of homozygotes: 4
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

X-140785859-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785859
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785859
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 86243
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.73-16C>A
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1699
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
  type: Population
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  allele num: 9284
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population: East Asian
  type: Population
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  allele num: 6596
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population: European (Finnish)
  type: Population
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  allele frequency: 0.0e0
  allele num: 4447
  num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
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X-140785862-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785862
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785862
    reference: chr 0
allele count: 1
allele frequency: 1.159568176810956e-5
allele num: 86239
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.73-19C>T
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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population: Latino
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population: European (Non-Finnish)
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  allele num: 47178
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population: South Asian
population: African
population: East Asian
population: Other
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site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
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X-140785866-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785866
    reference: chr 0
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    type: ExactPosition
    position: 24140785866
    reference: chr 0
allele count: 1
allele frequency: 1.160012064125467e-5
allele num: 86206
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.73-23G>C
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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population: European (Finnish)
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population: South Asian
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  allele num: 9829
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population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
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X-140785869-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785869
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785869
    reference: chr 0
allele count: 1
allele frequency: 1.160523628261071e-5
allele num: 86168
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.73-26C>G
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 495
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: East Asian
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population: European (Non-Finnish)
population: Latino
population: African
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reference allele: G
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
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X-140785871-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785871
    reference: chr 0
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    type: ExactPosition
    position: 24140785871
    reference: chr 0
allele count: 1
allele frequency: 1.160631383472609e-5
allele num: 86160
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.73-28T>C
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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site quality: DP
site quality: VQSLOD
site quality: MQ
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site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

X-140785872-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785872
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785872
    reference: chr 0
allele count: 2
allele frequency: 2.321505264013186e-5
allele num: 86151
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.73-29C>T
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 1
population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 4.242231413723618e-5
  allele num: 47145
  num of homozygotes: 1
population: East Asian
  type: Population
  allele count: 0
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population: Other
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  allele num: 622
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

X-140785872-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785872
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785872
    reference: chr 0
allele count: 11
allele frequency: 1.276827895207252e-4
allele num: 86151
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.73-29C>G
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
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population: African
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  allele frequency: 1.333980111569246e-3
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population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 47145
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

X-140785873-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785873
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785873
    reference: chr 0
allele count: 1
allele frequency: 1.160873905876344e-5
allele num: 86142
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.73-30C>A
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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population: Latino
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population: Other
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population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

X-140785876-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785876
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785876
    reference: chr 0
allele count: 1
allele frequency: 1.161008684344959e-5
allele num: 86132
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.73-33T>C
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4429
  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
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population: European (Finnish)
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population: East Asian
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population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: FS
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site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-140785894-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24140785894
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24140785894
    reference: chr 0
allele count: 1
allele frequency: 1.166997315906173e-5
allele num: 85690
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196406
  ensembl protein: ENSP00000359546
  ensembl transcript: ENST00000370515
  gene symbol: SPANXD
  hgvsc: ENST00000370515.3:c.73-51C>G
  variant of: http://identifiers.org/hgnc/14332
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7745
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47809
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4489
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10065
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.95e-1

FS
type: SiteQuality
SIO_000300: 2.8756e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.436e0

QD
type: SiteQuality
SIO_000300: 7.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.19e-2

MQ
type: SiteQuality
SIO_000300: 4.777e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.813e0

MQRankSum
type: SiteQuality
SIO_000300: 3.34e0

VQSLOD
type: SiteQuality
SIO_000300: -6.72e0

DP
type: SiteQuality
SIO_000300: 6.673191e6

South Asian
type: Population
allele count: 933
allele frequency: 9.332799839951986e-2
allele num: 9997
num of homozygotes: 0

Other
type: Population
allele count: 62
allele frequency: 1.0e-1
allele num: 620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6067
allele frequency: 1.28688089935306e-1
allele num: 47145
num of homozygotes: 0

African
type: Population
allele count: 1585
allele frequency: 1.912403474903475e-1
allele num: 8288
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 565
allele frequency: 1.285844333181611e-1
allele num: 4394
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.109e0

VQSLOD
type: SiteQuality
SIO_000300: 2.4e0

QD
type: SiteQuality
SIO_000300: 4.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.76e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.56e0

FS
type: SiteQuality
SIO_000300: 9.013e0

MQ
type: SiteQuality
SIO_000300: 4.869e1

DP
type: SiteQuality
SIO_000300: 7.392723e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.78e-1

European (Non-Finnish)
type: Population
allele count: 6084
allele frequency: 1.291089276998493e-1
allele num: 47123
num of homozygotes: 0

Latino
type: Population
allele count: 1348
allele frequency: 1.488844709520654e-1
allele num: 9054
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 565
allele frequency: 1.287015945330296e-1
allele num: 4390
num of homozygotes: 0

South Asian
type: Population
allele count: 935
allele frequency: 9.348130373925215e-2
allele num: 10002
num of homozygotes: 0

Other
type: Population
allele count: 62
allele frequency: 9.983896940418679e-2
allele num: 621
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.01e-1

MQ
type: SiteQuality
SIO_000300: 4.871e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.781e-1

DP
type: SiteQuality
SIO_000300: 7.392357e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.721e0

VQSLOD
type: SiteQuality
SIO_000300: 3.26e0

QD
type: SiteQuality
SIO_000300: 4.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.07e0

MQRankSum
type: SiteQuality
SIO_000300: -5.844e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47807
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4489
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.937394415184339e-5
allele num: 10063
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.05e-1

MQ
type: SiteQuality
SIO_000300: 5.288e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.78e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.014e1

DP
type: SiteQuality
SIO_000300: 5.544019e6

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47803
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.844e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

DP
type: SiteQuality
SIO_000300: 5.544336e6

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-1

QD
type: SiteQuality
SIO_000300: 1.11e1

VQSLOD
type: SiteQuality
SIO_000300: -1.459e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.028e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.45e-1

MQ
type: SiteQuality
SIO_000300: 5.073e1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10064
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4489
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.028e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

QD
type: SiteQuality
SIO_000300: 1.11e1

VQSLOD
type: SiteQuality
SIO_000300: -1.459e0

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-1

FS
type: SiteQuality
SIO_000300: 1.844e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.65e-1

DP
type: SiteQuality
SIO_000300: 5.544336e6

MQ
type: SiteQuality
SIO_000300: 5.073e1

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.227667631989307e-4
allele num: 4489
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10063
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.42e-1

QD
type: SiteQuality
SIO_000300: 5.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.77e0

MQ
type: SiteQuality
SIO_000300: 4.883e1

MQRankSum
type: SiteQuality
SIO_000300: -6.748e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.722e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.29e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.523e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.159e0

DP
type: SiteQuality
SIO_000300: 5.544042e6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10065
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4489
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.259e1

MQ
type: SiteQuality
SIO_000300: 4.829e1

VQSLOD
type: SiteQuality
SIO_000300: -6.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.302e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.166e0

DP
type: SiteQuality
SIO_000300: 5.543286e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-2

South Asian
type: Population
allele count: 1
allele frequency: 9.935419771485345e-5
allele num: 10065
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4489
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.325e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.84e-1

QD
type: SiteQuality
SIO_000300: 7.3e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.905e0

DP
type: SiteQuality
SIO_000300: 5.54303e6

MQ
type: SiteQuality
SIO_000300: 4.603e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8483
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4489
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.987083954297069e-4
allele num: 10065
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47798
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

QD
type: SiteQuality
SIO_000300: 1.685e1

DP
type: SiteQuality
SIO_000300: 5.543209e6

MQ
type: SiteQuality
SIO_000300: 5.069e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

VQSLOD
type: SiteQuality
SIO_000300: 7.55e0

FS
type: SiteQuality
SIO_000300: 1.809e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.465e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4489
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.09213774634922e-5
allele num: 47798
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.073306858430825e-4
allele num: 9317
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10065
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.55e0

QD
type: SiteQuality
SIO_000300: 1.685e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

MQ
type: SiteQuality
SIO_000300: 5.069e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 1.809e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.465e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.42e-1

DP
type: SiteQuality
SIO_000300: 5.543209e6

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8483
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4489
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.243e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

FS
type: SiteQuality
SIO_000300: 3.324e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

QD
type: SiteQuality
SIO_000300: 1.398e1

MQ
type: SiteQuality
SIO_000300: 5.046e1

VQSLOD
type: SiteQuality
SIO_000300: 1.705e1

DP
type: SiteQuality
SIO_000300: 5.543029e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.882963365901625e-4
allele num: 47797
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8483
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4489
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

FS
type: SiteQuality
SIO_000300: 3.324e0

VQSLOD
type: SiteQuality
SIO_000300: 1.705e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.243e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

DP
type: SiteQuality
SIO_000300: 5.543029e6

MQ
type: SiteQuality
SIO_000300: 5.046e1

QD
type: SiteQuality
SIO_000300: 1.398e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47795
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8483
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.584786053882726e-3
allele num: 631
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10065
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4489
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.44e1

VQSLOD
type: SiteQuality
SIO_000300: -2.447e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 5.147e1

DP
type: SiteQuality
SIO_000300: 5.54236e6

FS
type: SiteQuality
SIO_000300: 2.551e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.049e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.536484734174231e-4
allele num: 8483
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10065
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47796
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.733e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.727e0

MQ
type: SiteQuality
SIO_000300: 4.734e1

QD
type: SiteQuality
SIO_000300: 3.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.64e0

DP
type: SiteQuality
SIO_000300: 5.542194e6

FS
type: SiteQuality
SIO_000300: 1.473e0

VQSLOD
type: SiteQuality
SIO_000300: -3.486e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.179384361363368e-4
allele num: 8479
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4489
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.752e0

MQ
type: SiteQuality
SIO_000300: 4.505e1

VQSLOD
type: SiteQuality
SIO_000300: -4.025e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.504e0

QD
type: SiteQuality
SIO_000300: 2.69e0

FS
type: SiteQuality
SIO_000300: 1.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e0

DP
type: SiteQuality
SIO_000300: 5.541257e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.687e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4487
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8477
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10031
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.094153124476462e-5
allele num: 47752
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.99e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.567e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.413e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.68e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.84e0

MQ
type: SiteQuality
SIO_000300: 4.882e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e0

QD
type: SiteQuality
SIO_000300: 7.05e0

DP
type: SiteQuality
SIO_000300: 5.543347e6

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.228660574994428e-4
allele num: 4487
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.508295625942685e-4
allele num: 6630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8477
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.413e0

QD
type: SiteQuality
SIO_000300: 7.05e0

MQRankSum
type: SiteQuality
SIO_000300: -3.567e0

DP
type: SiteQuality
SIO_000300: 5.543347e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e0

FS
type: SiteQuality
SIO_000300: 5.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.68e-2

MQ
type: SiteQuality
SIO_000300: 4.882e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.84e0

Latino
type: Population
allele count: 1
allele frequency: 1.07342206955775e-4
allele num: 9316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.09643605870021e-5
allele num: 47700
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

DP
type: SiteQuality
SIO_000300: 5.540582e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

FS
type: SiteQuality
SIO_000300: 1.147e0

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

VQSLOD
type: SiteQuality
SIO_000300: 2.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.81e-2

QD
type: SiteQuality
SIO_000300: 1.52e1

MQ
type: SiteQuality
SIO_000300: 5.17e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.69e-1

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 3.563941299790356e-4
allele num: 47700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 4.463289444320464e-4
allele num: 4481
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9983
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

VQSLOD
type: SiteQuality
SIO_000300: 2.46e0

MQ
type: SiteQuality
SIO_000300: 5.17e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

DP
type: SiteQuality
SIO_000300: 5.540582e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.81e-2

FS
type: SiteQuality
SIO_000300: 1.147e0

QD
type: SiteQuality
SIO_000300: 1.52e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.009081735620585e-4
allele num: 9910
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8473
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 2.155e0

MQRankSum
type: SiteQuality
SIO_000300: -3.999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-2

DP
type: SiteQuality
SIO_000300: 5.534505e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.688e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

VQSLOD
type: SiteQuality
SIO_000300: -3.754e0

MQ
type: SiteQuality
SIO_000300: 4.598e1

QD
type: SiteQuality
SIO_000300: 5.99e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4469
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.754e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.165e1

FS
type: SiteQuality
SIO_000300: 4.526e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.52e0

VQSLOD
type: SiteQuality
SIO_000300: -6.662e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.975e0

DP
type: SiteQuality
SIO_000300: 5.53274e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.59e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8453
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47334
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.01615689462453e-4
allele num: 9841
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.826e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
type: SiteQuality
SIO_000300: 1.171e1

MQRankSum
type: SiteQuality
SIO_000300: -1.618e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.44e-1

FS
type: SiteQuality
SIO_000300: 5.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.724e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 5.521262e6

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9840
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8451
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9301
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.404e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.14e-1

QD
type: SiteQuality
SIO_000300: 4.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.084e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.23e0

DP
type: SiteQuality
SIO_000300: 5.520803e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 4.905e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6621
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4449
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.151e0

QD
type: SiteQuality
SIO_000300: 9.59e0

FS
type: SiteQuality
SIO_000300: 6.021e0

DP
type: SiteQuality
SIO_000300: 5.519701e6

VQSLOD
type: SiteQuality
SIO_000300: -2.934e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.663e0

MQ
type: SiteQuality
SIO_000300: 5.015e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47321
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.370229912301493e-4
allele num: 8438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4449
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.43e0

DP
type: SiteQuality
SIO_000300: 5.519555e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.454e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

MQ
type: SiteQuality
SIO_000300: 4.887e1

QD
type: SiteQuality
SIO_000300: 8.73e0

FS
type: SiteQuality
SIO_000300: 5.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

European (Non-Finnish)
type: Population
allele count: 1392
allele frequency: 2.943851115575764e-2
allele num: 47285
num of homozygotes: 26

Latino
type: Population
allele count: 109
allele frequency: 1.172925858172818e-2
allele num: 9293
num of homozygotes: 1

African
type: Population
allele count: 221
allele frequency: 2.635973282442748e-2
allele num: 8384
num of homozygotes: 7

South Asian
type: Population
allele count: 71
allele frequency: 7.219115404168785e-3
allele num: 9835
num of homozygotes: 0

East Asian
type: Population
allele count: 38
allele frequency: 5.761940864291129e-3
allele num: 6595
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.692e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.02e-1

DP
type: SiteQuality
SIO_000300: 5.671792e6

VQSLOD
type: SiteQuality
SIO_000300: 3.313e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.293e0

QD
type: SiteQuality
SIO_000300: 1.243e1

MQ
type: SiteQuality
SIO_000300: 4.948e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9299
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.370229912301493e-4
allele num: 8438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47314
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.87e0

FS
type: SiteQuality
SIO_000300: 6.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.034e0

VQSLOD
type: SiteQuality
SIO_000300: -2.116e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.12e-1

MQ
type: SiteQuality
SIO_000300: 5.119e1

DP
type: SiteQuality
SIO_000300: 5.480119e6

QD
type: SiteQuality
SIO_000300: 4.42e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.075615790039798e-4
allele num: 9297
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47291
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9835
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4448
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.858e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e-1

FS
type: SiteQuality
SIO_000300: 4.066e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.282e0

MQRankSum
type: SiteQuality
SIO_000300: -5.789e0

VQSLOD
type: SiteQuality
SIO_000300: -1.147e0

DP
type: SiteQuality
SIO_000300: 5.479825e6

MQ
type: SiteQuality
SIO_000300: 4.866e1

East Asian
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9297
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47291
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9835
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.066e0

QD
type: SiteQuality
SIO_000300: 4.62e0

VQSLOD
type: SiteQuality
SIO_000300: -1.147e0

MQRankSum
type: SiteQuality
SIO_000300: -5.789e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.858e-1

DP
type: SiteQuality
SIO_000300: 5.479825e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.282e0

MQ
type: SiteQuality
SIO_000300: 4.866e1

African
type: Population
allele count: 184
allele frequency: 2.188392007611798e-2
allele num: 8408
num of homozygotes: 4

Other
type: Population
allele count: 3
allele frequency: 4.792332268370607e-3
allele num: 626
num of homozygotes: 0

Latino
type: Population
allele count: 24
allele frequency: 2.581477896095515e-3
allele num: 9297
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 120
allele frequency: 2.537480704573809e-3
allele num: 47291
num of homozygotes: 0

South Asian
type: Population
allele count: 59
allele frequency: 5.998983223182512e-3
allele num: 9835
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.866e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.147e0

QD
type: SiteQuality
SIO_000300: 4.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.858e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.282e0

DP
type: SiteQuality
SIO_000300: 5.479825e6

FS
type: SiteQuality
SIO_000300: 4.066e0

MQRankSum
type: SiteQuality
SIO_000300: -5.789e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.229134507623015e-5
allele num: 47291
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9835
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.62e0

MQRankSum
type: SiteQuality
SIO_000300: -5.789e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.282e0

VQSLOD
type: SiteQuality
SIO_000300: -1.147e0

DP
type: SiteQuality
SIO_000300: 5.479825e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.858e-1

FS
type: SiteQuality
SIO_000300: 4.066e0

MQ
type: SiteQuality
SIO_000300: 4.866e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47297
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4450
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.557e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

DP
type: SiteQuality
SIO_000300: 5.587987e6

MQRankSum
type: SiteQuality
SIO_000300: 3.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.2e1

MQ
type: SiteQuality
SIO_000300: 5.274e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.165e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.69e-1

South Asian
type: Population
allele count: 80
allele frequency: 8.131734092295182e-3
allele num: 9838
num of homozygotes: 2

Latino
type: Population
allele count: 123
allele frequency: 1.323434473854099e-2
allele num: 9294
num of homozygotes: 5

European (Finnish)
type: Population
allele count: 167
allele frequency: 3.752808988764045e-2
allele num: 4450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1137
allele frequency: 2.403957967735797e-2
allele num: 47297
num of homozygotes: 22

African
type: Population
allele count: 24
allele frequency: 2.845287492590397e-3
allele num: 8435
num of homozygotes: 2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.165e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.2e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

MQ
type: SiteQuality
SIO_000300: 5.274e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.557e1

MQRankSum
type: SiteQuality
SIO_000300: 3.0e0

DP
type: SiteQuality
SIO_000300: 5.587987e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.07e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9297
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4450
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.032933523073795e-4
allele num: 9838
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.59e0

MQRankSum
type: SiteQuality
SIO_000300: 3.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

FS
type: SiteQuality
SIO_000300: 5.639999999999999e-1

DP
type: SiteQuality
SIO_000300: 5.380311e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.72e-2

QD
type: SiteQuality
SIO_000300: 1.141e1

VQSLOD
type: SiteQuality
SIO_000300: 2.58e-1

MQ
type: SiteQuality
SIO_000300: 5.327e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.342360626625229e-5
allele num: 47301
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9297
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.141e1

FS
type: SiteQuality
SIO_000300: 5.639999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.72e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

DP
type: SiteQuality
SIO_000300: 5.380311e6

MQ
type: SiteQuality
SIO_000300: 5.327e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.59e0

VQSLOD
type: SiteQuality
SIO_000300: 2.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.94e-1

Latino
type: Population
allele count: 28
allele frequency: 3.011724212111434e-3
allele num: 9297
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47301
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.380311e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.59e0

MQ
type: SiteQuality
SIO_000300: 5.327e1

FS
type: SiteQuality
SIO_000300: 5.639999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.72e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.94e-1

QD
type: SiteQuality
SIO_000300: 1.141e1

South Asian
type: Population
allele count: 1
allele frequency: 1.016466761536898e-4
allele num: 9838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8435
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4449
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6617
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47300
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.374942e6

QD
type: SiteQuality
SIO_000300: 3.384e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.21e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.82e-1

MQ
type: SiteQuality
SIO_000300: 5.316e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9297
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9837
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.228419205480031e-5
allele num: 47299
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.976e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.0e0

MQ
type: SiteQuality
SIO_000300: 5.335e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.22e-2

QD
type: SiteQuality
SIO_000300: 1.171e1

DP
type: SiteQuality
SIO_000300: 5.374902e6

MQRankSum
type: SiteQuality
SIO_000300: 1.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.63e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47299
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9297
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9837
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.511715797430083e-4
allele num: 6615
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.0e0

FS
type: SiteQuality
SIO_000300: 1.976e0

DP
type: SiteQuality
SIO_000300: 5.374902e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

MQ
type: SiteQuality
SIO_000300: 5.335e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.22e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.58e0

QD
type: SiteQuality
SIO_000300: 1.171e1

East Asian
type: Population
allele count: 1
allele frequency: 1.514463122822959e-4
allele num: 6603
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 422
allele frequency: 8.92800473903569e-3
allele num: 47267
num of homozygotes: 5

African
type: Population
allele count: 747
allele frequency: 8.938614335287783e-2
allele num: 8357
num of homozygotes: 12

Other
type: Population
allele count: 11
allele frequency: 1.757188498402556e-2
allele num: 626
num of homozygotes: 0

South Asian
type: Population
allele count: 76
allele frequency: 7.729075561883454e-3
allele num: 9833
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

FS
type: SiteQuality
SIO_000300: 6.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

DP
type: SiteQuality
SIO_000300: 5.456145e6

MQ
type: SiteQuality
SIO_000300: 4.956e1

VQSLOD
type: SiteQuality
SIO_000300: 2.881e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.957e-1

QD
type: SiteQuality
SIO_000300: 8.859999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.798965594783e-3
allele num: 4447
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 6.389776357827476e-3
allele num: 626
num of homozygotes: 0

Latino
type: Population
allele count: 25
allele frequency: 2.689618074233459e-3
allele num: 9295
num of homozygotes: 0

African
type: Population
allele count: 182
allele frequency: 2.177815005384708e-2
allele num: 8357
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 120
allele frequency: 2.538769120104936e-3
allele num: 47267
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.957e-1

DP
type: SiteQuality
SIO_000300: 5.456145e6

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

FS
type: SiteQuality
SIO_000300: 6.13e-1

MQ
type: SiteQuality
SIO_000300: 4.956e1

QD
type: SiteQuality
SIO_000300: 8.859999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 2.881e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.372760707082691e-4
allele num: 8429
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.15e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.018e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

FS
type: SiteQuality
SIO_000300: 6.14e-1

MQ
type: SiteQuality
SIO_000300: 4.837e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.51e-1

QD
type: SiteQuality
SIO_000300: 6.81e0

MQRankSum
type: SiteQuality
SIO_000300: -8.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.532e0

DP
type: SiteQuality
SIO_000300: 5.173003e6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.559141060624036e-4
allele num: 8429
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47286
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.018e0

MQ
type: SiteQuality
SIO_000300: 4.837e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.532e0

DP
type: SiteQuality
SIO_000300: 5.173003e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

FS
type: SiteQuality
SIO_000300: 6.14e-1

QD
type: SiteQuality
SIO_000300: 6.81e0

MQRankSum
type: SiteQuality
SIO_000300: -8.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.15e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47283
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.03334688897926e-4
allele num: 9836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4447
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.172032e6

MQ
type: SiteQuality
SIO_000300: 4.934e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.057e0

VQSLOD
type: SiteQuality
SIO_000300: -2.056e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.05e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.575e0

FS
type: SiteQuality
SIO_000300: 2.015e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

QD
type: SiteQuality
SIO_000300: 7.46e0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.344775077723494e-5
allele num: 47283
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4447
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

FS
type: SiteQuality
SIO_000300: 2.015e0

QD
type: SiteQuality
SIO_000300: 7.46e0

MQRankSum
type: SiteQuality
SIO_000300: -2.575e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.057e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.056e0

DP
type: SiteQuality
SIO_000300: 5.172032e6

MQ
type: SiteQuality
SIO_000300: 4.934e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.115103957359504e-5
allele num: 47279
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6605
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4447
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.66e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.463e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.422e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.395e0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 5.53e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.07e-2

DP
type: SiteQuality
SIO_000300: 5.171281e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.66e-1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.230207914719009e-5
allele num: 47279
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6603
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4447
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.03e-1

DP
type: SiteQuality
SIO_000300: 5.171255e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.796e-1

FS
type: SiteQuality
SIO_000300: 1.0032e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.62e-1

QD
type: SiteQuality
SIO_000300: 2.262e1

MQ
type: SiteQuality
SIO_000300: 5.306e1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47278
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.375014843842774e-4
allele num: 8421
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4447
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6603
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.684e1

VQSLOD
type: SiteQuality
SIO_000300: -2.723e0

FS
type: SiteQuality
SIO_000300: 2.865e0

DP
type: SiteQuality
SIO_000300: 5.171054e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-2

QD
type: SiteQuality
SIO_000300: 1.424e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.18e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.21e-1

African
type: Population
allele count: 1
allele frequency: 1.187507421921387e-4
allele num: 8421
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9297
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.684e1

FS
type: SiteQuality
SIO_000300: 2.865e0

DP
type: SiteQuality
SIO_000300: 5.171054e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.18e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-2

QD
type: SiteQuality
SIO_000300: 1.424e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

VQSLOD
type: SiteQuality
SIO_000300: -2.723e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.21e-1

Latino
type: Population
allele count: 1
allele frequency: 1.075615790039798e-4
allele num: 9297
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8421
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6603
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.37e-2

MQ
type: SiteQuality
SIO_000300: 5.376e1

QD
type: SiteQuality
SIO_000300: 7.9e0

MQRankSum
type: SiteQuality
SIO_000300: -3.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.306e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.332e0

FS
type: SiteQuality
SIO_000300: 1.298e0

DP
type: SiteQuality
SIO_000300: 5.170702e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.045e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4447
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8421
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.115238175818597e-5
allele num: 47276
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.101e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.98e-2

MQ
type: SiteQuality
SIO_000300: 5.601e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.170626e6

VQSLOD
type: SiteQuality
SIO_000300: -1.109e-1

African
type: Population
allele count: 3
allele frequency: 3.565486094604231e-4
allele num: 8414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47271
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.17e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.170146e6

MQ
type: SiteQuality
SIO_000300: 4.949e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

VQSLOD
type: SiteQuality
SIO_000300: -5.667e0

QD
type: SiteQuality
SIO_000300: 1.044e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.157e0

South Asian
type: Population
allele count: 6
allele frequency: 6.102522375915378e-4
allele num: 9832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 4.231550440081246e-4
allele num: 47264
num of homozygotes: 0

East Asian
type: Population
allele count: 25
allele frequency: 3.79247572815534e-3
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 249
allele frequency: 3.003618817852835e-2
allele num: 8290
num of homozygotes: 5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4446
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e0

DP
type: SiteQuality
SIO_000300: 5.174209e6

MQ
type: SiteQuality
SIO_000300: 4.845e1

MQRankSum
type: SiteQuality
SIO_000300: -4.525e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.13e-1

FS
type: SiteQuality
SIO_000300: 7.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.99e-1

QD
type: SiteQuality
SIO_000300: 4.5e0

VQSLOD
type: SiteQuality
SIO_000300: 1.001e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9287
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.001e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.13e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.525e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e0

FS
type: SiteQuality
SIO_000300: 7.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.99e-1

MQ
type: SiteQuality
SIO_000300: 4.845e1

QD
type: SiteQuality
SIO_000300: 4.5e0

DP
type: SiteQuality
SIO_000300: 5.174209e6

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8415
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4447
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.157736e6

MQ
type: SiteQuality
SIO_000300: 5.385e1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.23e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.275e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

QD
type: SiteQuality
SIO_000300: 1.53e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47271
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.757e0

MQ
type: SiteQuality
SIO_000300: 5.157e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.131e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.41e-2

QD
type: SiteQuality
SIO_000300: 1.362e1

DP
type: SiteQuality
SIO_000300: 5.157464e6

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 9.514747859181732e-4
allele num: 8408
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.461847644433161e-5
allele num: 47271
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9295
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

MQRankSum
type: SiteQuality
SIO_000300: 5.35e-1

DP
type: SiteQuality
SIO_000300: 5.157464e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.88e-1

FS
type: SiteQuality
SIO_000300: 3.757e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.41e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.131e0

MQ
type: SiteQuality
SIO_000300: 5.157e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-2

QD
type: SiteQuality
SIO_000300: 1.362e1

East Asian
type: Population
allele count: 24
allele frequency: 3.641329085116067e-3
allele num: 6591
num of homozygotes: 0

Latino
type: Population
allele count: 19
allele frequency: 2.044329675059178e-3
allele num: 9294
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.602564102564103e-3
allele num: 624
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 5.085435313262816e-4
allele num: 9832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 3.385311977656941e-4
allele num: 47263
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

DP
type: SiteQuality
SIO_000300: 5.155949e6

VQSLOD
type: SiteQuality
SIO_000300: 1.218e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.128e-1

FS
type: SiteQuality
SIO_000300: 1.0013e1

QD
type: SiteQuality
SIO_000300: 4.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.63e-1

MQ
type: SiteQuality
SIO_000300: 4.956e1

MQRankSum
type: SiteQuality
SIO_000300: -4.399e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4447
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 1.721911321566939e-3
allele num: 9292
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.602564102564103e-3
allele num: 624
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 5.085435313262816e-4
allele num: 9832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 3.808637142675779e-4
allele num: 47261
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.585000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 5.154059e6

QD
type: SiteQuality
SIO_000300: 4.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

MQ
type: SiteQuality
SIO_000300: 4.952e1

MQRankSum
type: SiteQuality
SIO_000300: -4.425e0

VQSLOD
type: SiteQuality
SIO_000300: 1.157e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.083e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6599
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9835
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.075962986873252e-4
allele num: 9294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.213e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.559e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.05e-1

DP
type: SiteQuality
SIO_000300: 5.152212e6

MQ
type: SiteQuality
SIO_000300: 4.882e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.77e-1

FS
type: SiteQuality
SIO_000300: 6.830000000000001e-1

QD
type: SiteQuality
SIO_000300: 3.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-1

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.249212775528565e-4
allele num: 4446
num of homozygotes: 0

African
type: Population
allele count: 203
allele frequency: 2.441664662015877e-2
allele num: 8314
num of homozygotes: 6

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 4.020398231024778e-4
allele num: 47259
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.602564102564103e-3
allele num: 624
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 1.721911321566939e-3
allele num: 9292
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.166e1

FS
type: SiteQuality
SIO_000300: 9.872e0

QD
type: SiteQuality
SIO_000300: 4.61e0

DP
type: SiteQuality
SIO_000300: 5.151646e6

MQRankSum
type: SiteQuality
SIO_000300: -4.413e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.091e-1

MQ
type: SiteQuality
SIO_000300: 4.937e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4447
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.515381118351265e-4
allele num: 6599
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.115819986035588e-5
allele num: 47263
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9835
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.528e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.72e-1

MQ
type: SiteQuality
SIO_000300: 5.244e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

FS
type: SiteQuality
SIO_000300: 7.26e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.798e0

DP
type: SiteQuality
SIO_000300: 5.129071e6

VQSLOD
type: SiteQuality
SIO_000300: -9.244e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.05e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.088e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9835
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8385
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4447
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47257
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.705e0

VQSLOD
type: SiteQuality
SIO_000300: -4.034e0

DP
type: SiteQuality
SIO_000300: 5.128322e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.42e-1

QD
type: SiteQuality
SIO_000300: 1.422e1

MQ
type: SiteQuality
SIO_000300: 4.436e1

FS
type: SiteQuality
SIO_000300: 9.622999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.011e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.851e0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.116222965251619e-5
allele num: 47254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8373
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.050330452465684e-4
allele num: 9835
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9291
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.128066e6

MQ
type: SiteQuality
SIO_000300: 5.337e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.78e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.909e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.12e0

FS
type: SiteQuality
SIO_000300: 1.37e0

QD
type: SiteQuality
SIO_000300: 8.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8363
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.116357325770883e-5
allele num: 47251
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4447
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.76e0

DP
type: SiteQuality
SIO_000300: 5.127454e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.51e0

VQSLOD
type: SiteQuality
SIO_000300: -1.072e0

MQ
type: SiteQuality
SIO_000300: 5.402e1

QD
type: SiteQuality
SIO_000300: 1.659e1

FS
type: SiteQuality
SIO_000300: 2.237e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4447
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9291
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.232893817858579e-5
allele num: 47249
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9834
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.86e-1

MQ
type: SiteQuality
SIO_000300: 5.001e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.927e0

MQRankSum
type: SiteQuality
SIO_000300: 3.89e0

VQSLOD
type: SiteQuality
SIO_000300: -1.637e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.127269e6

QD
type: SiteQuality
SIO_000300: 9.18e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.117208672086721e-5
allele num: 47232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.68e0

FS
type: SiteQuality
SIO_000300: 2.149e0

MQ
type: SiteQuality
SIO_000300: 5.139e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.178e0

DP
type: SiteQuality
SIO_000300: 5.125237e6

QD
type: SiteQuality
SIO_000300: 8.119999999999999e0

African
type: Population
allele count: 2099
allele frequency: 2.538396420365219e-1
allele num: 8269
num of homozygotes: 4

East Asian
type: Population
allele count: 593
allele frequency: 9.052053121660815e-2
allele num: 6551
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 7731
allele frequency: 1.638826472209268e-1
allele num: 47174
num of homozygotes: 18

European (Finnish)
type: Population
allele count: 739
allele frequency: 1.662916291629163e-1
allele num: 4444
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.16e0

QD
type: SiteQuality
SIO_000300: 9.65e0

FS
type: SiteQuality
SIO_000300: 7.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.511e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.86e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.521e0

DP
type: SiteQuality
SIO_000300: 5.044754e6

MQ
type: SiteQuality
SIO_000300: 4.772e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8283
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9831
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47180
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.701e0

DP
type: SiteQuality
SIO_000300: 3.44987e6

QD
type: SiteQuality
SIO_000300: 1.23e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.6e-2

MQ
type: SiteQuality
SIO_000300: 4.667e1

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.618e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.129e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9831
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.991e1

VQSLOD
type: SiteQuality
SIO_000300: -3.167e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.92e-1

DP
type: SiteQuality
SIO_000300: 3.44808e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.82e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.2e-2

QD
type: SiteQuality
SIO_000300: 3.374e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47166
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8269
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6591
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.75e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.296e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

QD
type: SiteQuality
SIO_000300: 2.34e0

DP
type: SiteQuality
SIO_000300: 3.444318e6

MQRankSum
type: SiteQuality
SIO_000300: -1.57e-1

FS
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.341e0

MQ
type: SiteQuality
SIO_000300: 4.529e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.32e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47150
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.077354018530489e-4
allele num: 9282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8253
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4446
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.439144e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.348e-1

QD
type: SiteQuality
SIO_000300: 3.033e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

MQ
type: SiteQuality
SIO_000300: 4.936e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47149
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.435111e6

VQSLOD
type: SiteQuality
SIO_000300: -1.925e0

MQ
type: SiteQuality
SIO_000300: 4.576e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e-1

FS
type: SiteQuality
SIO_000300: 3.657e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.036e0

QD
type: SiteQuality
SIO_000300: 7.39e0

MQRankSum
type: SiteQuality
SIO_000300: -9.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.176e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9829
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.016e0

DP
type: SiteQuality
SIO_000300: 3.433107e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.162e0

MQ
type: SiteQuality
SIO_000300: 4.401e1

QD
type: SiteQuality
SIO_000300: 9.800000000000001e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6583
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9829
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e-1

MQ
type: SiteQuality
SIO_000300: 4.401e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.162e0

QD
type: SiteQuality
SIO_000300: 9.800000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -1.016e0

MQRankSum
type: SiteQuality
SIO_000300: -3.99e-1

DP
type: SiteQuality
SIO_000300: 3.433107e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e-1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.121295687405868e-5
allele num: 47141
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9829
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8243
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.108e0

MQRankSum
type: SiteQuality
SIO_000300: -1.444e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.384e0

QD
type: SiteQuality
SIO_000300: 2.434e1

DP
type: SiteQuality
SIO_000300: 3.43048e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

MQ
type: SiteQuality
SIO_000300: 4.512e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -9.154e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47137
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.017293997965412e-4
allele num: 9830
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.423915e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 2.213e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.54e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.125e0

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-2

MQ
type: SiteQuality
SIO_000300: 4.217e1

QD
type: SiteQuality
SIO_000300: 5.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.032e0