19-43709700-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43709700
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43709700
    reference: chr 19
allele count: 8
allele frequency: 6.879353340785966e-5
allele num: 116290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000244295
  ensembl transcript: ENST00000244295
  gene symbol: PSG4
  hgvsc: ENST00000244295.9:c.-12G>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000472885
  ensembl transcript: ENST00000599391
  gene symbol: PSG4
  hgvsc: ENST00000599391.1:c.-12G>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000387864
  ensembl transcript: ENST00000433626
  gene symbol: PSG4
  hgvsc: ENST00000433626.2:c.-12G>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000596199
  gene symbol: PSG4
  hgvsc: ENST00000596199.1:n.91G>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000388134
  ensembl transcript: ENST00000451895
  gene symbol: PSG4
  hgvsc: ENST00000451895.1:c.-149G>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000472243
  ensembl transcript: ENST00000595949
  gene symbol: PSG4
  hgvsc: ENST00000595949.1:c.-12G>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000471124
  ensembl transcript: ENST00000596907
  gene symbol: PSG4
  hgvsc: ENST00000596907.1:c.-12G>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000597912
  gene symbol: PSG4
  hgvsc: ENST00000597912.1:n.1131+621G>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000470992
  ensembl transcript: ENST00000601041
  gene symbol: PSG4
  hgvsc: ENST00000601041.1:c.-12G>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000384770
  ensembl transcript: ENST00000405312
  gene symbol: PSG4
  hgvsc: ENST00000405312.3:c.-12G>A
  variant of: http://identifiers.org/hgnc/9521
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP

19-43709700-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43709700
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43709700
    reference: chr 19
allele count: 1
allele frequency: 8.599191675982458e-6
allele num: 116290
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000471124
  ensembl transcript: ENST00000596907
  gene symbol: PSG4
  hgvsc: ENST00000596907.1:c.-12G>C
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000472885
  ensembl transcript: ENST00000599391
  gene symbol: PSG4
  hgvsc: ENST00000599391.1:c.-12G>C
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000597912
  gene symbol: PSG4
  hgvsc: ENST00000597912.1:n.1131+621G>C
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000388134
  ensembl transcript: ENST00000451895
  gene symbol: PSG4
  hgvsc: ENST00000451895.1:c.-149G>C
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000470992
  ensembl transcript: ENST00000601041
  gene symbol: PSG4
  hgvsc: ENST00000601041.1:c.-12G>C
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000472243
  ensembl transcript: ENST00000595949
  gene symbol: PSG4
  hgvsc: ENST00000595949.1:c.-12G>C
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000384770
  ensembl transcript: ENST00000405312
  gene symbol: PSG4
  hgvsc: ENST00000405312.3:c.-12G>C
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000387864
  ensembl transcript: ENST00000433626
  gene symbol: PSG4
  hgvsc: ENST00000433626.2:c.-12G>C
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000244295
  ensembl transcript: ENST00000244295
  gene symbol: PSG4
  hgvsc: ENST00000244295.9:c.-12G>C
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000596199
  gene symbol: PSG4
  hgvsc: ENST00000596199.1:n.91G>C
  variant of: http://identifiers.org/hgnc/9521
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2534
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD

19-43709700-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43709700
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43709698
    reference: chr 19
allele count: 2
allele frequency: 1.719838335196492e-5
allele num: 116290
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000470992
  ensembl transcript: ENST00000601041
  gene symbol: PSG4
  hgvsc: ENST00000601041.1:c.-14_-13delAA
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000597912
  gene symbol: PSG4
  hgvsc: ENST00000597912.1:n.1131+619_1131+620delAA
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000471124
  ensembl transcript: ENST00000596907
  gene symbol: PSG4
  hgvsc: ENST00000596907.1:c.-14_-13delAA
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000596199
  gene symbol: PSG4
  hgvsc: ENST00000596199.1:n.89_90delAA
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000472885
  ensembl transcript: ENST00000599391
  gene symbol: PSG4
  hgvsc: ENST00000599391.1:c.-14_-13delAA
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000388134
  ensembl transcript: ENST00000451895
  gene symbol: PSG4
  hgvsc: ENST00000451895.1:c.-151_-150delAA
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000244295
  ensembl transcript: ENST00000244295
  gene symbol: PSG4
  hgvsc: ENST00000244295.9:c.-14_-13delAA
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000387864
  ensembl transcript: ENST00000433626
  gene symbol: PSG4
  hgvsc: ENST00000433626.2:c.-14_-13delAA
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000384770
  ensembl transcript: ENST00000405312
  gene symbol: PSG4
  hgvsc: ENST00000405312.3:c.-14_-13delAA
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000472243
  ensembl transcript: ENST00000595949
  gene symbol: PSG4
  hgvsc: ENST00000595949.1:c.-14_-13delAA
  variant of: http://identifiers.org/hgnc/9521
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: CTT
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

19-43709701-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43709701
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43709701
    reference: chr 19
allele count: 3120
allele frequency: 2.687801516195727e-2
allele num: 116080
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000470992
  ensembl transcript: ENST00000601041
  gene symbol: PSG4
  hgvsc: ENST00000601041.1:c.-13A>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000472885
  ensembl transcript: ENST00000599391
  gene symbol: PSG4
  hgvsc: ENST00000599391.1:c.-13A>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000387864
  ensembl transcript: ENST00000433626
  gene symbol: PSG4
  hgvsc: ENST00000433626.2:c.-13A>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000472243
  ensembl transcript: ENST00000595949
  gene symbol: PSG4
  hgvsc: ENST00000595949.1:c.-13A>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000597912
  gene symbol: PSG4
  hgvsc: ENST00000597912.1:n.1131+620A>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000388134
  ensembl transcript: ENST00000451895
  gene symbol: PSG4
  hgvsc: ENST00000451895.1:c.-150A>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000244295
  ensembl transcript: ENST00000244295
  gene symbol: PSG4
  hgvsc: ENST00000244295.9:c.-13A>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000384770
  ensembl transcript: ENST00000405312
  gene symbol: PSG4
  hgvsc: ENST00000405312.3:c.-13A>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000471124
  ensembl transcript: ENST00000596907
  gene symbol: PSG4
  hgvsc: ENST00000596907.1:c.-13A>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000596199
  gene symbol: PSG4
  hgvsc: ENST00000596199.1:n.90A>G
  variant of: http://identifiers.org/hgnc/9521
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 6.25e1
  variant carriers: 146
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 3.75e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 7.75e1
  variant carriers: 228
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 7.25e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 5.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.75e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 8.75e1
  variant carriers: 200
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 2.25e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 4378
  bin: 6.75e1
  variant carriers: 183
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4262
  bin: 3.25e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 1.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 5.75e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 4.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 5204
  bin: 2.75e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 5576
  bin: 9.75e1
  variant carriers: 706
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 9.25e1
  variant carriers: 187
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.5e0
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 8.25e1
  variant carriers: 216
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 4.75e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 7.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 7.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.25e1
  variant carriers: 12
num of homozygotes: 231
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-43709704-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43709704
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43709704
    reference: chr 19
allele count: 34
allele frequency: 2.926594133039526e-4
allele num: 116176
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000384770
  ensembl transcript: ENST00000405312
  gene symbol: PSG4
  hgvsc: ENST00000405312.3:c.-16A>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000470992
  ensembl transcript: ENST00000601041
  gene symbol: PSG4
  hgvsc: ENST00000601041.1:c.-16A>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000596199
  gene symbol: PSG4
  hgvsc: ENST00000596199.1:n.87A>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000597912
  gene symbol: PSG4
  hgvsc: ENST00000597912.1:n.1131+617A>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000244295
  ensembl transcript: ENST00000244295
  gene symbol: PSG4
  hgvsc: ENST00000244295.9:c.-16A>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000387864
  ensembl transcript: ENST00000433626
  gene symbol: PSG4
  hgvsc: ENST00000433626.2:c.-16A>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000472243
  ensembl transcript: ENST00000595949
  gene symbol: PSG4
  hgvsc: ENST00000595949.1:c.-16A>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000388134
  ensembl transcript: ENST00000451895
  gene symbol: PSG4
  hgvsc: ENST00000451895.1:c.-153A>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000471124
  ensembl transcript: ENST00000596907
  gene symbol: PSG4
  hgvsc: ENST00000596907.1:c.-16A>G
  variant of: http://identifiers.org/hgnc/9521
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4702
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4257
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5224
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3106
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1600
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 5
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum

19-43709705-G-GCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43709705
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43709707
    reference: chr 19
allele count: 2
allele frequency: 1.721377790783743e-5
allele num: 116186
alternate allele: GCA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000597912
  gene symbol: PSG4
  hgvsc: ENST00000597912.1:n.1131+615_1131+616insTG
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000244295
  ensembl transcript: ENST00000244295
  gene symbol: PSG4
  hgvsc: ENST00000244295.9:c.-18_-17insTG
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000388134
  ensembl transcript: ENST00000451895
  gene symbol: PSG4
  hgvsc: ENST00000451895.1:c.-155_-154insTG
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000470992
  ensembl transcript: ENST00000601041
  gene symbol: PSG4
  hgvsc: ENST00000601041.1:c.-18_-17insTG
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000472243
  ensembl transcript: ENST00000595949
  gene symbol: PSG4
  hgvsc: ENST00000595949.1:c.-18_-17insTG
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000471124
  ensembl transcript: ENST00000596907
  gene symbol: PSG4
  hgvsc: ENST00000596907.1:c.-18_-17insTG
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000384770
  ensembl transcript: ENST00000405312
  gene symbol: PSG4
  hgvsc: ENST00000405312.3:c.-18_-17insTG
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000596199
  gene symbol: PSG4
  hgvsc: ENST00000596199.1:n.85_86insTG
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000387864
  ensembl transcript: ENST00000433626
  gene symbol: PSG4
  hgvsc: ENST00000433626.2:c.-18_-17insTG
  variant of: http://identifiers.org/hgnc/9521
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5082
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4831
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2553
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6508
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD

19-43709708-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43709708
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43709708
    reference: chr 19
allele count: 561
allele frequency: 4.831625183016106e-3
allele num: 116110
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000471124
  ensembl transcript: ENST00000596907
  gene symbol: PSG4
  hgvsc: ENST00000596907.1:c.-20A>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000472243
  ensembl transcript: ENST00000595949
  gene symbol: PSG4
  hgvsc: ENST00000595949.1:c.-20A>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000384770
  ensembl transcript: ENST00000405312
  gene symbol: PSG4
  hgvsc: ENST00000405312.3:c.-20A>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000244295
  ensembl transcript: ENST00000244295
  gene symbol: PSG4
  hgvsc: ENST00000244295.9:c.-20A>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000388134
  ensembl transcript: ENST00000451895
  gene symbol: PSG4
  hgvsc: ENST00000451895.1:c.-157A>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000596199
  gene symbol: PSG4
  hgvsc: ENST00000596199.1:n.83A>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000470992
  ensembl transcript: ENST00000601041
  gene symbol: PSG4
  hgvsc: ENST00000601041.1:c.-20A>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000387864
  ensembl transcript: ENST00000433626
  gene symbol: PSG4
  hgvsc: ENST00000433626.2:c.-20A>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000597912
  gene symbol: PSG4
  hgvsc: ENST00000597912.1:n.1131+613A>G
  variant of: http://identifiers.org/hgnc/9521
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 9.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 6.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 7.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 7.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 8.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 5083
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 5086
  bin: 9.75e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 8.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 4438
  bin: 6.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.25e1
  variant carriers: 3
num of homozygotes: 112
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-43709713-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43709713
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43709713
    reference: chr 19
allele count: 1
allele frequency: 8.620541025154739e-6
allele num: 116002
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000387864
  ensembl transcript: ENST00000433626
  gene symbol: PSG4
  hgvsc: ENST00000433626.2:c.-25G>T
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000384770
  ensembl transcript: ENST00000405312
  gene symbol: PSG4
  hgvsc: ENST00000405312.3:c.-25G>T
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000472243
  ensembl transcript: ENST00000595949
  gene symbol: PSG4
  hgvsc: ENST00000595949.1:c.-25G>T
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000471124
  ensembl transcript: ENST00000596907
  gene symbol: PSG4
  hgvsc: ENST00000596907.1:c.-25G>T
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000388134
  ensembl transcript: ENST00000451895
  gene symbol: PSG4
  hgvsc: ENST00000451895.1:c.-162G>T
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000470992
  ensembl transcript: ENST00000601041
  gene symbol: PSG4
  hgvsc: ENST00000601041.1:c.-25G>T
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000244295
  ensembl transcript: ENST00000244295
  gene symbol: PSG4
  hgvsc: ENST00000244295.9:c.-25G>T
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000597912
  gene symbol: PSG4
  hgvsc: ENST00000597912.1:n.1131+608G>T
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000596199
  gene symbol: PSG4
  hgvsc: ENST00000596199.1:n.78G>T
  variant of: http://identifiers.org/hgnc/9521
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4724
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1612
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6036
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/19-43709715-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43709715
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43709715
    reference: chr 19
allele count: 1
allele frequency: 8.622622311897494e-6
allele num: 115974
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000470992
  ensembl transcript: ENST00000601041
  gene symbol: PSG4
  hgvsc: ENST00000601041.1:c.-27G>T
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000472243
  ensembl transcript: ENST00000595949
  gene symbol: PSG4
  hgvsc: ENST00000595949.1:c.-27G>T
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000387864
  ensembl transcript: ENST00000433626
  gene symbol: PSG4
  hgvsc: ENST00000433626.2:c.-27G>T
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000384770
  ensembl transcript: ENST00000405312
  gene symbol: PSG4
  hgvsc: ENST00000405312.3:c.-27G>T
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000596199
  gene symbol: PSG4
  hgvsc: ENST00000596199.1:n.76G>T
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000597912
  gene symbol: PSG4
  hgvsc: ENST00000597912.1:n.1131+606G>T
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000244295
  ensembl transcript: ENST00000244295
  gene symbol: PSG4
  hgvsc: ENST00000244295.9:c.-27G>T
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000471124
  ensembl transcript: ENST00000596907
  gene symbol: PSG4
  hgvsc: ENST00000596907.1:c.-27G>T
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000388134
  ensembl transcript: ENST00000451895
  gene symbol: PSG4
  hgvsc: ENST00000451895.1:c.-164G>T
  variant of: http://identifiers.org/hgnc/9521
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40417
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP

19-43709717-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43709717
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43709717
    reference: chr 19
allele count: 1
allele frequency: 8.623812069887374e-6
allele num: 115958
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000597912
  gene symbol: PSG4
  hgvsc: ENST00000597912.1:n.1131+604C>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000388134
  ensembl transcript: ENST00000451895
  gene symbol: PSG4
  hgvsc: ENST00000451895.1:c.-166C>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000596199
  gene symbol: PSG4
  hgvsc: ENST00000596199.1:n.74C>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000471124
  ensembl transcript: ENST00000596907
  gene symbol: PSG4
  hgvsc: ENST00000596907.1:c.-29C>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000387864
  ensembl transcript: ENST00000433626
  gene symbol: PSG4
  hgvsc: ENST00000433626.2:c.-29C>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000470992
  ensembl transcript: ENST00000601041
  gene symbol: PSG4
  hgvsc: ENST00000601041.1:c.-29C>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000472243
  ensembl transcript: ENST00000595949
  gene symbol: PSG4
  hgvsc: ENST00000595949.1:c.-29C>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000384770
  ensembl transcript: ENST00000405312
  gene symbol: PSG4
  hgvsc: ENST00000405312.3:c.-29C>G
  variant of: http://identifiers.org/hgnc/9521
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5551
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2317
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

19-43709720-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43709720
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43709720
    reference: chr 19
allele count: 1
allele frequency: 8.628425484917513e-6
allele num: 115896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000472243
  ensembl transcript: ENST00000595949
  gene symbol: PSG4
  hgvsc: ENST00000595949.1:c.-32C>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000471124
  ensembl transcript: ENST00000596907
  gene symbol: PSG4
  hgvsc: ENST00000596907.1:c.-32C>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000596199
  gene symbol: PSG4
  hgvsc: ENST00000596199.1:n.71C>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000388134
  ensembl transcript: ENST00000451895
  gene symbol: PSG4
  hgvsc: ENST00000451895.1:c.-169C>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000384770
  ensembl transcript: ENST00000405312
  gene symbol: PSG4
  hgvsc: ENST00000405312.3:c.-32C>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000387864
  ensembl transcript: ENST00000433626
  gene symbol: PSG4
  hgvsc: ENST00000433626.2:c.-32C>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000597912
  gene symbol: PSG4
  hgvsc: ENST00000597912.1:n.1131+601C>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000470992
  ensembl transcript: ENST00000601041
  gene symbol: PSG4
  hgvsc: ENST00000601041.1:c.-32C>A
  variant of: http://identifiers.org/hgnc/9521
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5357
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1534
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2287
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

19-43709721-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43709721
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43709721
    reference: chr 19
allele count: 1
allele frequency: 8.634683797879321e-6
allele num: 115812
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000388134
  ensembl transcript: ENST00000451895
  gene symbol: PSG4
  hgvsc: ENST00000451895.1:c.-170T>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000471124
  ensembl transcript: ENST00000596907
  gene symbol: PSG4
  hgvsc: ENST00000596907.1:c.-33T>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000470992
  ensembl transcript: ENST00000601041
  gene symbol: PSG4
  hgvsc: ENST00000601041.1:c.-33T>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000472243
  ensembl transcript: ENST00000595949
  gene symbol: PSG4
  hgvsc: ENST00000595949.1:c.-33T>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000384770
  ensembl transcript: ENST00000405312
  gene symbol: PSG4
  hgvsc: ENST00000405312.3:c.-33T>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000387864
  ensembl transcript: ENST00000433626
  gene symbol: PSG4
  hgvsc: ENST00000433626.2:c.-33T>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000596199
  gene symbol: PSG4
  hgvsc: ENST00000596199.1:n.70T>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000597912
  gene symbol: PSG4
  hgvsc: ENST00000597912.1:n.1131+600T>A
  variant of: http://identifiers.org/hgnc/9521
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4878
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40419
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1534
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/19-43709723-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43709723
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43709723
    reference: chr 19
allele count: 28
allele frequency: 2.417294012017404e-4
allele num: 115832
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000596199
  gene symbol: PSG4
  hgvsc: ENST00000596199.1:n.68T>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000388134
  ensembl transcript: ENST00000451895
  gene symbol: PSG4
  hgvsc: ENST00000451895.1:c.-172T>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000470992
  ensembl transcript: ENST00000601041
  gene symbol: PSG4
  hgvsc: ENST00000601041.1:c.-35T>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000384770
  ensembl transcript: ENST00000405312
  gene symbol: PSG4
  hgvsc: ENST00000405312.3:c.-35T>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000472243
  ensembl transcript: ENST00000595949
  gene symbol: PSG4
  hgvsc: ENST00000595949.1:c.-35T>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000387864
  ensembl transcript: ENST00000433626
  gene symbol: PSG4
  hgvsc: ENST00000433626.2:c.-35T>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000597912
  gene symbol: PSG4
  hgvsc: ENST00000597912.1:n.1131+598T>G
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000471124
  ensembl transcript: ENST00000596907
  gene symbol: PSG4
  hgvsc: ENST00000596907.1:c.-35T>G
  variant of: http://identifiers.org/hgnc/9521
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2968
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4841
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 2
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: A
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-43709725-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43709725
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43709725
    reference: chr 19
allele count: 5860
allele frequency: 5.070169063316548e-2
allele num: 115578
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000596199
  gene symbol: PSG4
  hgvsc: ENST00000596199.1:n.66T>C
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000471124
  ensembl transcript: ENST00000596907
  gene symbol: PSG4
  hgvsc: ENST00000596907.1:c.-37T>C
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000384770
  ensembl transcript: ENST00000405312
  gene symbol: PSG4
  hgvsc: ENST00000405312.3:c.-37T>C
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000470992
  ensembl transcript: ENST00000601041
  gene symbol: PSG4
  hgvsc: ENST00000601041.1:c.-37T>C
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000388134
  ensembl transcript: ENST00000451895
  gene symbol: PSG4
  hgvsc: ENST00000451895.1:c.-174T>C
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000472243
  ensembl transcript: ENST00000595949
  gene symbol: PSG4
  hgvsc: ENST00000595949.1:c.-37T>C
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000597912
  gene symbol: PSG4
  hgvsc: ENST00000597912.1:n.1131+596T>C
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000387864
  ensembl transcript: ENST00000433626
  gene symbol: PSG4
  hgvsc: ENST00000433626.2:c.-37T>C
  variant of: http://identifiers.org/hgnc/9521
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 1.75e1
  variant carriers: 195
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 4.25e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 7.5e0
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 2.25e1
  variant carriers: 214
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 2.75e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 1.25e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 8.75e1
  variant carriers: 240
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 9.25e1
  variant carriers: 191
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 2.5e0
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 7.25e1
  variant carriers: 399
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 7.75e1
  variant carriers: 339
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 6.75e1
  variant carriers: 428
genotype depth: GenotypeDepth
  all individuals: 3092
  bin: 3.75e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 5.75e1
  variant carriers: 424
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 8.25e1
  variant carriers: 284
genotype depth: GenotypeDepth
  all individuals: 4845
  bin: 6.25e1
  variant carriers: 401
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 5.25e1
  variant carriers: 364
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 4.75e1
  variant carriers: 257
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 3.25e1
  variant carriers: 148
genotype depth: GenotypeDepth
  all individuals: 4939
  bin: 9.75e1
  variant carriers: 870
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 7.5e0
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.25e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 3.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 7.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 4.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.5e0
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 8.25e1
  variant carriers: 29
num of homozygotes: 558
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

19-43709731-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43709731
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43709731
    reference: chr 19
allele count: 1
allele frequency: 8.657558914688415e-6
allele num: 115506
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000384770
  ensembl transcript: ENST00000405312
  gene symbol: PSG4
  hgvsc: ENST00000405312.3:c.-43T>C
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000472243
  ensembl transcript: ENST00000595949
  gene symbol: PSG4
  hgvsc: ENST00000595949.1:c.-43T>C
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000471124
  ensembl transcript: ENST00000596907
  gene symbol: PSG4
  hgvsc: ENST00000596907.1:c.-43T>C
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000470992
  ensembl transcript: ENST00000601041
  gene symbol: PSG4
  hgvsc: ENST00000601041.1:c.-43T>C
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000387864
  ensembl transcript: ENST00000433626
  gene symbol: PSG4
  hgvsc: ENST00000433626.2:c.-43T>C
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000596199
  gene symbol: PSG4
  hgvsc: ENST00000596199.1:n.60T>C
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000597912
  gene symbol: PSG4
  hgvsc: ENST00000597912.1:n.1131+590T>C
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000388134
  ensembl transcript: ENST00000451895
  gene symbol: PSG4
  hgvsc: ENST00000451895.1:c.-180T>C
  variant of: http://identifiers.org/hgnc/9521
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4799
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4418
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2026
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

19-43709732-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43709732
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43709732
    reference: chr 19
allele count: 11
allele frequency: 9.524139364133823e-5
allele num: 115496
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000387864
  ensembl transcript: ENST00000433626
  gene symbol: PSG4
  hgvsc: ENST00000433626.2:c.-44C>T
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000384770
  ensembl transcript: ENST00000405312
  gene symbol: PSG4
  hgvsc: ENST00000405312.3:c.-44C>T
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000472243
  ensembl transcript: ENST00000595949
  gene symbol: PSG4
  hgvsc: ENST00000595949.1:c.-44C>T
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000597912
  gene symbol: PSG4
  hgvsc: ENST00000597912.1:n.1131+589C>T
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000596199
  gene symbol: PSG4
  hgvsc: ENST00000596199.1:n.59C>T
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000470992
  ensembl transcript: ENST00000601041
  gene symbol: PSG4
  hgvsc: ENST00000601041.1:c.-44C>T
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000471124
  ensembl transcript: ENST00000596907
  gene symbol: PSG4
  hgvsc: ENST00000596907.1:c.-44C>T
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000388134
  ensembl transcript: ENST00000451895
  gene symbol: PSG4
  hgvsc: ENST00000451895.1:c.-181C>T
  variant of: http://identifiers.org/hgnc/9521
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4799
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4477
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1084
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1495
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 2
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

19-43709734-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43709734
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43709734
    reference: chr 19
allele count: 2
allele frequency: 1.73190162798753e-5
allele num: 115480
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000471124
  ensembl transcript: ENST00000596907
  gene symbol: PSG4
  hgvsc: ENST00000596907.1:c.-46T>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000596199
  gene symbol: PSG4
  hgvsc: ENST00000596199.1:n.57T>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000384770
  ensembl transcript: ENST00000405312
  gene symbol: PSG4
  hgvsc: ENST00000405312.3:c.-46T>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000472243
  ensembl transcript: ENST00000595949
  gene symbol: PSG4
  hgvsc: ENST00000595949.1:c.-46T>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000388134
  ensembl transcript: ENST00000451895
  gene symbol: PSG4
  hgvsc: ENST00000451895.1:c.-183T>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000387864
  ensembl transcript: ENST00000433626
  gene symbol: PSG4
  hgvsc: ENST00000433626.2:c.-46T>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000597912
  gene symbol: PSG4
  hgvsc: ENST00000597912.1:n.1131+587T>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000470992
  ensembl transcript: ENST00000601041
  gene symbol: PSG4
  hgvsc: ENST00000601041.1:c.-46T>A
  variant of: http://identifiers.org/hgnc/9521
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3769
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4800
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4477
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2022
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ

19-43709736-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43709736
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43709736
    reference: chr 19
allele count: 1
allele frequency: 8.67799434194769e-6
allele num: 115234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000470992
  ensembl transcript: ENST00000601041
  gene symbol: PSG4
  hgvsc: ENST00000601041.1:c.-48G>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000472243
  ensembl transcript: ENST00000595949
  gene symbol: PSG4
  hgvsc: ENST00000595949.1:c.-48G>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000471124
  ensembl transcript: ENST00000596907
  gene symbol: PSG4
  hgvsc: ENST00000596907.1:c.-48G>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000387864
  ensembl transcript: ENST00000433626
  gene symbol: PSG4
  hgvsc: ENST00000433626.2:c.-48G>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000596199
  gene symbol: PSG4
  hgvsc: ENST00000596199.1:n.55G>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000388134
  ensembl transcript: ENST00000451895
  gene symbol: PSG4
  hgvsc: ENST00000451895.1:c.-185G>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000243137
  ensembl transcript: ENST00000597912
  gene symbol: PSG4
  hgvsc: ENST00000597912.1:n.1131+585G>A
  variant of: http://identifiers.org/hgnc/9521
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000243137
  ensembl protein: ENSP00000384770
  ensembl transcript: ENST00000405312
  gene symbol: PSG4
  hgvsc: ENST00000405312.3:c.-48G>A
  variant of: http://identifiers.org/hgnc/9521
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4404
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4800
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

19-43716565-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43716565
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43716565
    reference: chr 19
allele count: 1
allele frequency: 9.820867379006914e-6
allele num: 101824
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2208A>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.*46A>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241104
  ensembl transcript: ENST00000489959
  gene symbol: CEACAMP10
  hgvsc: ENST00000489959.1:n.1099A>G
  variant of: http://identifiers.org/hgnc/1822
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6029
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3365
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10779
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8462
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19229
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3510
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-43716567-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43716567
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43716567
    reference: chr 19
allele count: 4
allele frequency: 3.938558487593541e-5
allele num: 101560
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.*44G>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2206G>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241104
  ensembl transcript: ENST00000489959
  gene symbol: CEACAMP10
  hgvsc: ENST00000489959.1:n.1097G>T
  variant of: http://identifiers.org/hgnc/1822
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6042
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3482
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1866
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8618
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1832
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10770
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19239
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 5.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP

19-43716567-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43716567
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43716567
    reference: chr 19
allele count: 30
allele frequency: 2.953918865695155e-4
allele num: 101560
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.*44G>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2206G>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241104
  ensembl transcript: ENST00000489959
  gene symbol: CEACAMP10
  hgvsc: ENST00000489959.1:n.1097G>A
  variant of: http://identifiers.org/hgnc/1822
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 6714
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4632
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6025
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6042
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3482
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1832
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8618
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 10770
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1866
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19239
  bin: 9.75e1
  variant carriers: 19
num of homozygotes: 1
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS

19-43716568-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43716568
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43716568
    reference: chr 19
allele count: 7
allele frequency: 6.915082783419608e-5
allele num: 101228
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.*43C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2205C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241104
  ensembl transcript: ENST00000489959
  gene symbol: CEACAMP10
  hgvsc: ENST00000489959.1:n.1096C>T
  variant of: http://identifiers.org/hgnc/1822
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6919
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6057
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3559
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7846
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1578
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3416
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8682
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1934
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1748
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1926
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10181
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19219
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

19-43716569-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43716569
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43716569
    reference: chr 19
allele count: 5680
allele frequency: 5.652303711812121e-2
allele num: 100490
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241104
  ensembl transcript: ENST00000489959
  gene symbol: CEACAMP10
  hgvsc: ENST00000489959.1:n.1095A>G
  variant of: http://identifiers.org/hgnc/1822
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2204A>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.*42A>G
  variant of: http://identifiers.org/hgnc/9526
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 9.75e1
  variant carriers: 241
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 2.5e0
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 8.25e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 1.75e1
  variant carriers: 862
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 5.75e1
  variant carriers: 209
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.25e1
  variant carriers: 197
genotype depth: GenotypeDepth
  all individuals: 3346
  bin: 4.75e1
  variant carriers: 205
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 7.5e0
  variant carriers: 289
genotype depth: GenotypeDepth
  all individuals: 6923
  bin: 1.25e1
  variant carriers: 607
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.25e1
  variant carriers: 160
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 3.25e1
  variant carriers: 352
genotype depth: GenotypeDepth
  all individuals: 7838
  bin: 2.75e1
  variant carriers: 591
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 3.75e1
  variant carriers: 248
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.75e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 5729
  bin: 2.25e1
  variant carriers: 807
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 6.75e1
  variant carriers: 201
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 4.25e1
  variant carriers: 194
genotype depth: GenotypeDepth
  all individuals: 2990
  bin: 5.25e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.25e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 1.25e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 3.75e1
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 5.25e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 9959
  bin: 6.25e1
  variant carriers: 94
genotype quality: GenotypeQuality
  all individuals: 21079
  bin: 9.75e1
  variant carriers: 4170
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 2.5e0
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 3187
  bin: 6.75e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 8.75e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 1834
  bin: 7.75e1
  variant carriers: 93
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 7.25e1
  variant carriers: 83
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 3.25e1
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 9.25e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 1.75e1
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.75e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 8685
  bin: 2.25e1
  variant carriers: 121
genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 2.75e1
  variant carriers: 73
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 7.5e0
  variant carriers: 89
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 4.25e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 8.25e1
  variant carriers: 83
num of homozygotes: 397
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

19-43716570-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43716570
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43716570
    reference: chr 19
allele count: 1
allele frequency: 1.000960922485586e-5
allele num: 99904
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.*41C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241104
  ensembl transcript: ENST00000489959
  gene symbol: CEACAMP10
  hgvsc: ENST00000489959.1:n.1094C>T
  variant of: http://identifiers.org/hgnc/1822
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2203C>T
  variant of: http://identifiers.org/hgnc/9526
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7811
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6546
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2154
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18511
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9833
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1872
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10366
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1833
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3307
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

19-43716576-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43716576
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43716576
    reference: chr 19
allele count: 1
allele frequency: 1.018143313852858e-5
allele num: 98218
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2197T>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241104
  ensembl transcript: ENST00000489959
  gene symbol: CEACAMP10
  hgvsc: ENST00000489959.1:n.1088T>C
  variant of: http://identifiers.org/hgnc/1822
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.*35T>C
  variant of: http://identifiers.org/hgnc/9526
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6632
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8593
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18508
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2047
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9557
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2782
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2517
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1559
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8306
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

19-43716580-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43716580
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43716580
    reference: chr 19
allele count: 1
allele frequency: 1.020366515652422e-5
allele num: 98004
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.*31C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241104
  ensembl transcript: ENST00000489959
  gene symbol: CEACAMP10
  hgvsc: ENST00000489959.1:n.1084C>T
  variant of: http://identifiers.org/hgnc/1822
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2193C>T
  variant of: http://identifiers.org/hgnc/9526
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8551
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6762
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2883
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1641
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9869
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genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

19-43716585-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43716585
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43716585
    reference: chr 19
allele count: 1
allele frequency: 1.025472742934493e-5
allele num: 97516
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241104
  ensembl transcript: ENST00000489959
  gene symbol: CEACAMP10
  hgvsc: ENST00000489959.1:n.1079T>C
  variant of: http://identifiers.org/hgnc/1822
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2188T>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.*26T>C
  variant of: http://identifiers.org/hgnc/9526
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6874
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1686
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2465
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

19-43716587-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43716587
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43716587
    reference: chr 19
allele count: 1
allele frequency: 1.0290394945358e-5
allele num: 97178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2186A>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.*24A>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241104
  ensembl transcript: ENST00000489959
  gene symbol: CEACAMP10
  hgvsc: ENST00000489959.1:n.1077A>T
  variant of: http://identifiers.org/hgnc/1822
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6962
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6145
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18503
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2735
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8335
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3166
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2443
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-43716602-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43716602
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43716602
    reference: chr 19
allele count: 15
allele frequency: 1.572986577181208e-4
allele num: 95360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2171A>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.*9A>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241104
  ensembl transcript: ENST00000489959
  gene symbol: CEACAMP10
  hgvsc: ENST00000489959.1:n.1062A>G
  variant of: http://identifiers.org/hgnc/1822
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 7295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3486
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3373
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3938
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8201
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8886
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3029
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1976
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3738
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18502
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2215
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1626
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7072
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

19-43716615-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43716615
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43716615
    reference: chr 19
allele count: 4
allele frequency: 4.284765516207125e-5
allele num: 93354
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241104
  ensembl transcript: ENST00000489959
  gene symbol: CEACAMP10
  hgvsc: ENST00000489959.1:n.1049C>T
  variant of: http://identifiers.org/hgnc/1822
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.977C>T
  hgvsp: ENSP00000400484.2:p.Pro326Leu
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2158C>T
  variant of: http://identifiers.org/hgnc/9526
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7945
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3766
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2031
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 2182
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1623
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1662
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3050
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro326Leu
num of homozygotes: 1
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-43716617-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43716617
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43716617
    reference: chr 19
allele count: 1
allele frequency: 1.072110127152261e-5
allele num: 93274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2156A>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.975A>T
  hgvsp: ENSP00000400484.2:p.Leu325Phe
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241104
  ensembl transcript: ENST00000489959
  gene symbol: CEACAMP10
  hgvsc: ENST00000489959.1:n.1047A>T
  variant of: http://identifiers.org/hgnc/1822
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7516
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1606
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6970
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5820
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18499
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2042
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu325Phe
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

19-43716618-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43716618
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43716618
    reference: chr 19
allele count: 1
allele frequency: 1.069907773949885e-5
allele num: 93466
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2155T>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241104
  ensembl transcript: ENST00000489959
  gene symbol: CEACAMP10
  hgvsc: ENST00000489959.1:n.1046T>C
  variant of: http://identifiers.org/hgnc/1822
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.974T>C
  hgvsp: ENSP00000400484.2:p.Leu325Ser
  variant of: http://identifiers.org/hgnc/9526
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7992
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3723
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7135
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3087
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18498
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1628
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1997
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5982
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu325Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

19-43716621-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43716621
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43716621
    reference: chr 19
allele count: 41857
allele frequency: 4.999402799675123e-1
allele num: 83724
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.971T>C
  hgvsp: ENSP00000400484.2:p.Ile324Thr
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2152T>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241104
  ensembl transcript: ENST00000489959
  gene symbol: CEACAMP10
  hgvsc: ENST00000489959.1:n.1043T>C
  variant of: http://identifiers.org/hgnc/1822
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 4.25e1
  variant carriers: 1833
genotype depth: GenotypeDepth
  all individuals: 7379
  bin: 7.5e0
  variant carriers: 6987
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 5.25e1
  variant carriers: 1834
genotype depth: GenotypeDepth
  all individuals: 3995
  bin: 2.25e1
  variant carriers: 2753
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 6.25e1
  variant carriers: 1202
genotype depth: GenotypeDepth
  all individuals: 3705
  bin: 3.25e1
  variant carriers: 1383
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 5.75e1
  variant carriers: 1507
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 3.75e1
  variant carriers: 1649
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.25e1
  variant carriers: 166
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 2.5e0
  variant carriers: 1803
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 6.75e1
  variant carriers: 891
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 2.75e1
  variant carriers: 1580
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 7.25e1
  variant carriers: 648
genotype depth: GenotypeDepth
  all individuals: 5202
  bin: 1.75e1
  variant carriers: 4998
genotype depth: GenotypeDepth
  all individuals: 7259
  bin: 1.25e1
  variant carriers: 6952
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.25e1
  variant carriers: 276
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 4.75e1
  variant carriers: 1849
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 9.75e1
  variant carriers: 847
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.75e1
  variant carriers: 463
genotype quality: GenotypeQuality
  all individuals: 2614
  bin: 4.75e1
  variant carriers: 2367
genotype quality: GenotypeQuality
  all individuals: 2454
  bin: 7.5e0
  variant carriers: 1727
genotype quality: GenotypeQuality
  all individuals: 3513
  bin: 1.75e1
  variant carriers: 3095
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 4.25e1
  variant carriers: 1621
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 7.75e1
  variant carriers: 808
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 7.25e1
  variant carriers: 718
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 5.25e1
  variant carriers: 1993
genotype quality: GenotypeQuality
  all individuals: 3345
  bin: 3.25e1
  variant carriers: 2974
genotype quality: GenotypeQuality
  all individuals: 3011
  bin: 2.5e0
  variant carriers: 961
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 5.75e1
  variant carriers: 1059
genotype quality: GenotypeQuality
  all individuals: 2253
  bin: 6.75e1
  variant carriers: 1080
genotype quality: GenotypeQuality
  all individuals: 3002
  bin: 3.75e1
  variant carriers: 2699
genotype quality: GenotypeQuality
  all individuals: 3916
  bin: 2.25e1
  variant carriers: 3268
genotype quality: GenotypeQuality
  all individuals: 2270
  bin: 1.25e1
  variant carriers: 1830
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 8.75e1
  variant carriers: 518
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 8.25e1
  variant carriers: 669
genotype quality: GenotypeQuality
  all individuals: 12090
  bin: 9.75e1
  variant carriers: 8524
genotype quality: GenotypeQuality
  all individuals: 5278
  bin: 6.25e1
  variant carriers: 1446
genotype quality: GenotypeQuality
  all individuals: 2349
  bin: 2.75e1
  variant carriers: 1963
hgvs: p.Ile324Thr
num of homozygotes: 13834
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum

19-43716636-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43716636
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43716636
    reference: chr 19
allele count: 31374
allele frequency: 4.200224911641855e-1
allele num: 74696
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.965-9T>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2146-9T>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241104
  ensembl transcript: ENST00000489959
  gene symbol: CEACAMP10
  hgvsc: ENST00000489959.1:n.1037-9T>C
  variant of: http://identifiers.org/hgnc/1822
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 2.25e1
  variant carriers: 1548
genotype depth: GenotypeDepth
  all individuals: 7396
  bin: 1.25e1
  variant carriers: 6820
genotype depth: GenotypeDepth
  all individuals: 9579
  bin: 7.5e0
  variant carriers: 9165
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 5.25e1
  variant carriers: 1290
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 2.5e0
  variant carriers: 3455
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 1.75e1
  variant carriers: 3326
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 4.25e1
  variant carriers: 1819
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 3.75e1
  variant carriers: 1825
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.75e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 3372
  bin: 4.75e1
  variant carriers: 1605
genotype depth: GenotypeDepth
  all individuals: 4314
  bin: 3.25e1
  variant carriers: 1570
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.75e1
  variant carriers: 446
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.25e1
  variant carriers: 267
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 9.75e1
  variant carriers: 449
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 2.75e1
  variant carriers: 1400
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 6.25e1
  variant carriers: 627
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 5.75e1
  variant carriers: 941
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 8.25e1
  variant carriers: 179
genotype quality: GenotypeQuality
  all individuals: 2220
  bin: 4.75e1
  variant carriers: 1831
genotype quality: GenotypeQuality
  all individuals: 3663
  bin: 3.25e1
  variant carriers: 3082
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 5.75e1
  variant carriers: 853
genotype quality: GenotypeQuality
  all individuals: 3483
  bin: 7.5e0
  variant carriers: 2656
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 8.75e1
  variant carriers: 411
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 9.25e1
  variant carriers: 347
genotype quality: GenotypeQuality
  all individuals: 2695
  bin: 2.5e0
  variant carriers: 1018
genotype quality: GenotypeQuality
  all individuals: 3104
  bin: 1.25e1
  variant carriers: 2517
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 4.25e1
  variant carriers: 1390
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 5.25e1
  variant carriers: 1356
genotype quality: GenotypeQuality
  all individuals: 4798
  bin: 2.25e1
  variant carriers: 3881
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 7.75e1
  variant carriers: 567
genotype quality: GenotypeQuality
  all individuals: 4674
  bin: 1.75e1
  variant carriers: 4097
genotype quality: GenotypeQuality
  all individuals: 3045
  bin: 3.75e1
  variant carriers: 2557
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 6.75e1
  variant carriers: 720
genotype quality: GenotypeQuality
  all individuals: 2791
  bin: 2.75e1
  variant carriers: 2270
genotype quality: GenotypeQuality
  all individuals: 5038
  bin: 6.25e1
  variant carriers: 913
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 8.25e1
  variant carriers: 503
genotype quality: GenotypeQuality
  all individuals: 9333
  bin: 9.75e1
  variant carriers: 5638
num of homozygotes: 9962
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: A
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

19-43716642-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43716642
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43716642
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 75776
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241104
  ensembl transcript: ENST00000489959
  gene symbol: CEACAMP10
  hgvsc: ENST00000489959.1:n.1037-15A>G
  variant of: http://identifiers.org/hgnc/1822
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2146-15A>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.965-15A>G
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8770
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10475
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1426
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14588
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11691
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8659
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1932
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5062
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/19-43716665-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43716665
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43716665
    reference: chr 19
allele count: 6
allele frequency: 8.261049153242462e-5
allele num: 72630
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241104
  ensembl transcript: ENST00000489959
  gene symbol: CEACAMP10
  hgvsc: ENST00000489959.1:n.1037-38T>G
  variant of: http://identifiers.org/hgnc/1822
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.965-38T>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2146-38T>G
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10268
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9823
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7629
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9044
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2449
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1722
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11119
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1668
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3005
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1992
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5043
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

19-43716665-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43716665
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43716665
    reference: chr 19
allele count: 6
allele frequency: 8.261049153242462e-5
allele num: 72630
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.965-38T>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2146-38T>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241104
  ensembl transcript: ENST00000489959
  gene symbol: CEACAMP10
  hgvsc: ENST00000489959.1:n.1037-38T>C
  variant of: http://identifiers.org/hgnc/1822
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6460
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9823
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7629
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10268
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1992
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2449
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3005
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10004
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5043
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1668
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1722
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11119
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

19-43716666-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43716666
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43716666
    reference: chr 19
allele count: 6
allele frequency: 8.287521754744606e-5
allele num: 72398
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241104
  ensembl transcript: ENST00000489959
  gene symbol: CEACAMP10
  hgvsc: ENST00000489959.1:n.1037-39T>A
  variant of: http://identifiers.org/hgnc/1822
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.965-39T>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2146-39T>A
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9891
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7441
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5517
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2491
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2104
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1354
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5042
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1250
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8673
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2981
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1723
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9655
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

19-43716667-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43716667
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43716667
    reference: chr 19
allele count: 1
allele frequency: 1.388040641829993e-5
allele num: 72044
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.965-40C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2146-40C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241104
  ensembl transcript: ENST00000489959
  gene symbol: CEACAMP10
  hgvsc: ENST00000489959.1:n.1037-40C>T
  variant of: http://identifiers.org/hgnc/1822
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9971
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5751
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8332
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2203
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1675
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2487
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11076
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1440
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2947
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5041
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9175
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

19-43716668-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43716668
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43716668
    reference: chr 19
allele count: 3
allele frequency: 4.176644205602272e-5
allele num: 71828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.965-41A>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2146-41A>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241104
  ensembl transcript: ENST00000489959
  gene symbol: CEACAMP10
  hgvsc: ENST00000489959.1:n.1037-41A>T
  variant of: http://identifiers.org/hgnc/1822
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5728
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10098
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10186
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1701
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2514
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5040
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 8741
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2370
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8028
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11115
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2298
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2934
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

19-43716668-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43716668
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43716668
    reference: chr 19
allele count: 2
allele frequency: 2.784429470401515e-5
allele num: 71828
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.965-41A>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241104
  ensembl transcript: ENST00000489959
  gene symbol: CEACAMP10
  hgvsc: ENST00000489959.1:n.1037-41A>G
  variant of: http://identifiers.org/hgnc/1822
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2146-41A>G
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10098
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5728
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8028
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5040
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2934
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2514
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1701
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2370
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11115
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2298
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

19-43716673-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43716673
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43716673
    reference: chr 19
allele count: 2
allele frequency: 2.846569883290635e-5
allele num: 70260
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.965-46T>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2146-46T>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241104
  ensembl transcript: ENST00000489959
  gene symbol: CEACAMP10
  hgvsc: ENST00000489959.1:n.1037-46T>C
  variant of: http://identifiers.org/hgnc/1822
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5841
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10504
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5578
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10634
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2591
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6371
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2608
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2955
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1675
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2338
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2226
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6186
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2322
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5033
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

19-43716676-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43716676
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43716676
    reference: chr 19
allele count: 1
allele frequency: 1.473405039045234e-5
allele num: 67870
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.965-49A>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2146-49A>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241104
  ensembl transcript: ENST00000489959
  gene symbol: CEACAMP10
  hgvsc: ENST00000489959.1:n.1037-49A>G
  variant of: http://identifiers.org/hgnc/1822
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10657
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2642
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2593
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3222
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3993
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1501
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2308
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4314
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1601
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5033
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2903
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3775
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9004
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3177
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2863
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-43757714-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757714
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757714
    reference: chr 19
allele count: 407
allele frequency: 3.521431414282995e-3
allele num: 115578
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4640T>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.*47T>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.*47T>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.*47T>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.*47T>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4640T>G
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 6.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 3700
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 5.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 3.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 4080
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5354
  bin: 4.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 4295
  bin: 5.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 4.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 3979
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 7.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 3.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1918
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1831
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3737
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 1.75e1
  variant carriers: 1
num of homozygotes: 26
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

19-43757714-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757714
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757714
    reference: chr 19
allele count: 1
allele frequency: 8.652165637058956e-6
allele num: 115578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.*47T>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.*47T>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.*47T>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.*47T>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4640T>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4640T>A
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5354
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3700
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1771
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1918
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

19-43757719-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757719
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757719
    reference: chr 19
allele count: 69
allele frequency: 5.966999896226089e-4
allele num: 115636
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.*42C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.*42C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4635C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.*42C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4635C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.*42C>T
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4761
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5327
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4776
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5353
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3478
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38843
  bin: 9.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4583
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 6
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

19-43757720-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757720
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757720
    reference: chr 19
allele count: 2
allele frequency: 1.729296003596936e-5
allele num: 115654
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4634C>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.*41C>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.*41C>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.*41C>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.*41C>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4634C>G
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5333
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38837
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4495
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

19-43757720-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757720
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757720
    reference: chr 19
allele count: 3
allele frequency: 2.593944005395403e-5
allele num: 115654
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.*41C>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4634C>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.*41C>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.*41C>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4634C>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.*41C>A
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4518
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4042
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1794
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4495
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

19-43757722-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757722
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757722
    reference: chr 19
allele count: 13
allele frequency: 1.123750907644964e-4
allele num: 115684
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.*39T>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.*39T>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.*39T>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.*39T>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4632T>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4632T>C
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1791
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1820
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 2
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

19-43757726-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757726
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757726
    reference: chr 19
allele count: 3
allele frequency: 2.591344908007256e-5
allele num: 115770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.*35C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4628C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.*35C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4628C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.*35C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.*35C>T
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3478
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5567
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2019
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1802
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP

19-43757728-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757728
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757728
    reference: chr 19
allele count: 1
allele frequency: 8.637219506296534e-6
allele num: 115778
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4626G>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.*33G>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.*33G>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4626G>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.*33G>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.*33G>C
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4958
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3478
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

19-43757745-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757745
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757745
    reference: chr 19
allele count: 1
allele frequency: 8.598895901766214e-6
allele num: 116294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.*16C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.*16C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.*16C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4609C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4609C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.*16C>T
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3478
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7206
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

19-43757746-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757746
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757746
    reference: chr 19
allele count: 1
allele frequency: 8.595052687672975e-6
allele num: 116346
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.*15A>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.*15A>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4608A>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.*15A>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4608A>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.*15A>T
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6948
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38859
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7309
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

19-43757747-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757747
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757747
    reference: chr 19
allele count: 22
allele frequency: 1.889904473919318e-4
allele num: 116408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.*14G>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.*14G>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.*14G>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.*14G>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4607G>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4607G>C
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4733
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7048
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5362
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4748
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7527
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2132
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

19-43757750-AGT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757750
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757748
    reference: chr 19
allele count: 4
allele frequency: 3.431708991077557e-5
allele num: 116560
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.*9_*10delAC
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4602_2145+4603delAC
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.*9_*10delAC
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.*9_*10delAC
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4602_964+4603delAC
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.*9_*10delAC
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1891
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: AGT
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD

19-43757754-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757754
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757754
    reference: chr 19
allele count: 1301
allele frequency: 1.114270542489594e-2
allele num: 116758
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.*7C>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4600C>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.*7C>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4600C>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.*7C>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.*7C>A
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 8.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 4901
  bin: 3.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 2.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 4690
  bin: 3.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 6.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 9.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 8.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 7.25e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 4.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 5.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 4702
  bin: 5.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 5237
  bin: 4.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 6.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 7.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 9.75e1
  variant carriers: 315
genotype depth: GenotypeDepth
  all individuals: 4843
  bin: 2.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2143
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 8068
  bin: 6.25e1
  variant carriers: 5
num of homozygotes: 96
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-43757758-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757758
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757758
    reference: chr 19
allele count: 211
allele frequency: 1.805332146890722e-3
allele num: 116876
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.*3G>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4596G>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.*3G>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4596G>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.*3G>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.*3G>T
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4721
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5252
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 9.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 4898
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7599
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5249
  bin: 4.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8333
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1825
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2175
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 33
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

19-43757767-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757767
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757767
    reference: chr 19
allele count: 1
allele frequency: 8.537813978109045e-6
allele num: 117126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.996G>A
  hgvsp: ENST00000593948.1:c.996G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4587G>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.1275G>A
  hgvsp: ENST00000270077.3:c.1275G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.996G>A
  hgvsp: ENST00000443718.3:c.996G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.717G>A
  hgvsp: ENST00000291752.5:c.717G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4587G>A
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1896
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2215
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln425Gln
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

19-43757796-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757796
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757796
    reference: chr 19
allele count: 4
allele frequency: 3.408606731998295e-5
allele num: 117350
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.1246C>G
  hgvsp: ENSP00000270077.3:p.Pro416Ala
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4558C>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4558C>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.967C>G
  hgvsp: ENSP00000396753.2:p.Pro323Ala
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.967C>G
  hgvsp: ENSP00000471453.1:p.Pro323Ala
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.688C>G
  hgvsp: ENSP00000291752.4:p.Pro230Ala
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5250
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1825
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1858
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8516
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro416Ala
num of homozygotes: 1
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-43757797-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757797
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757797
    reference: chr 19
allele count: 1
allele frequency: 8.521371599972732e-6
allele num: 117352
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.1245T>G
  hgvsp: ENST00000270077.3:c.1245T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.687T>G
  hgvsp: ENST00000291752.5:c.687T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.966T>G
  hgvsp: ENST00000443718.3:c.966T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4557T>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.966T>G
  hgvsp: ENST00000593948.1:c.966T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4557T>G
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1245T>G
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

19-43757798-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757798
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757798
    reference: chr 19
allele count: 2
allele frequency: 1.704187187920721e-5
allele num: 117358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4556G>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.686G>A
  hgvsp: ENSP00000291752.4:p.Gly229Asp
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4556G>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.965G>A
  hgvsp: ENSP00000396753.2:p.Gly322Asp
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.1244G>A
  hgvsp: ENSP00000270077.3:p.Gly415Asp
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.965G>A
  hgvsp: ENSP00000471453.1:p.Gly322Asp
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4910
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39015
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1857
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly415Asp
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

19-43757799-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757799
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757799
    reference: chr 19
allele count: 1
allele frequency: 8.520790729379687e-6
allele num: 117360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.965-1G>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.1244-1G>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4555G>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4555G>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.965-1G>A
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.686-1G>A
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39015
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8605
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1244-1G>A
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

19-43757803-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757803
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757803
    reference: chr 19
allele count: 1
allele frequency: 8.521952549768203e-6
allele num: 117344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.686-5A>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.965-5A>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.1244-5A>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.965-5A>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4551A>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4551A>G
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8550
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
hgvs: c.1244-5A>G
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-43757806-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757806
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757806
    reference: chr 19
allele count: 24
allele frequency: 2.045582394354192e-4
allele num: 117326
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.965-8T>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4548T>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.965-8T>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.686-8T>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.1244-8T>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4548T>C
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5270
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5255
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4907
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4721
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39021
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1898
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8521
  bin: 6.25e1
  variant carriers: 0
hgvs: c.1244-8T>C
num of homozygotes: 8
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/19-43757808-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757808
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757808
    reference: chr 19
allele count: 1
allele frequency: 8.524567804412315e-6
allele num: 117308
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4546T>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.965-10T>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.686-10T>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.965-10T>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.1244-10T>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4546T>G
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4721
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

19-43757818-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757818
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757818
    reference: chr 19
allele count: 4
allele frequency: 3.41273633199099e-5
allele num: 117208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4536C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.965-20C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.965-20C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4536C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.1244-20C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.686-20C>T
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2175
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39018
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

19-43757818-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757818
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757818
    reference: chr 19
allele count: 1
allele frequency: 8.531840829977476e-6
allele num: 117208
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.965-20C>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.686-20C>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4536C>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4536C>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.1244-20C>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.965-20C>G
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7610
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39018
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2175
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-43757822-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757822
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757822
    reference: chr 19
allele count: 10
allele frequency: 8.535190590805893e-5
allele num: 117162
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.965-24T>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.1244-24T>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.686-24T>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4532T>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.965-24T>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4532T>G
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6235
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5256
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4284
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7175
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2129
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

19-43757825-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757825
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757825
    reference: chr 19
allele count: 1
allele frequency: 8.538251366120219e-6
allele num: 117120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4529C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.686-27C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.965-27C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.1244-27C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4529C>T
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.965-27C>T
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39017
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7040
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

19-43757836-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757836
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757836
    reference: chr 19
allele count: 1
allele frequency: 8.551978927923921e-6
allele num: 116932
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4518A>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4518A>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.1244-38A>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.965-38A>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.965-38A>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.686-38A>G
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1873
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39017
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1819
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

19-43757839-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757839
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757839
    reference: chr 19
allele count: 1
allele frequency: 8.563256777817739e-6
allele num: 116778
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.965-41G>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.1244-41G>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4515G>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.686-41G>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4515G>C
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.965-41G>C
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5324
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1872
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1819
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

19-43757840-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757840
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757840
    reference: chr 19
allele count: 1
allele frequency: 8.567218395531339e-6
allele num: 116724
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.1244-42A>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4514A>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4514A>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.686-42A>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.965-42A>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.965-42A>G
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1820
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4699
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2001
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/19-43757841-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43757841
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43757841
    reference: chr 19
allele count: 1
allele frequency: 8.568392912225382e-6
allele num: 116708
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl transcript: ENST00000595404
  gene symbol: PSG9
  hgvsc: ENST00000595404.1:n.2145+4513T>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000270077
  ensembl transcript: ENST00000270077
  gene symbol: PSG9
  hgvsc: ENST00000270077.3:c.1244-43T>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000400484
  ensembl transcript: ENST00000418820
  gene symbol: PSG9
  hgvsc: ENST00000418820.2:c.964+4513T>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000396753
  ensembl transcript: ENST00000443718
  gene symbol: PSG9
  hgvsc: ENST00000443718.3:c.965-43T>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000471453
  ensembl transcript: ENST00000593948
  gene symbol: PSG9
  hgvsc: ENST00000593948.1:c.965-43T>G
  variant of: http://identifiers.org/hgnc/9526
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183668
  ensembl protein: ENSP00000291752
  ensembl transcript: ENST00000291752
  gene symbol: PSG9
  hgvsc: ENST00000291752.5:c.686-43T>G
  variant of: http://identifiers.org/hgnc/9526
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2000
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4745
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1868
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A

GenotypeQuality
all individuals: 322
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6244
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40712
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1561
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2534
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1389
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.129141000888725e-5
allele num: 65262
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.179437169127891e-4
allele num: 7178
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9542
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.931761343336905e-5
allele num: 11196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.228e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.37e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.746e0

MQ
type: SiteQuality
SIO_000300: 4.342e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.89e-1

FS
type: SiteQuality
SIO_000300: 7.545e0

QD
type: SiteQuality
SIO_000300: 1.23e1

DP
type: SiteQuality
SIO_000300: 3.505724e6

GenotypeQuality
all individuals: 132
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40712
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 322
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1561
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1389
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6244
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.378364587319811e-5
allele num: 15678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.342e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.37e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-3

DP
type: SiteQuality
SIO_000300: 3.505724e6

MQRankSum
type: SiteQuality
SIO_000300: -3.228e0

QD
type: SiteQuality
SIO_000300: 1.23e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.746e0

FS
type: SiteQuality
SIO_000300: 7.545e0

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

GenotypeQuality
all individuals: 40712
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6244
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2534
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1389
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1561
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.064570500444363e-5
allele num: 65262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7178
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.37e-2

FS
type: SiteQuality
SIO_000300: 7.545e0

MQ
type: SiteQuality
SIO_000300: 4.342e1

QD
type: SiteQuality
SIO_000300: 1.23e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.746e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.228e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-3

DP
type: SiteQuality
SIO_000300: 3.505724e6

GenotypeQuality
all individuals: 167
bin: 2.5e0
variant carriers: 5

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 23

GenotypeQuality
all individuals: 6225
bin: 6.25e1
variant carriers: 20

GenotypeQuality
all individuals: 2483
bin: 6.75e1
variant carriers: 27

GenotypeQuality
all individuals: 1582
bin: 7.75e1
variant carriers: 23

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 19

GenotypeQuality
all individuals: 127
bin: 4.75e1
variant carriers: 26

GenotypeQuality
all individuals: 810
bin: 8.75e1
variant carriers: 23

GenotypeQuality
all individuals: 1392
bin: 2.25e1
variant carriers: 26

GenotypeQuality
all individuals: 345
bin: 3.25e1
variant carriers: 24

GenotypeQuality
all individuals: 234
bin: 3.75e1
variant carriers: 17

GenotypeQuality
all individuals: 102
bin: 1.75e1
variant carriers: 25

GenotypeQuality
all individuals: 1483
bin: 9.25e1
variant carriers: 15

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 20

GenotypeQuality
all individuals: 323
bin: 2.75e1
variant carriers: 17

GenotypeQuality
all individuals: 1543
bin: 8.25e1
variant carriers: 23

GenotypeQuality
all individuals: 40880
bin: 9.75e1
variant carriers: 2600

Other
type: Population
allele count: 22
allele frequency: 2.517162471395881e-2
allele num: 874
num of homozygotes: 2

South Asian
type: Population
allele count: 424
allele frequency: 2.714816237674478e-2
allele num: 15618
num of homozygotes: 28

African
type: Population
allele count: 69
allele frequency: 7.258573532505786e-3
allele num: 9506
num of homozygotes: 10

East Asian
type: Population
allele count: 22
allele frequency: 3.067484662576687e-3
allele num: 7172
num of homozygotes: 5

Latino
type: Population
allele count: 130
allele frequency: 1.162374821173104e-2
allele num: 11184
num of homozygotes: 14

European (Non-Finnish)
type: Population
allele count: 2251
allele frequency: 3.453725297655579e-2
allele num: 65176
num of homozygotes: 157

European (Finnish)
type: Population
allele count: 202
allele frequency: 3.083969465648855e-2
allele num: 6550
num of homozygotes: 15

DP
type: SiteQuality
SIO_000300: 3.504449e6

MQRankSum
type: SiteQuality
SIO_000300: -4.425e0

QD
type: SiteQuality
SIO_000300: 7.61e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.03e0

MQ
type: SiteQuality
SIO_000300: 4.269e1

FS
type: SiteQuality
SIO_000300: 2.5332e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.504e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.18e-1

GenotypeQuality
all individuals: 1033
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2543
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1529
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1561
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 40487
bin: 9.75e1
variant carriers: 26

GenotypeQuality
all individuals: 103
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6396
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.923076923076923e-4
allele num: 15600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.226504768037286e-4
allele num: 65226
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 7.144132880871584e-4
allele num: 11198
num of homozygotes: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9546
num of homozygotes: 0

East Asian
type: Population
allele count: 15
allele frequency: 2.089718584563945e-3
allele num: 7178
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.619999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.57e0

VQSLOD
type: SiteQuality
SIO_000300: -3.245e-1

FS
type: SiteQuality
SIO_000300: 1.357e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.861e0

DP
type: SiteQuality
SIO_000300: 3.450703e6

QD
type: SiteQuality
SIO_000300: 1.478e1

MQ
type: SiteQuality
SIO_000300: 4.487e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e0

GenotypeQuality
all individuals: 1562
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1530
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1599
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40487
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.065791894046232e-5
allele num: 65236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.094e0

QD
type: SiteQuality
SIO_000300: 1.037e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.53e-1

DP
type: SiteQuality
SIO_000300: 3.450299e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -8.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQ
type: SiteQuality
SIO_000300: 5.002e1

FS
type: SiteQuality
SIO_000300: 8.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

GenotypeQuality
all individuals: 1017
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 71
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 87
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 126
bin: 4.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1554
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1556
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 545
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1531
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2434
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 40534
bin: 9.75e1
variant carriers: 408

GenotypeQuality
all individuals: 438
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6239
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1587
bin: 7.75e1
variant carriers: 4

African
type: Population
allele count: 494
allele frequency: 5.168445281439632e-2
allele num: 9558
num of homozygotes: 103

Latino
type: Population
allele count: 37
allele frequency: 3.304751697034655e-3
allele num: 11196
num of homozygotes: 6

Other
type: Population
allele count: 3
allele frequency: 3.432494279176201e-3
allele num: 874
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 27
allele frequency: 4.14097727063587e-4
allele num: 65202
num of homozygotes: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.548e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.832e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.08e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.94e-1

FS
type: SiteQuality
SIO_000300: 6.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.767e1

DP
type: SiteQuality
SIO_000300: 3.446755e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e0

MQ
type: SiteQuality
SIO_000300: 4.859e1

GenotypeQuality
all individuals: 421
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1539
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2390
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40424
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 95
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1575
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1004
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534401276621862e-5
allele num: 65172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7170
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.96e0

MQRankSum
type: SiteQuality
SIO_000300: 6.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.61e0

QD
type: SiteQuality
SIO_000300: 4.55e0

DP
type: SiteQuality
SIO_000300: 3.429562e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.635e0

MQ
type: SiteQuality
SIO_000300: 5.144e1

VQSLOD
type: SiteQuality
SIO_000300: -2.762e0

GenotypeQuality
all individuals: 452
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5958
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1630
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2357
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11190
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.458279514337381e-5
allele num: 15484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.501e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.645e0

MQ
type: SiteQuality
SIO_000300: 5.038e1

VQSLOD
type: SiteQuality
SIO_000300: -1.218e0

QD
type: SiteQuality
SIO_000300: 1.611e1

MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

DP
type: SiteQuality
SIO_000300: 3.427658e6

GenotypeQuality
all individuals: 122
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1631
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40420
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 193
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1565
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7168
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11192
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.471654154801968e-5
allele num: 15452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65146
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.64e-1

QD
type: SiteQuality
SIO_000300: 1.579e1

DP
type: SiteQuality
SIO_000300: 3.422859e6

MQRankSum
type: SiteQuality
SIO_000300: -1.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 2.927e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.31e-1

MQ
type: SiteQuality
SIO_000300: 4.677e1

VQSLOD
type: SiteQuality
SIO_000300: -2.021e0

GenotypeQuality
all individuals: 1642
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1539
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1560
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40419
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 227
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535815210713847e-5
allele num: 65112
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11190
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.419607e6

VQSLOD
type: SiteQuality
SIO_000300: -2.631e0

MQRankSum
type: SiteQuality
SIO_000300: -3.14e-1

FS
type: SiteQuality
SIO_000300: 2.216e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.97e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.264e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.11e0

MQ
type: SiteQuality
SIO_000300: 4.718e1

GenotypeQuality
all individuals: 1598
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1554
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.496037417175523e-5
allele num: 15394
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9560
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65074
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.589e0

DP
type: SiteQuality
SIO_000300: 3.41545e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.31e-1

MQ
type: SiteQuality
SIO_000300: 5.116e1

FS
type: SiteQuality
SIO_000300: 3.421e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: 3.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.287e0

QD
type: SiteQuality
SIO_000300: 1.583e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 25

GenotypeQuality
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GenotypeQuality
all individuals: 5061
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.458437048646323e-4
allele num: 65082
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7170
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.895092183848351e-4
allele num: 15404
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.468275245755138e-4
allele num: 11190
num of homozygotes: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9560
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.152073732718894e-3
allele num: 868
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.706e1

DP
type: SiteQuality
SIO_000300: 3.415202e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.45e-1

FS
type: SiteQuality
SIO_000300: 1.639e0

QD
type: SiteQuality
SIO_000300: 1.668e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.99e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.369e0

VQSLOD
type: SiteQuality
SIO_000300: -8.731e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.16e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 22

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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variant carriers: 4815

GenotypeQuality
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bin: 4.75e1
variant carriers: 48

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 24

GenotypeQuality
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variant carriers: 40

GenotypeQuality
all individuals: 128
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GenotypeQuality
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bin: 6.75e1
variant carriers: 42

East Asian
type: Population
allele count: 15
allele frequency: 2.093217973765001e-3
allele num: 7166
num of homozygotes: 4

Latino
type: Population
allele count: 350
allele frequency: 3.135638774413187e-2
allele num: 11162
num of homozygotes: 53

European (Finnish)
type: Population
allele count: 488
allele frequency: 7.450381679389313e-2
allele num: 6550
num of homozygotes: 50

African
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allele count: 218
allele frequency: 2.281289242360821e-2
allele num: 9556
num of homozygotes: 37

European (Non-Finnish)
type: Population
allele count: 4207
allele frequency: 6.479285384259972e-2
allele num: 64930
num of homozygotes: 368

South Asian
type: Population
allele count: 535
allele frequency: 3.486250488726704e-2
allele num: 15346
num of homozygotes: 41

Other
type: Population
allele count: 47
allele frequency: 5.414746543778802e-2
allele num: 868
num of homozygotes: 5

MQRankSum
type: SiteQuality
SIO_000300: -4.092e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 3.412413e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.43e0

QD
type: SiteQuality
SIO_000300: 1.198e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.667e-1

FS
type: SiteQuality
SIO_000300: 1.747e0

MQ
type: SiteQuality
SIO_000300: 4.483e1

GenotypeQuality
all individuals: 1606
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 541
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GenotypeQuality
all individuals: 406
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64950
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.568575932737782e-5
allele num: 15224
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.544e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.19e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.101e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.57e-1

MQ
type: SiteQuality
SIO_000300: 4.884e1

DP
type: SiteQuality
SIO_000300: 3.335066e6

GenotypeQuality
all individuals: 199
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 785
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GenotypeQuality
all individuals: 1605
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GenotypeQuality
all individuals: 40011
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 137
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GenotypeQuality
all individuals: 574
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GenotypeQuality
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GenotypeQuality
all individuals: 144
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GenotypeQuality
all individuals: 3783
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GenotypeQuality
all individuals: 537
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64946
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.150627615062762e-3
allele num: 9560
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15222
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QD
type: SiteQuality
SIO_000300: 2.036e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.68e-2

FS
type: SiteQuality
SIO_000300: 8.303000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -1.528e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.0e-3

DP
type: SiteQuality
SIO_000300: 3.334917e6

MQ
type: SiteQuality
SIO_000300: 5.447e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

GenotypeQuality
all individuals: 138
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variant carriers: 0

GenotypeQuality
all individuals: 1639
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GenotypeQuality
all individuals: 558
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 40009
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 831
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variant carriers: 0

GenotypeQuality
all individuals: 1607
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.080240258740182e-5
allele num: 64930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11184
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15218
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.764e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.269e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.63e0

DP
type: SiteQuality
SIO_000300: 3.333878e6

VQSLOD
type: SiteQuality
SIO_000300: -2.414e0

QD
type: SiteQuality
SIO_000300: 1.402e1

MQ
type: SiteQuality
SIO_000300: 4.861e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1640
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GenotypeQuality
all individuals: 1602
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541592156379108e-5
allele num: 64868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
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DP
type: SiteQuality
SIO_000300: 3.330314e6

VQSLOD
type: SiteQuality
SIO_000300: -1.619e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.826e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.136e0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.53e-1

GenotypeQuality
all individuals: 1774
bin: 8.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6208
num of homozygotes: 0

East Asian
type: Population
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South Asian
type: Population
allele count: 1
allele frequency: 6.809206046574969e-5
allele num: 14686
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9900
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58750
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.39e-1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.993142e6

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.42e-1

GenotypeQuality
all individuals: 512
bin: 1.75e1
variant carriers: 0

Latino
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6202
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 58634
num of homozygotes: 0

East Asian
type: Population
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Other
type: Population
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South Asian
type: Population
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allele frequency: 2.047502047502048e-4
allele num: 14652
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African
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allele count: 1
allele frequency: 1.494321578003586e-4
allele num: 6692
num of homozygotes: 0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.2417e1

MQ
type: SiteQuality
SIO_000300: 3.188e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

DP
type: SiteQuality
SIO_000300: 1.989708e6

GenotypeQuality
all individuals: 144
bin: 5.75e1
variant carriers: 0

African
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allele count: 28
allele frequency: 4.184100418410041e-3
allele num: 6692
num of homozygotes: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6202
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South Asian
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European (Non-Finnish)
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allele count: 1
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allele num: 58634
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Other
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Latino
type: Population
allele count: 1
allele frequency: 1.01276078590237e-4
allele num: 9874
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East Asian
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.52e-2

FS
type: SiteQuality
SIO_000300: 2.2417e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
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allele count: 1
allele frequency: 1.502403846153846e-4
allele num: 6656
num of homozygotes: 0

South Asian
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6186
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European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.026553517656721e-4
allele num: 58448
num of homozygotes: 1

MQRankSum
type: SiteQuality
SIO_000300: -7.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
type: SiteQuality
SIO_000300: 3.562e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 7.7604e1

QD
type: SiteQuality
SIO_000300: 5.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.984213e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.458e0

VQSLOD
type: SiteQuality
SIO_000300: -3.141e1

GenotypeQuality
all individuals: 365
bin: 4.75e1
variant carriers: 97

European (Finnish)
type: Population
allele count: 624
allele frequency: 1.029363246453316e-1
allele num: 6062
num of homozygotes: 43

African
type: Population
allele count: 101
allele frequency: 1.516516516516517e-2
allele num: 6660
num of homozygotes: 14

Other
type: Population
allele count: 60
allele frequency: 7.83289817232376e-2
allele num: 766
num of homozygotes: 5

Latino
type: Population
allele count: 129
allele frequency: 1.315521109524781e-2
allele num: 9806
num of homozygotes: 9

East Asian
type: Population
allele count: 5
allele frequency: 1.060670343657191e-3
allele num: 4714
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 3944
allele frequency: 6.812215006218046e-2
allele num: 57896
num of homozygotes: 264

South Asian
type: Population
allele count: 817
allele frequency: 5.601261483614425e-2
allele num: 14586
num of homozygotes: 60

DP
type: SiteQuality
SIO_000300: 1.986631e6

QD
type: SiteQuality
SIO_000300: 7.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.388e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.113e0

MQRankSum
type: SiteQuality
SIO_000300: -9.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-2

FS
type: SiteQuality
SIO_000300: 3.3555e1

MQ
type: SiteQuality
SIO_000300: 3.554e1

GenotypeQuality
all individuals: 1680
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.736774462468304e-5
allele num: 57578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6088
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4682
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

QD
type: SiteQuality
SIO_000300: 1.521e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

MQ
type: SiteQuality
SIO_000300: 4.815e1

VQSLOD
type: SiteQuality
SIO_000300: -1.8e1

FS
type: SiteQuality
SIO_000300: 4.0231e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.66e-1

DP
type: SiteQuality
SIO_000300: 1.92391e6

MQRankSum
type: SiteQuality
SIO_000300: 8.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.43e-1

GenotypeQuality
all individuals: 2606
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.037297677691766e-5
allele num: 14210
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.888511e6

MQRankSum
type: SiteQuality
SIO_000300: 2.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.374e1

VQSLOD
type: SiteQuality
SIO_000300: -1.903e0

FS
type: SiteQuality
SIO_000300: 3.162e0

MQ
type: SiteQuality
SIO_000300: 5.052e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.388e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.748e0

GenotypeQuality
all individuals: 2042
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4318
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.052186177715091e-5
allele num: 14180
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56622
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

MQ
type: SiteQuality
SIO_000300: 4.607e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.141e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.087e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.23e0

DP
type: SiteQuality
SIO_000300: 1.884585e6

GenotypeQuality
all individuals: 18504
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9618
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56418
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.079144839303412e-5
allele num: 14126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6016
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.171e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.86e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.128e0

QD
type: SiteQuality
SIO_000300: 1.375e1

FS
type: SiteQuality
SIO_000300: 7.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.95e-1

DP
type: SiteQuality
SIO_000300: 1.874869e6

GenotypeQuality
all individuals: 1635
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.778030653248462e-5
allele num: 56242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14088
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.06e0

FS
type: SiteQuality
SIO_000300: 9.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.97e0

MQ
type: SiteQuality
SIO_000300: 4.908e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.870421e6

QD
type: SiteQuality
SIO_000300: 4.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.323e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.71e0

GenotypeQuality
all individuals: 2193
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13842
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.057753331922996e-4
allele num: 9454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.530364372469636e-4
allele num: 55328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

QD
type: SiteQuality
SIO_000300: 5.43e0

FS
type: SiteQuality
SIO_000300: 1.9683e1

VQSLOD
type: SiteQuality
SIO_000300: -6.353e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.17e-1

MQ
type: SiteQuality
SIO_000300: 3.171e1

DP
type: SiteQuality
SIO_000300: 1.845961e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.718e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.09e0

GenotypeQuality
all individuals: 180
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54200
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.932981375568265e-4
allele num: 13638
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5952
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.179e1

VQSLOD
type: SiteQuality
SIO_000300: -5.514e0

MQ
type: SiteQuality
SIO_000300: 4.982e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

FS
type: SiteQuality
SIO_000300: 2.802e1

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

DP
type: SiteQuality
SIO_000300: 1.835237e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.14e-1

GenotypeQuality
all individuals: 193
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5922
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13642
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.714440825190011e-4
allele num: 3684
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.26e0

FS
type: SiteQuality
SIO_000300: 1.8583e1

QD
type: SiteQuality
SIO_000300: 1.747e1

VQSLOD
type: SiteQuality
SIO_000300: -4.279e0

DP
type: SiteQuality
SIO_000300: 1.8346e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

MQRankSum
type: SiteQuality
SIO_000300: -4.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

MQ
type: SiteQuality
SIO_000300: 4.38e1

GenotypeQuality
all individuals: 903
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5944
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.311010381634741e-5
allele num: 13678
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.789e0

DP
type: SiteQuality
SIO_000300: 1.834929e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e0

QD
type: SiteQuality
SIO_000300: 3.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.2e-2

FS
type: SiteQuality
SIO_000300: 4.289e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e0

VQSLOD
type: SiteQuality
SIO_000300: -2.134e0

MQ
type: SiteQuality
SIO_000300: 5.039e1

GenotypeQuality
all individuals: 1103
bin: 9.25e1
variant carriers: 539

African
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allele count: 3334
allele frequency: 6.048621190130624e-1
allele num: 5512
num of homozygotes: 1315

East Asian
type: Population
allele count: 2878
allele frequency: 7.889254385964912e-1
allele num: 3648
num of homozygotes: 1332

European (Non-Finnish)
type: Population
allele count: 21982
allele frequency: 4.625257753650633e-1
allele num: 47526
num of homozygotes: 6750

Other
type: Population
allele count: 345
allele frequency: 5.373831775700935e-1
allele num: 642
num of homozygotes: 117

Latino
type: Population
allele count: 2507
allele frequency: 3.16700353713997e-1
allele num: 7916
num of homozygotes: 653

South Asian
type: Population
allele count: 8009
allele frequency: 6.06466757534454e-1
allele num: 13206
num of homozygotes: 2778

European (Finnish)
type: Population
allele count: 2802
allele frequency: 5.312855517633674e-1
allele num: 5274
num of homozygotes: 889

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.93e-1

QD
type: SiteQuality
SIO_000300: 1.084e1

FS
type: SiteQuality
SIO_000300: 2.8489e1

MQ
type: SiteQuality
SIO_000300: 3.093e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e0

DP
type: SiteQuality
SIO_000300: 1.876655e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.689e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.899e1

MQRankSum
type: SiteQuality
SIO_000300: -3.137e0

GenotypeQuality
all individuals: 1085
bin: 7.25e1
variant carriers: 521

African
type: Population
allele count: 2406
allele frequency: 5.169746454662656e-1
allele num: 4654
num of homozygotes: 920

European (Finnish)
type: Population
allele count: 2194
allele frequency: 4.597652975691534e-1
allele num: 4772
num of homozygotes: 666

Other
type: Population
allele count: 266
allele frequency: 4.523809523809524e-1
allele num: 588
num of homozygotes: 86

European (Non-Finnish)
type: Population
allele count: 16288
allele frequency: 3.804718523709414e-1
allele num: 42810
num of homozygotes: 4803

South Asian
type: Population
allele count: 6582
allele frequency: 5.580803798541631e-1
allele num: 11794
num of homozygotes: 2184

East Asian
type: Population
allele count: 1982
allele frequency: 7.139769452449568e-1
allele num: 2776
num of homozygotes: 909

Latino
type: Population
allele count: 1656
allele frequency: 2.267871815940838e-1
allele num: 7302
num of homozygotes: 394

QD
type: SiteQuality
SIO_000300: 1.075e1

MQ
type: SiteQuality
SIO_000300: 3.191e1

VQSLOD
type: SiteQuality
SIO_000300: 5.785e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 1.9142e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.284e-1

DP
type: SiteQuality
SIO_000300: 1.629457e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.96e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.245e0

GenotypeQuality
all individuals: 3992
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2082
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4910
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4430
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.567e0

MQ
type: SiteQuality
SIO_000300: 5.152e1

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.424e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.477e0

QD
type: SiteQuality
SIO_000300: 7.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.61e-2

DP
type: SiteQuality
SIO_000300: 1.221557e6

GenotypeQuality
all individuals: 10004
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1798
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 7.82472613458529e-4
allele num: 7668
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10502
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.22e-2

FS
type: SiteQuality
SIO_000300: 1.509e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

DP
type: SiteQuality
SIO_000300: 1.128937e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.745e0

QD
type: SiteQuality
SIO_000300: 1.342e1

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-1

MQ
type: SiteQuality
SIO_000300: 4.224e1

GenotypeQuality
all individuals: 9044
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 5.561735261401557e-4
allele num: 1798
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 7.062146892655367e-4
allele num: 4248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43170
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.754385964912281e-3
allele num: 570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4674
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.521995810321844e-5
allele num: 10502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7668
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.745e0

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e-1

MQ
type: SiteQuality
SIO_000300: 4.224e1

FS
type: SiteQuality
SIO_000300: 1.509e0

QD
type: SiteQuality
SIO_000300: 1.342e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.22e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

DP
type: SiteQuality
SIO_000300: 1.128937e6

GenotypeQuality
all individuals: 829
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1778
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 7.836990595611285e-4
allele num: 7656
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4656
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.939e-1

MQ
type: SiteQuality
SIO_000300: 5.658e1

QD
type: SiteQuality
SIO_000300: 2.128e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.91e-2

DP
type: SiteQuality
SIO_000300: 1.125011e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.59e-1

FS
type: SiteQuality
SIO_000300: 1.425e0

MQRankSum
type: SiteQuality
SIO_000300: 9.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.558e0

GenotypeQuality
all individuals: 2239
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.332633543270352e-5
allele num: 42870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4626
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.15e-1

MQ
type: SiteQuality
SIO_000300: 5.158e1

MQRankSum
type: SiteQuality
SIO_000300: 2.95e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.783e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.189e0

VQSLOD
type: SiteQuality
SIO_000300: -1.953e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.98e-2

DP
type: SiteQuality
SIO_000300: 1.120482e6

QD
type: SiteQuality
SIO_000300: 1.476e1

GenotypeQuality
all individuals: 594
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7628
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 4.775549188156638e-4
allele num: 4188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4602
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.76056338028169e-3
allele num: 568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.219e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.39e-2

DP
type: SiteQuality
SIO_000300: 1.116656e6

FS
type: SiteQuality
SIO_000300: 1.379e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

QD
type: SiteQuality
SIO_000300: 6.85e0

VQSLOD
type: SiteQuality
SIO_000300: -3.49e0

GenotypeQuality
all individuals: 8741
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7628
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 5.747126436781609e-4
allele num: 1740
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.708737864077671e-5
allele num: 10300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.49e0

MQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.39e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e-1

FS
type: SiteQuality
SIO_000300: 1.379e0

DP
type: SiteQuality
SIO_000300: 1.116656e6

MQ
type: SiteQuality
SIO_000300: 3.219e1

QD
type: SiteQuality
SIO_000300: 6.85e0

GenotypeQuality
all individuals: 2675
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.38004569687738e-5
allele num: 42016
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7512
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.001201441730076e-4
allele num: 9988
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.142e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.06e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e0

VQSLOD
type: SiteQuality
SIO_000300: -2.006e0

MQRankSum
type: SiteQuality
SIO_000300: -2.575e0

MQ
type: SiteQuality
SIO_000300: 5.243e1

DP
type: SiteQuality
SIO_000300: 1.101206e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.427e0

FS
type: SiteQuality
SIO_000300: 1.111e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.18e-1

GenotypeQuality
all individuals: 1342
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3918
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.452422993917991e-5
allele num: 40776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9506
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-2

FS
type: SiteQuality
SIO_000300: 8.621e0

VQSLOD
type: SiteQuality
SIO_000300: -1.056e0

DP
type: SiteQuality
SIO_000300: 1.094789e6

MQRankSum
type: SiteQuality
SIO_000300: 8.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

MQ
type: SiteQuality
SIO_000300: 5.74e1

QD
type: SiteQuality
SIO_000300: 2.048e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.86e-1

GenotypeQuality
all individuals: 1117
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 130
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1330
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1169
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1771
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 583
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38867
bin: 9.75e1
variant carriers: 363

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7320
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.997900629811057e-5
allele num: 14290
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.162790697674419e-3
allele num: 860
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.7822135091784e-4
allele num: 11222
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 345
allele frequency: 5.26251563501022e-3
allele num: 65558
num of homozygotes: 22

European (Finnish)
type: Population
allele count: 55
allele frequency: 8.36374695863747e-3
allele num: 6576
num of homozygotes: 3

African
type: Population
allele count: 3
allele frequency: 3.076292042657916e-4
allele num: 9752
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.002e-1

MQ
type: SiteQuality
SIO_000300: 5.777e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.27e-1

DP
type: SiteQuality
SIO_000300: 2.922136e6

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.587e1

GenotypeQuality
all individuals: 318
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1330
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1831
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38867
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1169
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1772
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3737
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5253668507276e-5
allele num: 65558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9752
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11222
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.587e1

MQRankSum
type: SiteQuality
SIO_000300: 8.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.002e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.27e-1

DP
type: SiteQuality
SIO_000300: 2.922136e6

MQ
type: SiteQuality
SIO_000300: 5.777e1

GenotypeQuality
all individuals: 350
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1158
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1015
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1420
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1798
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1839
bin: 9.25e1
variant carriers: 1

Latino
type: Population
allele count: 8
allele frequency: 7.126313914127917e-4
allele num: 11226
num of homozygotes: 0

African
type: Population
allele count: 60
allele frequency: 6.150061500615006e-3
allele num: 9756
num of homozygotes: 6

South Asian
type: Population
allele count: 1
allele frequency: 6.98421567257997e-5
allele num: 14318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7326
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.575e0

MQ
type: SiteQuality
SIO_000300: 5.796e1

DP
type: SiteQuality
SIO_000300: 2.928415e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.749999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.495e1

GenotypeQuality
all individuals: 1387
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1142
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1004
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1161
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1794
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.04989630352568e-5
allele num: 65576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14338
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.962e0

MQ
type: SiteQuality
SIO_000300: 5.808e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.34e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.535e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.61e-1

DP
type: SiteQuality
SIO_000300: 2.928928e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-1

QD
type: SiteQuality
SIO_000300: 1.381e1

GenotypeQuality
all individuals: 108
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1161
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1004
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38837
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.092342028176873e-4
allele num: 14338
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7318
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65576
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.61e-1

MQ
type: SiteQuality
SIO_000300: 5.808e1

FS
type: SiteQuality
SIO_000300: 2.962e0

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-1

QD
type: SiteQuality
SIO_000300: 1.381e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.535e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

DP
type: SiteQuality
SIO_000300: 2.928928e6

GenotypeQuality
all individuals: 1445
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38840
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1039
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4967
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.574425909548352e-5
allele num: 65582
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 10
allele frequency: 1.520681265206813e-3
allele num: 6576
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11232
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.77e0

DP
type: SiteQuality
SIO_000300: 2.931545e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.28e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.35e-1

MQ
type: SiteQuality
SIO_000300: 5.851e1

MQRankSum
type: SiteQuality
SIO_000300: 3.81e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-1

QD
type: SiteQuality
SIO_000300: 1.63e1

VQSLOD
type: SiteQuality
SIO_000300: -3.817e-1

GenotypeQuality
all individuals: 1859
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38848
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 93
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5443
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 132
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.084781097984712e-4
allele num: 14390
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.301e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: -3.971e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.54e-2

QD
type: SiteQuality
SIO_000300: 1.722e1

FS
type: SiteQuality
SIO_000300: 9.503e0

VQSLOD
type: SiteQuality
SIO_000300: -1.746e0

MQ
type: SiteQuality
SIO_000300: 5.458e1

DP
type: SiteQuality
SIO_000300: 2.936839e6

GenotypeQuality
all individuals: 1815
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1858
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38850
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 547
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1844
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5681
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.94637399277577e-5
allele num: 14396
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.033e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e-1

MQ
type: SiteQuality
SIO_000300: 5.885e1

FS
type: SiteQuality
SIO_000300: 1.5657e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.717e0

QD
type: SiteQuality
SIO_000300: 1.286e1

DP
type: SiteQuality
SIO_000300: 2.939427e6

GenotypeQuality
all individuals: 321
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38858
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2121
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1161
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1848
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521653123953863e-5
allele num: 65718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9816
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.964e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.203e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.986e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.331e0

QD
type: SiteQuality
SIO_000300: 1.28e1

FS
type: SiteQuality
SIO_000300: 5.649e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.881e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e0

DP
type: SiteQuality
SIO_000300: 2.959046e6

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2127
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1849
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1868
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52114390021296e-5
allele num: 65740
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

FS
type: SiteQuality
SIO_000300: 4.024e0

QD
type: SiteQuality
SIO_000300: 1.535e1

MQRankSum
type: SiteQuality
SIO_000300: -6.15e-1

DP
type: SiteQuality
SIO_000300: 2.960243e6

MQ
type: SiteQuality
SIO_000300: 5.935e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.78e-1

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 464
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38869
bin: 9.75e1
variant carriers: 21

GenotypeQuality
all individuals: 128
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1160
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.52077376969402e-4
allele num: 65756
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 8.12787862367922e-4
allele num: 14764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

VQSLOD
type: SiteQuality
SIO_000300: -7.01e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.45e-2

FS
type: SiteQuality
SIO_000300: 1.507e0

QD
type: SiteQuality
SIO_000300: 1.618e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

DP
type: SiteQuality
SIO_000300: 2.962538e6

MQ
type: SiteQuality
SIO_000300: 5.925e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

GenotypeQuality
all individuals: 2162
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38861
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 7803
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.141552511415525e-3
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65798
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.065040650406504e-4
allele num: 7380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

MQRankSum
type: SiteQuality
SIO_000300: 8.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 2.897e0

DP
type: SiteQuality
SIO_000300: 2.966744e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.47e-2

QD
type: SiteQuality
SIO_000300: 2.019e1

GenotypeQuality
all individuals: 1184
bin: 2.25e1
variant carriers: 5

GenotypeQuality
all individuals: 39201
bin: 9.75e1
variant carriers: 1156

GenotypeQuality
all individuals: 1861
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1217
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 155
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 4

South Asian
type: Population
allele count: 196
allele frequency: 1.308411214953271e-2
allele num: 14980
num of homozygotes: 15

European (Finnish)
type: Population
allele count: 32
allele frequency: 4.863221884498481e-3
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1005
allele frequency: 1.526381337140427e-2
allele num: 65842
num of homozygotes: 71

Other
type: Population
allele count: 7
allele frequency: 7.972665148063782e-3
allele num: 878
num of homozygotes: 1

Latino
type: Population
allele count: 32
allele frequency: 2.842928216062544e-3
allele num: 11256
num of homozygotes: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7380
num of homozygotes: 0

African
type: Population
allele count: 29
allele frequency: 2.946555578134526e-3
allele num: 9842
num of homozygotes: 6

QD
type: SiteQuality
SIO_000300: 1.334e1

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQ
type: SiteQuality
SIO_000300: 5.904e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.28e-1

FS
type: SiteQuality
SIO_000300: 1.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.82e-1

DP
type: SiteQuality
SIO_000300: 3.010636e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.311e0

GenotypeQuality
all individuals: 1146
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 131
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39045
bin: 9.75e1
variant carriers: 164

GenotypeQuality
all individuals: 1851
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1223
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1881
bin: 7.75e1
variant carriers: 1

Other
type: Population
allele count: 2
allele frequency: 2.272727272727273e-3
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.643635397289396e-5
allele num: 15052
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7386
num of homozygotes: 0

African
type: Population
allele count: 199
allele frequency: 2.021946758788864e-2
allele num: 9842
num of homozygotes: 32

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.992895204262878e-4
allele num: 11260
num of homozygotes: 1

MQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

MQ
type: SiteQuality
SIO_000300: 5.892e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.253e0

DP
type: SiteQuality
SIO_000300: 3.004402e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.231e-1

FS
type: SiteQuality
SIO_000300: 1.22e0

VQSLOD
type: SiteQuality
SIO_000300: 8.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-1

QD
type: SiteQuality
SIO_000300: 1.476e1

GenotypeQuality
all individuals: 1145
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1825
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8491
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1857
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39015
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65920
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11260
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.013581998783702e-4
allele num: 9866
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.71e0

MQRankSum
type: SiteQuality
SIO_000300: -4.56e-1

DP
type: SiteQuality
SIO_000300: 3.004915e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.604e0

MQ
type: SiteQuality
SIO_000300: 5.797e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.528e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

QD
type: SiteQuality
SIO_000300: 1.283e1

VQSLOD
type: SiteQuality
SIO_000300: -2.573e0

GenotypeQuality
all individuals: 97
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2227
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1233
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7388
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.03828235770711e-4
allele num: 9874
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515427047341941e-5
allele num: 65988
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

FS
type: SiteQuality
SIO_000300: 1.1691e1

MQRankSum
type: SiteQuality
SIO_000300: 2.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.219e0

QD
type: SiteQuality
SIO_000300: 1.827e1

DP
type: SiteQuality
SIO_000300: 3.007416e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.4e-1

MQ
type: SiteQuality
SIO_000300: 5.843e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

GenotypeQuality
all individuals: 139
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8566
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
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GenotypeQuality
all individuals: 8
bin: 1.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1901
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39014
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515427047341941e-5
allele num: 65988
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.27e0

MQ
type: SiteQuality
SIO_000300: 5.668e1

DP
type: SiteQuality
SIO_000300: 3.007592e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

FS
type: SiteQuality
SIO_000300: 2.316e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
type: SiteQuality
SIO_000300: 1.375e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.746e-1

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1825
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.030578537442798e-5
allele num: 65994
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15380
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.586e0

MQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

FS
type: SiteQuality
SIO_000300: 1.917e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.39e-1

QD
type: SiteQuality
SIO_000300: 1.182e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQ
type: SiteQuality
SIO_000300: 5.872e1

DP
type: SiteQuality
SIO_000300: 3.007819e6

GenotypeQuality
all individuals: 326
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2233
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variant carriers: 0

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1825
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515243348081702e-5
allele num: 65996
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.907e1

FS
type: SiteQuality
SIO_000300: 3.279e0

MQRankSum
type: SiteQuality
SIO_000300: 2.37e0

VQSLOD
type: SiteQuality
SIO_000300: -1.582e0

DP
type: SiteQuality
SIO_000300: 3.007684e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.955e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
SIO_000300: 1.223e1

GenotypeQuality
all individuals: 1825
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2236
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1235
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variant carriers: 0

GenotypeQuality
all individuals: 39015
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variant carriers: 1

GenotypeQuality
all individuals: 148
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variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.511264487563485e-5
allele num: 15358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.0072e6

FS
type: SiteQuality
SIO_000300: 3.248e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.057e0

VQSLOD
type: SiteQuality
SIO_000300: -1.438e0

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

QD
type: SiteQuality
SIO_000300: 1.479e1

MQ
type: SiteQuality
SIO_000300: 5.791e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2235
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1824
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variant carriers: 1

GenotypeQuality
all individuals: 1145
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.013171225937183e-4
allele num: 9870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65996
num of homozygotes: 0

East Asian
type: Population
allele count: 23
allele frequency: 3.112313937753721e-3
allele num: 7390
num of homozygotes: 8

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e0

MQRankSum
type: SiteQuality
SIO_000300: -1.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.331e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.67e0

DP
type: SiteQuality
SIO_000300: 3.006846e6

MQ
type: SiteQuality
SIO_000300: 5.666e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65992
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.869966294128082e-5
allele num: 11274
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15334
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9868
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.903e1

VQSLOD
type: SiteQuality
SIO_000300: 1.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e-1

FS
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.005076e6

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.087e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.63e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11276
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515886490419597e-5
allele num: 65968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.560656734569778e-4
allele num: 6578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15262
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.998471e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

FS
type: SiteQuality
SIO_000300: 1.216e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.321e0

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.828e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQRankSum
type: SiteQuality
SIO_000300: 3.38e-1

QD
type: SiteQuality
SIO_000300: 1.037e1

VQSLOD
type: SiteQuality
SIO_000300: -1.208e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1822
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1884
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11276
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15262
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
allele num: 7386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515886490419597e-5
allele num: 65968
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.38e-1

MQ
type: SiteQuality
SIO_000300: 5.828e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.208e0

DP
type: SiteQuality
SIO_000300: 2.998471e6

FS
type: SiteQuality
SIO_000300: 1.216e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.321e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 39026
bin: 9.75e1
variant carriers: 10

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65956
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
allele num: 7386
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11276
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.563402467839327e-4
allele num: 15236
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.377e0

MQ
type: SiteQuality
SIO_000300: 5.801e1

MQRankSum
type: SiteQuality
SIO_000300: 5.88e-1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

DP
type: SiteQuality
SIO_000300: 2.994601e6

ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
all individuals: 1820
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65948
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15200
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.353912808015164e-4
allele num: 7386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11278
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.908e1

DP
type: SiteQuality
SIO_000300: 2.992676e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.44e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.68e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.905e0

FS
type: SiteQuality
SIO_000300: 2.832e0

QD
type: SiteQuality
SIO_000300: 1.367e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.57e-1

GenotypeQuality
all individuals: 297
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2085
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5795
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.633059166887768e-5
allele num: 15076
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65910
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11276
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.858e1

MQRankSum
type: SiteQuality
SIO_000300: -1.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.578e0

DP
type: SiteQuality
SIO_000300: 2.982675e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.54e0

FS
type: SiteQuality
SIO_000300: 1.701e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

QD
type: SiteQuality
SIO_000300: 1.635e1

GenotypeQuality
all individuals: 137
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2050
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39017
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518095700752976e-5
allele num: 65872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14964
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9844
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.453e0

DP
type: SiteQuality
SIO_000300: 2.979972e6

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.31e-2

QD
type: SiteQuality
SIO_000300: 2.667e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-2

GenotypeQuality
all individuals: 439
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1196
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39017
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.355380862022228e-4
allele num: 7378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65866
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.293e0

DP
type: SiteQuality
SIO_000300: 2.978266e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

MQ
type: SiteQuality
SIO_000300: 5.343e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.08e-1

FS
type: SiteQuality
SIO_000300: 4.661e0

VQSLOD
type: SiteQuality
SIO_000300: -1.6e0

QD
type: SiteQuality
SIO_000300: 1.154e1

GenotypeQuality
all individuals: 108
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1819
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39016
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1193
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.705109293281481e-5
allele num: 14914
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65858
num of homozygotes: 0