19-9435417-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9435417
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9435417
    reference: chr 19
allele count: 2
allele frequency: 1.621796951021732e-4
allele num: 12332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-96C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.-234C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-288C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.97C>T
  hgvsp: ENSP00000474354.1:p.Pro33Ser
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-519C>T
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-431C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-120C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-519C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.97C>T
  hgvsp: ENSP00000473968.1:p.Pro33Ser
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-431C>T
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.-96C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.-234C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.-234C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.52C>T
  hgvsp: ENSP00000474108.1:p.Pro18Ser
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.79C>T
  hgvsp: ENSP00000474719.1:p.Pro27Ser
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.-159C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.79C>T
  hgvsp: ENSP00000473974.1:p.Pro27Ser
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.97C>T
  hgvsp: ENSP00000468153.2:p.Pro33Ser
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474918
  ensembl transcript: ENST00000605093
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605093.1:c.74C>T
  hgvsp: ENSP00000474918.1:p.Pro26Ser
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000603099
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603099.1:n.99C>T
  variant of: http://identifiers.org/hgnc/42964
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro33Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/19-9435448-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9435448
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9435448
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 12334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.109C>A
  hgvsp: ENSP00000474716.1:p.Ser37Ter
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.110C>A
  hgvsp: ENSP00000473974.1:p.Ser37Ter
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.110C>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474918
  ensembl transcript: ENST00000605093
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605093.1:c.105C>A
  hgvsp: ENSP00000474918.1:p.Ser36Ter
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.-128C>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.110C>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.83C>A
  hgvsp: ENSP00000474108.1:p.Ser28Ter
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-257C>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.128C>A
  hgvsp: ENSP00000474354.1:p.Ser43Ter
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.-203C>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-400C>A
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-128C>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.128C>A
  hgvsp: ENSP00000473968.1:p.Ser43Ter
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000603099
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603099.1:n.130C>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.-65C>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-89C>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-400C>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.128C>A
  hgvsp: ENSP00000468153.2:p.Ser43Ter
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.-128C>A
  variant of: http://identifiers.org/hgnc/42964
canonical: false
consequence: stop gained
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser43Ter
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

19-9435464-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9435464
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9435464
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 12328
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-120+8C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-57+8C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.-195+8C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+8C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.136+8C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.136+8C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+8C>T
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.-375+8C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.-120+8C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.69+8C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+8C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-480+8C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.118+8C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-480+8C>T
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.-120+8C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.118+8C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474918
  ensembl transcript: ENST00000605093
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605093.1:c.113+8C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.-195+8C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.-57+8C>T
  variant of: http://identifiers.org/hgnc/28197
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.-480+8C>T
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

19-9435494-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9435494
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9435494
    reference: chr 19
allele count: 1
allele frequency: 8.122157244964262e-5
allele num: 12312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.118+38G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-392+38G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-120+38G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.-127+38G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.118+38G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.118+38G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+38G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.-120+38G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.117+38G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+38G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.136+38G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.-120+38G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+38G>A
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+38G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-81+551G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.-195+38G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.-120+38G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-57+38G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.-195+38G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-480+38G>A
  variant of: http://identifiers.org/hgnc/12966
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

19-9435504-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9435504
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9435504
    reference: chr 19
allele count: 1
allele frequency: 8.119519324455992e-5
allele num: 12316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.118+48G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.69+48G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.-57+48G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.118+48G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.-195+48G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.-127+48G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+48G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.118+48G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+48G>A
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.117+48G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-81+561G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-480+48G>A
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-57+48G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.-195+48G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-81+48G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+48G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.-57+48G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474918
  ensembl transcript: ENST00000605093
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605093.1:c.113+48G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-392+48G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-120+48G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.136+48G>A
  variant of: http://identifiers.org/hgnc/42964
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

19-9443678-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9443678
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9443678
    reference: chr 19
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+8222C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.-119-4794C>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+8222C>G
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+8222C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-56-5492C>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-119-4794C>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.119-4794C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.119-4794C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+8222C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-8100C>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-8100C>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+2813C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000603099
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603099.1:n.139-13C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-8100C>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-392+8222C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+8222C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-479-5492C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.-119-4794C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.137-5492C>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.-194-4794C>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.137-8100C>G
  variant of: http://identifiers.org/hgnc/42964
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

19-9443685-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9443685
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9443685
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 2
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+8229G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.118-6G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.-119-4787G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.-119-4787G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-119-4787G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+8229G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.137-5485G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-479-5485G>A
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.-56-5485G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-8093G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000603099
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603099.1:n.139-6G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+2820G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-8093G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.-126-4787G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.119-4787G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-479-5485G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-392+8229G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.119-4787G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.-374-6G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-56-5485G>A
  variant of: http://identifiers.org/hgnc/28197
canonical: false
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: n.139-6G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-9443779-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9443779
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9443779
    reference: chr 19
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-479-5391T>C
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.119-4693T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000603099
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603099.1:n.227T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+8323T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.-119-4693T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-7999T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*6T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.-126-4693T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-119-4693T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.-286T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-7999T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+2914T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-56-5391T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+8323T>C
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.-194-4693T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.-56-5391T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-7999T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+8323T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.-119-4693T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.119-4693T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.-56-5391T>C
  variant of: http://identifiers.org/hgnc/42964
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

19-9448656-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9448656
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9448656
    reference: chr 19
allele count: 7
allele frequency: 5.679052409540809e-4
allele num: 12326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.-57+115G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.-57+122G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.-57+122G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-3122G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13200G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*17-3122G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.-10G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+7791G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.-57+122G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.137-514G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.-10G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-479-514G>A
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-57+122G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.-10G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.303G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.-10G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-56-514G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.-56-514G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-479-514G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13200G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+13200G>A
  variant of: http://identifiers.org/hgnc/42964
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

19-9448680-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9448680
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9448680
    reference: chr 19
allele count: 1
allele frequency: 8.112932013629726e-5
allele num: 12326
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+13224T>G
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.15T>G
  hgvsp: ENST00000586255.1:c.15T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-3098T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-56-490T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.15T>G
  hgvsp: ENST00000592896.1:c.15T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13224T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-3098T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+13224T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.181+146T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.-57+146T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-57+146T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-392+13224T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.327T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.15T>G
  hgvsp: ENST00000588124.1:c.15T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000603099
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603099.1:n.238-490T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*17-3098T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.-57+146T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13224T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.137-490T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474918
  ensembl transcript: ENST00000605093
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605093.1:c.113+13224T>G
  variant of: http://identifiers.org/hgnc/42964
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly5Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

19-9448694-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9448694
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9448694
    reference: chr 19
allele count: 25
allele frequency: 2.028233003407431e-3
allele num: 12326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.340+1G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*17-3084G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-479-476G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.-56-476G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.-57+160G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.28+1G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.28+1G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.137-476G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.28+1G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.28+1G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.181+160G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.-56-476G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13238G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.-57+153G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13238G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-56-476G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+7829G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+13238G>A
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+13238G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+13238G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.-57+160G>A
  variant of: http://identifiers.org/hgnc/28197
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.28+1G>A
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

19-9448702-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9448702
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9448702
    reference: chr 19
allele count: 1
allele frequency: 8.114248620577734e-5
allele num: 12324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13246G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000603099
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603099.1:n.238-468G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.-56-468G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-57+168G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-3076G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+13246G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.28+9G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.-57+168G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-3076G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.137-3076G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.-57+168G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-3076G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.-57+161G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+13246G>A
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13246G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13246G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-56-468G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.28+9G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.28+9G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+7837G>A
  variant of: http://identifiers.org/hgnc/42964
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

19-9448706-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9448706
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9448706
    reference: chr 19
allele count: 1
allele frequency: 8.115565654926148e-5
allele num: 12322
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-3072T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+7841T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-57+172T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.-57+165T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.181+172T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+13250T>G
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.-57+172T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-3072T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-392+13250T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*17-3072T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.-56-464T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13250T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-479-464T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.137-464T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-479-464T>G
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-56-464T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.28+13T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.28+13T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13250T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000603099
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603099.1:n.238-464T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13250T>G
  variant of: http://identifiers.org/hgnc/42964
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum

19-9448721-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9448721
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9448721
    reference: chr 19
allele count: 18
allele frequency: 1.461276181198246e-3
allele num: 12318
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.-57+187A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.-56-449A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-3057A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-57+187A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.28+28A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+7856A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*17-3057A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-3057A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.340+28A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.-57+187A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.-57+180A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13265A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+13265A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.181+187A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+13265A>G
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-3057A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.28+28A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.-56-449A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.137-3057A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13265A>G
  variant of: http://identifiers.org/hgnc/42964
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

19-9448722-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9448722
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9448722
    reference: chr 19
allele count: 3
allele frequency: 2.435064935064935e-4
allele num: 12320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+13266C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.137-448C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-3056C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.-57+181C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13266C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-479-448C>T
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+7857C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-3056C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-3056C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.137-3056C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000603099
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603099.1:n.238-448C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.28+29C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13266C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.-57+188C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.28+29C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*17-3056C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-57+188C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.-57+188C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.181+188C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13266C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.28+29C>T
  variant of: http://identifiers.org/hgnc/28197
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

19-9449122-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449122
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449122
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 96528
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.29-48G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-56-48G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-392+13666G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-2656G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-479-48G>A
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.182-48G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+13666G>A
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.-56-48G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13666G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2656G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+13666G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8257G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.29-48G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+13666G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-479-48G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.341-48G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*17-2656G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13666G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.-56-48G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13666G>A
  variant of: http://identifiers.org/hgnc/42964
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

19-9449128-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449128
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449128
    reference: chr 19
allele count: 2
allele frequency: 2.059774660652125e-5
allele num: 97098
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8263A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.137-42A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.137-2650A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13672A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.-56-42A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-56-42A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-56-42A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13672A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.29-42A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000603099
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603099.1:n.238-42A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.-56-42A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2650A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-2650A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.-56-42A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.182-42A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474918
  ensembl transcript: ENST00000605093
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605093.1:c.113+13672A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.29-42A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-2650A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.-56-42A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+13672A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-479-42A>G
  variant of: http://identifiers.org/hgnc/12966
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-9449137-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449137
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449137
    reference: chr 19
allele count: 1
allele frequency: 1.015331505736623e-5
allele num: 98490
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.-56-33C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*17-2641C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2641C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13681C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.-56-33C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-56-33C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.-56-33C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.-56-33C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13681C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+13681C>T
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.29-33C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-56-33C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13681C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.182-33C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.-56-33C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.341-33C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-2641C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474918
  ensembl transcript: ENST00000605093
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605093.1:c.113+13681C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-2641C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.29-33C>T
  variant of: http://identifiers.org/hgnc/28197
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

19-9449144-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449144
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449144
    reference: chr 19
allele count: 1
allele frequency: 9.893545450947802e-6
allele num: 101076
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*17-2634C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.29-26C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.182-26C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13688C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-479-26C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-56-26C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2634C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.29-26C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.137-2634C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13688C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8279C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13688C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-56-26C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.-56-26C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.341-26C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.29-26C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+13688C>T
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-479-26C>T
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474918
  ensembl transcript: ENST00000605093
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605093.1:c.113+13688C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+13688C>T
  variant of: http://identifiers.org/hgnc/42964
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-9449145-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449145
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449144
    reference: chr 19
allele count: 2
allele frequency: 1.967690521634757e-5
allele num: 101642
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+13690delC
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.29-24delC
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.-56-24delC
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13690delC
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.-56-24delC
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.137-24delC
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.-56-24delC
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-392+13690delC
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.-56-24delC
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.-56-24delC
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13690delC
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.341-24delC
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.29-24delC
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-2632delC
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-479-24delC
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-2632delC
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.182-24delC
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13690delC
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+13690delC
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474918
  ensembl transcript: ENST00000605093
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605093.1:c.113+13690delC
  variant of: http://identifiers.org/hgnc/42964
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: TC
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

19-9449147-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449147
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449146
    reference: chr 19
allele count: 2
allele frequency: 1.943407960199005e-5
allele num: 102912
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+13692delG
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000603099
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603099.1:n.238-22delG
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-56-22delG
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474918
  ensembl transcript: ENST00000605093
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605093.1:c.113+13692delG
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-2630delG
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.-56-22delG
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+13692delG
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8283delG
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-392+13692delG
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-479-22delG
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.29-22delG
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13692delG
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-2630delG
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2630delG
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.341-22delG
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.-56-22delG
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13692delG
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-479-22delG
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13692delG
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.-56-22delG
  variant of: http://identifiers.org/hgnc/28197
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: AG
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

19-9449149-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449149
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449149
    reference: chr 19
allele count: 67453
allele frequency: 5.874161804406514e-1
allele num: 114830
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-56-21A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.341-21A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474918
  ensembl transcript: ENST00000605093
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605093.1:c.113+13693A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+13693A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.-56-21A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2629A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.137-21A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-2629A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.29-21A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-2629A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8284A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.-56-21A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*17-2629A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.29-21A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13693A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+13693A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.-56-21A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13693A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.29-21A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.29-21A>G
  variant of: http://identifiers.org/hgnc/28197
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 19561
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

19-9449150-T-TAAAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449150
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449154
    reference: chr 19
allele count: 2
allele frequency: 1.717711321435319e-5
allele num: 116434
alternate allele: TAAAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.137-20_137-19insAAAA
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-2628_119-2627insAAAA
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-2628_-80-2627insAAAA
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-479-20_-479-19insAAAA
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2628_-80-2627insAAAA
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-56-20_-56-19insAAAA
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13694_-249+13695insAAAA
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13694_118+13695insAAAA
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-479-20_-479-19insAAAA
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+13694_91+13695insAAAA
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.182-20_182-19insAAAA
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+13694_-392+13695insAAAA
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.341-20_341-19insAAAA
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13694_136+13695insAAAA
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000603099
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603099.1:n.238-20_238-19insAAAA
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.-56-20_-56-19insAAAA
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-56-20_-56-19insAAAA
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.137-2628_137-2627insAAAA
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+13694_136+13695insAAAA
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474918
  ensembl transcript: ENST00000605093
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605093.1:c.113+13694_113+13695insAAAA
  variant of: http://identifiers.org/hgnc/42964
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP

19-9449152-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449152
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449152
    reference: chr 19
allele count: 2
allele frequency: 1.711303157354325e-5
allele num: 116870
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-56-18T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13696T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.137-18T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+13696T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.182-18T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13696T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-56-18T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.-56-18T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.-56-18T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.-56-18T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+13696T>C
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*17-2626T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000603099
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603099.1:n.238-18T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8287T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.341-18T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-479-18T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+13696T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-479-18T>C
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-2626T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.29-18T>C
  variant of: http://identifiers.org/hgnc/28197
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

19-9449155-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449155
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449155
    reference: chr 19
allele count: 2
allele frequency: 1.706426401829289e-5
allele num: 117204
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13699T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.29-15T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474918
  ensembl transcript: ENST00000605093
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605093.1:c.113+13699T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000603099
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603099.1:n.238-15T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8290T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-56-15T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-479-15T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+13699T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.137-2623T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.182-15T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13699T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-479-15T>C
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+13699T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-56-15T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.29-15T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-2623T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.-56-15T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*17-2623T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.137-15T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.-56-15T>C
  variant of: http://identifiers.org/hgnc/42964
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

19-9449155-TTTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449155
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449152
    reference: chr 19
allele count: 5
allele frequency: 4.266066004573223e-5
allele num: 117204
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.29-6_29-4delCTT
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-56-6_-56-4delCTT
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-479-6_-479-4delCTT
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-2614_119-2612delCTT
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.341-6_341-4delCTT
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.-56-6_-56-4delCTT
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.-56-6_-56-4delCTT
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+13708_-392+13710delCTT
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-56-6_-56-4delCTT
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.182-6_182-4delCTT
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*17-2614_*17-2612delCTT
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.29-6_29-4delCTT
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474918
  ensembl transcript: ENST00000605093
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605093.1:c.113+13708_113+13710delCTT
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.-56-6_-56-4delCTT
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-392+13708_-392+13710delCTT
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2614_-80-2612delCTT
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+13708_136+13710delCTT
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.-56-6_-56-4delCTT
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.-56-6_-56-4delCTT
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13708_118+13710delCTT
  variant of: http://identifiers.org/hgnc/42964
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: TTTC
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-9449160-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449160
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449160
    reference: chr 19
allele count: 2
allele frequency: 1.69580627109159e-5
allele num: 117938
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000603099
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603099.1:n.238-10T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.29-10T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13704T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13704T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+13704T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.-56-10T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.29-10T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-56-10T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.29-10T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-2618T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+13704T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.341-10T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.-56-10T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-2618T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+13704T>C
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8295T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.182-10T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-479-10T>C
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13704T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2618T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.-56-10T>C
  variant of: http://identifiers.org/hgnc/42964
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

19-9449164-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449164
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449164
    reference: chr 19
allele count: 1
allele frequency: 8.430992327796981e-6
allele num: 118610
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.29-6C>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.-56-6C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-392+13708C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.-56-6C>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13708C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2614C>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474918
  ensembl transcript: ENST00000605093
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605093.1:c.113+13708C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.137-6C>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.182-6C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.-56-6C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.-56-6C>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-56-6C>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.137-2614C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8299C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-479-6C>G
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.29-6C>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.-56-6C>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.29-6C>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-2614C>G
  variant of: http://identifiers.org/hgnc/28197
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.-56-6C>G
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

19-9449165-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449165
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449165
    reference: chr 19
allele count: 2
allele frequency: 1.682821755519655e-5
allele num: 118848
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.29-5T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.341-5T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13709T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-56-5T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.-56-5T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.-56-5T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474918
  ensembl transcript: ENST00000605093
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605093.1:c.113+13709T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-479-5T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.29-5T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13709T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-56-5T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.29-5T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.-56-5T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000603099
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603099.1:n.238-5T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.-56-5T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+13709T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.137-5T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8300T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.182-5T>C
  variant of: http://identifiers.org/hgnc/42964
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.-56-5T>C
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS

19-9449167-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449167
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449167
    reference: chr 19
allele count: 4
allele frequency: 3.356155188615922e-5
allele num: 119184
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-479-3A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-2611A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474918
  ensembl transcript: ENST00000605093
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605093.1:c.113+13711A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000603099
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603099.1:n.238-3A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-392+13711A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.29-3A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-56-3A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.-56-3A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.182-3A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.137-2611A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.29-3A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.-56-3A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.-56-3A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13711A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-56-3A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2611A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.-56-3A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.-56-3A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.137-3A>G
  variant of: http://identifiers.org/hgnc/28197
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.-56-3A>G
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

19-9449169-GATC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449169
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449166
    reference: chr 19
allele count: 2
allele frequency: 1.674172540221995e-5
allele num: 119462
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.185_187delATC
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.-53_-51delATC
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.-53_-51delATC
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-53_-51delATC
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-476_-474delATC
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: splice_region_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.32_34delATC
  hgvsp: ENSP00000466325.2:p.His11del
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2605_-80-2603delATC
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: splice_region_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.140_142delATC
  hgvsp: ENSP00000468153.2:p.His47del
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.344_346delATC
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: splice_region_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.32_34delATC
  hgvsp: ENSP00000466496.2:p.His11del
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: splice_region_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.32_34delATC
  hgvsp: ENSP00000465526.2:p.His11del
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+13717_136+13719delATC
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000603099
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603099.1:n.241_243delATC
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.-53_-51delATC
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-53_-51delATC
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13717_-249+13719delATC
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13717_136+13719delATC
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.-53_-51delATC
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.-53_-51delATC
  variant of: http://identifiers.org/hgnc/28197
canonical: false
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.His11del
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: GATC
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-9449182-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449182
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449182
    reference: chr 19
allele count: 1
allele frequency: 8.278831029058698e-6
allele num: 120790
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.41A>C
  hgvsp: ENSP00000465526.2:p.Gln14Pro
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*17-2596A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-467A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.-44A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.-44A>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13726A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.194A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8317A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.-44A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.149A>C
  hgvsp: ENSP00000468153.2:p.Gln50Pro
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13726A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.41A>C
  hgvsp: ENSP00000465787.2:p.Gln14Pro
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-392+13726A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000603099
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603099.1:n.250A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+13726A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.137-2596A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-44A>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-467A>C
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.41A>C
  hgvsp: ENSP00000466325.2:p.Gln14Pro
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-44A>C
  variant of: http://identifiers.org/hgnc/28197
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gln50Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

19-9449198-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449198
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449198
    reference: chr 19
allele count: 12
allele frequency: 9.896907216494845e-5
allele num: 121250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.-28T>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.57T>A
  hgvsp: ENST00000585377.1:c.57T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.-28T>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.57T>A
  hgvsp: ENST00000592896.1:c.57T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8333T>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.-28T>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-451T>A
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2580T>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.165T>A
  hgvsp: ENST00000587557.1:c.165T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.-28T>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13742T>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-28T>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-2580T>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.137-2580T>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.369T>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.-28T>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.-28T>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.57T>A
  hgvsp: ENST00000586255.1:c.57T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+13742T>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-2580T>A
  variant of: http://identifiers.org/hgnc/28197
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu55Leu
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

19-9449223-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449223
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449223
    reference: chr 19
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2555A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.-3A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-2555A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.82A>G
  hgvsp: ENSP00000466496.2:p.Arg28Gly
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.-3A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.-3A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+13767A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.82A>G
  hgvsp: ENSP00000465787.2:p.Arg28Gly
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.82A>G
  hgvsp: ENSP00000466325.2:p.Arg28Gly
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.394A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.137-2555A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-426A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.-3A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13767A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.82A>G
  hgvsp: ENSP00000465526.2:p.Arg28Gly
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.190A>G
  hgvsp: ENSP00000468153.2:p.Arg64Gly
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.-3A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+13767A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.235A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000603099
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603099.1:n.291A>G
  variant of: http://identifiers.org/hgnc/42964
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg64Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD

19-9449224-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449224
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449224
    reference: chr 19
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+13768G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.-2G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.395G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.191G>A
  hgvsp: ENSP00000468153.2:p.Arg64Lys
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.-2G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2554G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.-2G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.-2G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.137-2554G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.-2G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8359G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.83G>A
  hgvsp: ENSP00000466496.2:p.Arg28Lys
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-2554G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-392+13768G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-425G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-425G>A
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474918
  ensembl transcript: ENST00000605093
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605093.1:c.113+13768G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.83G>A
  hgvsp: ENSP00000466325.2:p.Arg28Lys
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13768G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.83G>A
  hgvsp: ENSP00000465787.2:p.Arg28Lys
  variant of: http://identifiers.org/hgnc/28197
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg64Lys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ

19-9449229-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449229
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449229
    reference: chr 19
allele count: 3
allele frequency: 2.471984179301253e-5
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2549G>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.137-2549G>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+13773G>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.4G>T
  hgvsp: ENSP00000474076.1:p.Val2Leu
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.88G>T
  hgvsp: ENSP00000465526.2:p.Val30Leu
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-392+13773G>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.196G>T
  hgvsp: ENSP00000468153.2:p.Val66Leu
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.4G>T
  hgvsp: ENSP00000473911.1:p.Val2Leu
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.88G>T
  hgvsp: ENSP00000466325.2:p.Val30Leu
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13773G>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.4G>T
  hgvsp: ENSP00000325393.7:p.Val2Leu
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-2549G>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+13773G>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.241G>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.4G>T
  hgvsp: ENSP00000377461.1:p.Val2Leu
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13773G>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8364G>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.88G>T
  hgvsp: ENSP00000465787.2:p.Val30Leu
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.4G>T
  hgvsp: ENSP00000468299.1:p.Val2Leu
  variant of: http://identifiers.org/hgnc/28197
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Val2Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ

19-9449235-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449235
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449235
    reference: chr 19
allele count: 38
allele frequency: 3.131231562814153e-4
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.202G>A
  hgvsp: ENSP00000468153.2:p.Gly68Arg
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.10G>A
  hgvsp: ENSP00000377461.1:p.Gly4Arg
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-414G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+13779G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-414G>A
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13779G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000603099
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603099.1:n.303G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.10G>A
  hgvsp: ENSP00000474760.1:p.Gly4Arg
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.247G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.94G>A
  hgvsp: ENSP00000465526.2:p.Gly32Arg
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.10G>A
  hgvsp: ENSP00000467841.1:p.Gly4Arg
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.10G>A
  hgvsp: ENSP00000473911.1:p.Gly4Arg
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.10G>A
  hgvsp: ENSP00000474076.1:p.Gly4Arg
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.406G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-392+13779G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2543G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.10G>A
  hgvsp: ENSP00000468299.1:p.Gly4Arg
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.94G>A
  hgvsp: ENSP00000466325.2:p.Gly32Arg
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-2543G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.10G>A
  hgvsp: ENSP00000467048.1:p.Gly4Arg
  variant of: http://identifiers.org/hgnc/28197
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly4Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

19-9449242-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449242
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449242
    reference: chr 19
allele count: 151
allele frequency: 1.244314061572945e-3
allele num: 121352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-407T>G
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.17T>G
  hgvsp: ENSP00000474076.1:p.Leu6Trp
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.17T>G
  hgvsp: ENSP00000325393.7:p.Leu6Trp
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13786T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.17T>G
  hgvsp: ENSP00000377461.1:p.Leu6Trp
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.137-2536T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.101T>G
  hgvsp: ENSP00000465526.2:p.Leu34Trp
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.101T>G
  hgvsp: ENSP00000466496.2:p.Leu34Trp
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.17T>G
  hgvsp: ENSP00000467048.1:p.Leu6Trp
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-2536T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.413T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+13786T>G
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2536T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474918
  ensembl transcript: ENST00000605093
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605093.1:c.113+13786T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-2536T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.17T>G
  hgvsp: ENSP00000467841.1:p.Leu6Trp
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8377T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13786T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.101T>G
  hgvsp: ENSP00000466325.2:p.Leu34Trp
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*17-2536T>G
  variant of: http://identifiers.org/hgnc/42964
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu6Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

19-9449255-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449255
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449255
    reference: chr 19
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.114T>C
  hgvsp: ENST00000592896.1:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.30T>C
  hgvsp: ENST00000393883.2:c.30T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8390T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-394T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465526
  ensembl transcript: ENST00000585377
  gene symbol: ZNF559
  hgvsc: ENST00000585377.1:c.114T>C
  hgvsp: ENST00000585377.1:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.30T>C
  hgvsp: ENST00000317221.7:c.30T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.30T>C
  hgvsp: ENST00000603974.1:c.30T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-2523T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.30T>C
  hgvsp: ENST00000585352.1:c.30T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.30T>C
  hgvsp: ENST00000592504.1:c.30T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.114T>C
  hgvsp: ENST00000588124.1:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13799T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.137-2523T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-394T>C
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474918
  ensembl transcript: ENST00000605093
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605093.1:c.113+13799T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13799T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.114T>C
  hgvsp: ENST00000586255.1:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*17-2523T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-2523T>C
  variant of: http://identifiers.org/hgnc/28197
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser10Ser
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/19-9449262-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449262
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449262
    reference: chr 19
allele count: 3
allele frequency: 2.47320692497939e-5
allele num: 121300
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+13806A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.33+4A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+13806A>C
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-2516A>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.117+4A>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.270+4A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.117+4A>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-391+4A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.429+4A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13806A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.225+4A>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.117+4A>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.33+4A>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.33+4A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.33+4A>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2516A>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.33+4A>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.33+4A>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000603099
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603099.1:n.326+4A>C
  variant of: http://identifiers.org/hgnc/42964
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.33+4A>C
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-9449267-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449267
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449267
    reference: chr 19
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-2511G>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13811G>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.33+9G>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.33+9G>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-392+13811G>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-391+9G>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.117+9G>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.117+9G>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13811G>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13811G>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.270+9G>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.33+9G>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+13811G>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-391+9G>C
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*17-2511G>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.33+9G>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+13811G>C
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2511G>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-2511G>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.429+9G>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474918
  ensembl transcript: ENST00000605093
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605093.1:c.113+13811G>C
  variant of: http://identifiers.org/hgnc/42964
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-9449270-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449270
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449270
    reference: chr 19
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-2508A>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+13814A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.429+12A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13814A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.117+12A>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.117+12A>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.33+12A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000603099
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603099.1:n.326+12A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.33+12A>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2508A>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.117+12A>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-391+12A>C
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.33+12A>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.33+12A>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+13814A>C
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-2508A>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13814A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.33+12A>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13814A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8405A>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-391+12A>C
  variant of: http://identifiers.org/hgnc/42964
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum

19-9449272-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449272
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449272
    reference: chr 19
allele count: 1
allele frequency: 8.248239000973292e-6
allele num: 121238
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-2506T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13816T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.33+14T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.429+14T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-2506T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.225+14T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.117+14T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.137-2506T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.33+14T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-391+14T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.33+14T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2506T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+13816T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.117+14T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.33+14T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8407T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*17-2506T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13816T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.270+14T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.33+14T>C
  variant of: http://identifiers.org/hgnc/42964
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

19-9449275-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449275
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449275
    reference: chr 19
allele count: 3
allele frequency: 2.474920802534319e-5
allele num: 121216
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*17-2503T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13819T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.137-2503T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.225+17T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-2503T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.117+17T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.270+17T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-391+17T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.33+17T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2503T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.429+17T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13819T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.33+17T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13819T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+13819T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-2503T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+13819T>C
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.117+17T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474918
  ensembl transcript: ENST00000605093
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605093.1:c.113+13819T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.33+17T>C
  variant of: http://identifiers.org/hgnc/28197
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP

19-9449279-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449279
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449279
    reference: chr 19
allele count: 1
allele frequency: 8.251233559417133e-6
allele num: 121194
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.33+21T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13823T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.33+21T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+13823T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+13823T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000603099
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603099.1:n.326+21T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-2499T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.225+21T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.429+21T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+13823T>C
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-391+21T>C
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8414T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.33+21T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13823T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13823T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.137-2499T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474918
  ensembl transcript: ENST00000605093
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605093.1:c.113+13823T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.33+21T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-2499T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.33+21T>C
  variant of: http://identifiers.org/hgnc/28197
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

19-9449284-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449284
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449284
    reference: chr 19
allele count: 1
allele frequency: 8.255047961828658e-6
allele num: 121138
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-2494A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.270+26A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.33+26A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.33+26A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13828A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-391+26A>G
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.429+26A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+13828A>G
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.33+26A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2494A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13828A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.117+26A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.137-2494A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474918
  ensembl transcript: ENST00000605093
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605093.1:c.113+13828A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.33+26A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+13828A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-392+13828A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13828A>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.225+26A>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8419A>G
  variant of: http://identifiers.org/hgnc/42964
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum

19-9449289-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449289
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449289
    reference: chr 19
allele count: 1
allele frequency: 8.257638315441784e-6
allele num: 121100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13833C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13833C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.33+31C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-391+31C>T
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13833C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-391+31C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.429+31C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-392+13833C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.33+31C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.33+31C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2489C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-2489C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*17-2489C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.33+31C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+13833C>T
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.225+31C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8424C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.33+31C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.117+31C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.270+31C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-2489C>T
  variant of: http://identifiers.org/hgnc/28197
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-9449295-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449295
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449295
    reference: chr 19
allele count: 2
allele frequency: 1.652264428399121e-5
allele num: 121046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8430C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-391+37C>T
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.33+37C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.33+37C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13839C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-2483C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.33+37C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.117+37C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.33+37C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*17-2483C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.429+37C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+13839C>T
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.33+37C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-2483C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+13839C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.270+37C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13839C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.117+37C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.117+37C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-391+37C>T
  variant of: http://identifiers.org/hgnc/42964
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum

19-9449297-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449297
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449297
    reference: chr 19
allele count: 2
allele frequency: 1.652127940787734e-5
allele num: 121056
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.117+39T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13841T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2481T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8432T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*17-2481T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13841T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.33+39T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.429+39T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.33+39T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13841T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.117+39T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.117+39T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.270+39T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.33+39T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.33+39T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-2481T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.137-2481T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.33+39T>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.33+39T>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-391+39T>G
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-392+13841T>G
  variant of: http://identifiers.org/hgnc/42964
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

19-9449308-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449308
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449308
    reference: chr 19
allele count: 1
allele frequency: 8.274857672448034e-6
allele num: 120848
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+13852T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.429+50T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8443T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.33+50T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.225+50T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+13852T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+13852T>C
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+13852T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466496
  ensembl transcript: ENST00000592896
  gene symbol: ZNF559
  hgvsc: ENST00000592896.1:c.117+50T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-2470T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+13852T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.33+50T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-392+13852T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.33+50T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.33+50T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.117+50T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.33+50T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-391+50T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.117+50T>C
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.33+50T>C
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-2470T>C
  variant of: http://identifiers.org/hgnc/28197
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

19-9449831-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449831
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449831
    reference: chr 19
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.34-38C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467048
  ensembl transcript: ENST00000585352
  gene symbol: ZNF559
  hgvsc: ENST00000585352.1:c.34-38C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-1947C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.34-38C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+14375C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-392+14375C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.429+573C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.34-38C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.226-38C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.34-38C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+14375C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.271-38C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8966C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+14375C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+14375C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+14375C>T
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-1947C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.118-38C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.34-38C>T
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000467841
  ensembl transcript: ENST00000592504
  gene symbol: ZNF559
  hgvsc: ENST00000592504.1:c.34-38C>T
  variant of: http://identifiers.org/hgnc/28197
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

19-9449832-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449832
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449832
    reference: chr 19
allele count: 3
allele frequency: 2.472269378471478e-5
allele num: 121346
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+14376G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.34-37G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+14376G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.429+574G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.34-37G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473346
  ensembl transcript: ENST00000602738
  gene symbol: ZNF177
  hgvsc: ENST00000602738.1:c.-391+574G>A
  variant of: http://identifiers.org/hgnc/12966
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*17-1946G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000603099
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603099.1:n.327-37G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.118-37G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474354
  ensembl transcript: ENST00000605775
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605775.1:c.136+14376G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.34-37G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474918
  ensembl transcript: ENST00000605093
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605093.1:c.113+14376G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474076
  ensembl transcript: ENST00000605071
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605071.1:c.34-37G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-1946G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000413568
  ensembl transcript: ENST00000446085
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000446085.4:c.-392+14376G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000466325
  ensembl transcript: ENST00000588124
  gene symbol: ZNF559
  hgvsc: ENST00000588124.1:c.118-37G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-1946G>A
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.271-37G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-391+574G>A
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474760
  ensembl transcript: ENST00000603380
  gene symbol: ZNF559
  hgvsc: ENST00000603380.1:c.34-37G>A
  variant of: http://identifiers.org/hgnc/28197
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-9449839-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9449839
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 9449839
    reference: chr 19
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605301
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605301.1:n.429+581C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474719
  ensembl transcript: ENST00000605750
  gene symbol: ZNF559
  hgvsc: ENST00000605750.1:c.119-1939C>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474716
  ensembl transcript: ENST00000604543
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604543.1:c.*17-1939C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605522
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605522.1:n.271-30C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000377461
  ensembl transcript: ENST00000393883
  gene symbol: ZNF559
  hgvsc: ENST00000393883.2:c.34-30C>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474108
  ensembl transcript: ENST00000593242
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000593242.3:c.91+14383C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468299
  ensembl transcript: ENST00000592298
  gene symbol: ZNF559
  hgvsc: ENST00000592298.1:c.34-30C>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473974
  ensembl transcript: ENST00000605006
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605006.1:c.118+14383C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl transcript: ENST00000605471
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000605471.1:n.144+8974C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000442832
  ensembl transcript: ENST00000538743
  gene symbol: ZNF559
  hgvsc: ENST00000538743.1:c.-80-1939C>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000474260
  ensembl transcript: ENST00000589208
  gene symbol: ZNF559
  hgvsc: ENST00000589208.1:c.-80-1939C>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473968
  ensembl transcript: ENST00000604886
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000604886.1:c.136+14383C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474602
  ensembl transcript: ENST00000603656
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603656.1:c.-249+14383C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000325393
  ensembl transcript: ENST00000317221
  gene symbol: ZNF559
  hgvsc: ENST00000317221.7:c.34-30C>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000465787
  ensembl transcript: ENST00000586255
  gene symbol: ZNF559
  hgvsc: ENST00000586255.1:c.118-30C>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188321
  ensembl protein: ENSP00000468153
  ensembl transcript: ENST00000587557
  gene symbol: ZNF559
  hgvsc: ENST00000587557.1:c.226-30C>G
  variant of: http://identifiers.org/hgnc/28197
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000473911
  ensembl transcript: ENST00000603974
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603974.1:c.34-30C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000445323
  ensembl transcript: ENST00000541595
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000541595.2:c.-391+581C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270011
  ensembl protein: ENSP00000474980
  ensembl transcript: ENST00000603024
  gene symbol: ZNF559-ZNF177
  hgvsc: ENST00000603024.1:c.137-1939C>G
  variant of: http://identifiers.org/hgnc/42964
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188629
  ensembl protein: ENSP00000473272
  ensembl transcript: ENST00000602856
  gene symbol: ZNF177
  hgvsc: ENST00000602856.1:c.-392+14383C>G
  variant of: http://identifiers.org/hgnc/12966
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
reference allele: C

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473911
ensembl transcript: ENST00000603974
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603974.1:c.-159C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605301
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605301.1:n.79C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: missense_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.97C>T
hgvsp: ENSP00000474980.1:p.Pro33Ser
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605522
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605522.1:n.79C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474076
ensembl transcript: ENST00000605071
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605071.1:c.-96C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: true
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000377461
ensembl transcript: ENST00000393883
gene symbol: ZNF559
hgvsc: ENST00000393883.2:c.-159C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467841
ensembl transcript: ENST00000592504
gene symbol: ZNF559
hgvsc: ENST00000592504.1:c.-159C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605471
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605471.1:n.30C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000325393
ensembl transcript: ENST00000317221
gene symbol: ZNF559
hgvsc: ENST00000317221.7:c.-166C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474260
ensembl transcript: ENST00000589208
gene symbol: ZNF559
hgvsc: ENST00000589208.1:c.-81+474C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.-414C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: missense_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474716
ensembl transcript: ENST00000604543
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604543.1:c.78C>T
hgvsp: ENSP00000474716.1:p.Pro27Ser
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 164
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1008
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1756
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 60
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 229
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2742
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2904
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 361
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3722
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2608
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1059
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312335958005249e-4
allele num: 7620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 5.050505050505051e-3
allele num: 198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.312e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e0

QD
type: SiteQuality
SIO_000300: 7.74e0

MQRankSum
type: SiteQuality
SIO_000300: -7.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.87e0

FS
type: SiteQuality
SIO_000300: 4.622e0

DP
type: SiteQuality
SIO_000300: 1.73545e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.85e-2

MQ
type: SiteQuality
SIO_000300: 5.876e1

Annotation
canonical: true
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000445323
ensembl transcript: ENST00000541595
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000541595.2:c.-488C>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.-383C>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: stop_gained
consequence: NMD_transcript_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.128C>A
hgvsp: ENSP00000474980.1:p.Ser43Ter
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473346
ensembl transcript: ENST00000602738
gene symbol: ZNF177
hgvsc: ENST00000602738.1:c.-488C>A
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474260
ensembl transcript: ENST00000589208
gene symbol: ZNF559
hgvsc: ENST00000589208.1:c.-81+505C>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000465787
ensembl transcript: ENST00000586255
gene symbol: ZNF559
hgvsc: ENST00000586255.1:c.-203C>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: stop_gained
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474719
ensembl transcript: ENST00000605750
gene symbol: ZNF559
hgvsc: ENST00000605750.1:c.110C>A
hgvsp: ENSP00000474719.1:p.Ser37Ter
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467841
ensembl transcript: ENST00000592504
gene symbol: ZNF559
hgvsc: ENST00000592504.1:c.-128C>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000465526
ensembl transcript: ENST00000585377
gene symbol: ZNF559
hgvsc: ENST00000585377.1:c.-203C>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.-65C>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000325393
ensembl transcript: ENST00000317221
gene symbol: ZNF559
hgvsc: ENST00000317221.7:c.-135C>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605471
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605471.1:n.61C>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474760
ensembl transcript: ENST00000603380
gene symbol: ZNF559
hgvsc: ENST00000603380.1:c.-65C>A
variant of: http://identifiers.org/hgnc/28197

GenotypeDepth
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1761
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2867
bin: 2.5e0
variant carriers: 1

GenotypeDepth
all individuals: 361
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2730
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1008
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 245
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2576
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3718
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 1.7353e5

VQSLOD
type: SiteQuality
SIO_000300: -7.885e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.79e-2

QD
type: SiteQuality
SIO_000300: 8.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474602
ensembl transcript: ENST00000603656
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603656.1:c.-249+8C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000442832
ensembl transcript: ENST00000538743
gene symbol: ZNF559
hgvsc: ENST00000538743.1:c.-81+8C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000465526
ensembl transcript: ENST00000585377
gene symbol: ZNF559
hgvsc: ENST00000585377.1:c.-195+8C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474719
ensembl transcript: ENST00000605750
gene symbol: ZNF559
hgvsc: ENST00000605750.1:c.118+8C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473968
ensembl transcript: ENST00000604886
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604886.1:c.136+8C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+8C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474076
ensembl transcript: ENST00000605071
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605071.1:c.-57+8C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468299
ensembl transcript: ENST00000592298
gene symbol: ZNF559
hgvsc: ENST00000592298.1:c.-120+8C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000325393
ensembl transcript: ENST00000317221
gene symbol: ZNF559
hgvsc: ENST00000317221.7:c.-127+8C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474260
ensembl transcript: ENST00000589208
gene symbol: ZNF559
hgvsc: ENST00000589208.1:c.-81+521C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.138+8C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474716
ensembl transcript: ENST00000604543
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604543.1:c.117+8C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474108
ensembl transcript: ENST00000593242
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000593242.3:c.91+8C>T
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1763
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 164
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 361
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2871
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1010
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2691
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2532
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1051
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3688
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 155
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.54e0

DP
type: SiteQuality
SIO_000300: 1.73256e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 5.482e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.85e-2

MQ
type: SiteQuality
SIO_000300: 5.863e1

QD
type: SiteQuality
SIO_000300: 1.523e1

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000445323
ensembl transcript: ENST00000541595
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000541595.2:c.-480+38G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468153
ensembl transcript: ENST00000587557
gene symbol: ZNF559
hgvsc: ENST00000587557.1:c.136+38G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474602
ensembl transcript: ENST00000603656
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603656.1:c.-249+38G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+38G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474108
ensembl transcript: ENST00000593242
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000593242.3:c.91+38G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466496
ensembl transcript: ENST00000592896
gene symbol: ZNF559
hgvsc: ENST00000592896.1:c.-195+38G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474076
ensembl transcript: ENST00000605071
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605071.1:c.-57+38G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.-375+38G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.-57+38G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605471
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605471.1:n.69+38G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.138+38G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000442832
ensembl transcript: ENST00000538743
gene symbol: ZNF559
hgvsc: ENST00000538743.1:c.-81+38G>A
variant of: http://identifiers.org/hgnc/28197

GenotypeDepth
all individuals: 2888
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 242
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 176
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1012
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2447
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1756
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 375
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2102
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 77
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3346
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.798561151079137e-3
allele num: 556
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.22e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.812e0

MQRankSum
type: SiteQuality
SIO_000300: 1.82e0

QD
type: SiteQuality
SIO_000300: 1.26e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.72483e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.45e-1

MQ
type: SiteQuality
SIO_000300: 5.833e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.07e-1

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473968
ensembl transcript: ENST00000604886
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604886.1:c.136+48G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.-375+48G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467841
ensembl transcript: ENST00000592504
gene symbol: ZNF559
hgvsc: ENST00000592504.1:c.-120+48G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466496
ensembl transcript: ENST00000592896
gene symbol: ZNF559
hgvsc: ENST00000592896.1:c.-195+48G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474108
ensembl transcript: ENST00000593242
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000593242.3:c.91+48G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473911
ensembl transcript: ENST00000603974
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603974.1:c.-120+48G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474602
ensembl transcript: ENST00000603656
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603656.1:c.-249+48G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468299
ensembl transcript: ENST00000592298
gene symbol: ZNF559
hgvsc: ENST00000592298.1:c.-120+48G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000445323
ensembl transcript: ENST00000541595
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000541595.2:c.-480+48G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.138+48G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468153
ensembl transcript: ENST00000587557
gene symbol: ZNF559
hgvsc: ENST00000587557.1:c.136+48G>A
variant of: http://identifiers.org/hgnc/28197

GenotypeDepth
all individuals: 199
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1786
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2398
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2973
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 167
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1025
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 388
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 271
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3014
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 976
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3616
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.313370107696349e-4
allele num: 7614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.73551e5

MQRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

VQSLOD
type: SiteQuality
SIO_000300: -1.487e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.41e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.532e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.74e-1

QD
type: SiteQuality
SIO_000300: 1.713e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.-56-5492C>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473346
ensembl transcript: ENST00000602738
gene symbol: ZNF177
hgvsc: ENST00000602738.1:c.-479-5492C>G
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468299
ensembl transcript: ENST00000592298
gene symbol: ZNF559
hgvsc: ENST00000592298.1:c.-119-4794C>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000325393
ensembl transcript: ENST00000317221
gene symbol: ZNF559
hgvsc: ENST00000317221.7:c.-126-4794C>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474716
ensembl transcript: ENST00000604543
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604543.1:c.118-13C>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.-374-13C>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+8222C>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474602
ensembl transcript: ENST00000603656
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603656.1:c.-249+8222C>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000465787
ensembl transcript: ENST00000586255
gene symbol: ZNF559
hgvsc: ENST00000586255.1:c.-194-4794C>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466496
ensembl transcript: ENST00000592896
gene symbol: ZNF559
hgvsc: ENST00000592896.1:c.-194-4794C>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474076
ensembl transcript: ENST00000605071
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605071.1:c.-56-5492C>G
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2156
bin: 2.5e0
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 73
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1881
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.039e3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.138e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 7.76e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000465787
ensembl transcript: ENST00000586255
gene symbol: ZNF559
hgvsc: ENST00000586255.1:c.-194-4787G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467841
ensembl transcript: ENST00000592504
gene symbol: ZNF559
hgvsc: ENST00000592504.1:c.-119-4787G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473974
ensembl transcript: ENST00000605006
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605006.1:c.118+8229G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474260
ensembl transcript: ENST00000589208
gene symbol: ZNF559
hgvsc: ENST00000589208.1:c.-80-8093G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+8229G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.137-8093G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466496
ensembl transcript: ENST00000592896
gene symbol: ZNF559
hgvsc: ENST00000592896.1:c.-194-4787G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473272
ensembl transcript: ENST00000602856
gene symbol: ZNF177
hgvsc: ENST00000602856.1:c.-392+8229G>A
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474602
ensembl transcript: ENST00000603656
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603656.1:c.-249+8229G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474354
ensembl transcript: ENST00000605775
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605775.1:c.136+8229G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474076
ensembl transcript: ENST00000605071
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605071.1:c.-56-5485G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000465526
ensembl transcript: ENST00000585377
gene symbol: ZNF559
hgvsc: ENST00000585377.1:c.-194-4787G>A
variant of: http://identifiers.org/hgnc/28197

GenotypeDepth
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2144
bin: 2.5e0
variant carriers: 1

GenotypeDepth
all individuals: 74
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1886
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.317e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.231e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 5.058e3

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.072e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468153
ensembl transcript: ENST00000587557
gene symbol: ZNF559
hgvsc: ENST00000587557.1:c.137-5391T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000465787
ensembl transcript: ENST00000586255
gene symbol: ZNF559
hgvsc: ENST00000586255.1:c.-194-4693T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474354
ensembl transcript: ENST00000605775
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605775.1:c.136+8323T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+8323T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473911
ensembl transcript: ENST00000603974
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603974.1:c.-119-4693T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.137-7999T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+8323T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000465526
ensembl transcript: ENST00000585377
gene symbol: ZNF559
hgvsc: ENST00000585377.1:c.-194-4693T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473974
ensembl transcript: ENST00000605006
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605006.1:c.118+8323T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000445323
ensembl transcript: ENST00000541595
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000541595.2:c.-479-5391T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473968
ensembl transcript: ENST00000604886
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604886.1:c.136+8323T>C
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 81
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2082
bin: 2.5e0
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1843
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.106e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 7.068e0

MQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.078e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

QD
type: SiteQuality
SIO_000300: 1.386e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
type: SiteQuality
SIO_000300: 4.996e3

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474260
ensembl transcript: ENST00000589208
gene symbol: ZNF559
hgvsc: ENST00000589208.1:c.-80-3122G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.-56-514G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000442832
ensembl transcript: ENST00000538743
gene symbol: ZNF559
hgvsc: ENST00000538743.1:c.-80-3122G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.238-514G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473272
ensembl transcript: ENST00000602856
gene symbol: ZNF177
hgvsc: ENST00000602856.1:c.-392+13200G>A
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+13200G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+13200G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.137-3122G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605522
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605522.1:n.181+122G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473974
ensembl transcript: ENST00000605006
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605006.1:c.118+13200G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474108
ensembl transcript: ENST00000593242
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000593242.3:c.91+13200G>A
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 203
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 860
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 525
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 117
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 852
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 103
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 225
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 148
bin: 6.75e1
variant carriers: 2

GenotypeDepth
all individuals: 996
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 580
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2350
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 953
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 52
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 103
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 342
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3803
bin: 9.75e1
variant carriers: 7

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 7.874015748031496e-4
allele num: 7620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.757859900717044e-4
allele num: 3626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.129e0

MQRankSum
type: SiteQuality
SIO_000300: 3.45e-1

QD
type: SiteQuality
SIO_000300: 1.074e1

VQSLOD
type: SiteQuality
SIO_000300: 1.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.96e-2

FS
type: SiteQuality
SIO_000300: 2.609e0

DP
type: SiteQuality
SIO_000300: 2.84015e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.15e-1

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000465526
ensembl transcript: ENST00000585377
gene symbol: ZNF559
hgvsc: ENST00000585377.1:c.15T>G
hgvsp: ENST00000585377.1:c.15T>G(p.%3D)
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000325393
ensembl transcript: ENST00000317221
gene symbol: ZNF559
hgvsc: ENST00000317221.7:c.-57+139T>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000445323
ensembl transcript: ENST00000541595
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000541595.2:c.-479-490T>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474108
ensembl transcript: ENST00000593242
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000593242.3:c.91+13224T>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474076
ensembl transcript: ENST00000605071
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605071.1:c.-56-490T>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473346
ensembl transcript: ENST00000602738
gene symbol: ZNF177
hgvsc: ENST00000602738.1:c.-479-490T>G
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474354
ensembl transcript: ENST00000605775
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605775.1:c.136+13224T>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605471
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605471.1:n.144+7815T>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468299
ensembl transcript: ENST00000592298
gene symbol: ZNF559
hgvsc: ENST00000592298.1:c.-57+146T>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.137-3098T>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.-56-490T>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474260
ensembl transcript: ENST00000589208
gene symbol: ZNF559
hgvsc: ENST00000589208.1:c.-80-3098T>G
variant of: http://identifiers.org/hgnc/28197

GenotypeDepth
all individuals: 76
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 995
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 864
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 342
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 853
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 202
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 146
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2253
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 52
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 581
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 953
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 525
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3800
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 233
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1995
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.759381898454746e-4
allele num: 3624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.08e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e0

VQSLOD
type: SiteQuality
SIO_000300: -3.923e-1

FS
type: SiteQuality
SIO_000300: 5.912e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.91e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.493e0

DP
type: SiteQuality
SIO_000300: 2.8367e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e0

QD
type: SiteQuality
SIO_000300: 1.096e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000442832
ensembl transcript: ENST00000538743
gene symbol: ZNF559
hgvsc: ENST00000538743.1:c.-80-3084G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473974
ensembl transcript: ENST00000605006
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605006.1:c.118+13238G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474260
ensembl transcript: ENST00000589208
gene symbol: ZNF559
hgvsc: ENST00000589208.1:c.-80-3084G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+13238G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473911
ensembl transcript: ENST00000603974
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603974.1:c.-57+160G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+13238G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474719
ensembl transcript: ENST00000605750
gene symbol: ZNF559
hgvsc: ENST00000605750.1:c.119-3084G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473346
ensembl transcript: ENST00000602738
gene symbol: ZNF177
hgvsc: ENST00000602738.1:c.-479-476G>A
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000377461
ensembl transcript: ENST00000393883
gene symbol: ZNF559
hgvsc: ENST00000393883.2:c.-57+160G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.238-476G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.137-3084G>A
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 2289
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 343
bin: 5.75e1
variant carriers: 2

GenotypeDepth
all individuals: 118
bin: 7.25e1
variant carriers: 2

GenotypeDepth
all individuals: 107
bin: 9.75e1
variant carriers: 5

GenotypeDepth
all individuals: 522
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 194
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 850
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 860
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 53
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 994
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 92
bin: 7.75e1
variant carriers: 5

GenotypeDepth
all individuals: 147
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 950
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 580
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 228
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3812
bin: 9.75e1
variant carriers: 25

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1988
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 24
allele frequency: 3.149606299212598e-3
allele num: 7620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.759381898454746e-4
allele num: 3624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.14e-2

FS
type: SiteQuality
SIO_000300: 1.124e0

QD
type: SiteQuality
SIO_000300: 1.044e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.898e0

DP
type: SiteQuality
SIO_000300: 2.84441e5

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468153
ensembl transcript: ENST00000587557
gene symbol: ZNF559
hgvsc: ENST00000587557.1:c.137-468G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.28+9G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468299
ensembl transcript: ENST00000592298
gene symbol: ZNF559
hgvsc: ENST00000592298.1:c.-57+168G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000445323
ensembl transcript: ENST00000541595
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000541595.2:c.-479-468G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605522
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605522.1:n.181+168G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+13246G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605301
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605301.1:n.340+9G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474716
ensembl transcript: ENST00000604543
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604543.1:c.*17-3076G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473346
ensembl transcript: ENST00000602738
gene symbol: ZNF177
hgvsc: ENST00000602738.1:c.-479-468G>A
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.-56-468G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473968
ensembl transcript: ENST00000604886
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604886.1:c.136+13246G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+13246G>A
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 867
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 524
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 951
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 995
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 583
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 52
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 194
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2319
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 342
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 146
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 852
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3797
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1996
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312335958005249e-4
allele num: 7620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3622
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.119999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.06e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.019e0

DP
type: SiteQuality
SIO_000300: 2.83702e5

MQRankSum
type: SiteQuality
SIO_000300: -5.83e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-1

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473911
ensembl transcript: ENST00000603974
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603974.1:c.-57+172T>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605301
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605301.1:n.340+13T>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.137-3072T>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474719
ensembl transcript: ENST00000605750
gene symbol: ZNF559
hgvsc: ENST00000605750.1:c.119-3072T>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474076
ensembl transcript: ENST00000605071
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605071.1:c.-56-464T>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000465526
ensembl transcript: ENST00000585377
gene symbol: ZNF559
hgvsc: ENST00000585377.1:c.28+13T>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468299
ensembl transcript: ENST00000592298
gene symbol: ZNF559
hgvsc: ENST00000592298.1:c.-57+172T>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.28+13T>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473968
ensembl transcript: ENST00000604886
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604886.1:c.136+13250T>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+13250T>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474108
ensembl transcript: ENST00000593242
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000593242.3:c.91+13250T>G
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 852
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 583
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2341
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 193
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 146
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 342
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 951
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 524
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 867
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 995
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 53
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 236
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1981
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3797
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 5.050505050505051e-3
allele num: 198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.24e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.42e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

FS
type: SiteQuality
SIO_000300: 1.95e0

VQSLOD
type: SiteQuality
SIO_000300: -5.763e-1

QD
type: SiteQuality
SIO_000300: 8.26e0

DP
type: SiteQuality
SIO_000300: 2.8374e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474760
ensembl transcript: ENST00000603380
gene symbol: ZNF559
hgvsc: ENST00000603380.1:c.-56-449A>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473974
ensembl transcript: ENST00000605006
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605006.1:c.118+13265A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473346
ensembl transcript: ENST00000602738
gene symbol: ZNF177
hgvsc: ENST00000602738.1:c.-479-449A>G
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+13265A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466496
ensembl transcript: ENST00000592896
gene symbol: ZNF559
hgvsc: ENST00000592896.1:c.28+28A>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.238-449A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468153
ensembl transcript: ENST00000587557
gene symbol: ZNF559
hgvsc: ENST00000587557.1:c.137-449A>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474108
ensembl transcript: ENST00000593242
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000593242.3:c.91+13265A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468299
ensembl transcript: ENST00000592298
gene symbol: ZNF559
hgvsc: ENST00000592298.1:c.-57+187A>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+13265A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.28+28A>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000445323
ensembl transcript: ENST00000541595
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000541595.2:c.-479-449A>G
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 87
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 122
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 118
bin: 7.25e1
variant carriers: 2

GenotypeDepth
all individuals: 342
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 8.25e1
variant carriers: 4

GenotypeDepth
all individuals: 512
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 951
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 52
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 866
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 221
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 583
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 993
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 850
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2461
bin: 2.5e0
variant carriers: 3

GenotypeDepth
all individuals: 42
bin: 9.25e1
variant carriers: 3

GenotypeDepth
all individuals: 107
bin: 9.75e1
variant carriers: 6

GenotypeDepth
all individuals: 146
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 178
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1964
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 314
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3797
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 3.214285714285714e-2
allele num: 560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.74e-2

DP
type: SiteQuality
SIO_000300: 2.84246e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

QD
type: SiteQuality
SIO_000300: 1.38e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.28e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474760
ensembl transcript: ENST00000603380
gene symbol: ZNF559
hgvsc: ENST00000603380.1:c.-56-448C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.28+29C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473968
ensembl transcript: ENST00000604886
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604886.1:c.136+13266C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.-56-448C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000445323
ensembl transcript: ENST00000541595
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000541595.2:c.-479-448C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+13266C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474076
ensembl transcript: ENST00000605071
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605071.1:c.-56-448C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+13266C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473272
ensembl transcript: ENST00000602856
gene symbol: ZNF177
hgvsc: ENST00000602856.1:c.-392+13266C>T
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473911
ensembl transcript: ENST00000603974
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603974.1:c.-57+188C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605301
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605301.1:n.340+29C>T
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 995
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2482
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 866
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 73
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 512
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 343
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 851
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 177
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 951
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 147
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 124
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 86
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 586
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 41
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 118
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 52
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3796
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.319148936170213e-3
allele num: 188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.571428571428571e-3
allele num: 560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3622
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.361e1

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.43e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.708e0

FS
type: SiteQuality
SIO_000300: 5.71e-1

DP
type: SiteQuality
SIO_000300: 2.84027e5

MQ
type: SiteQuality
SIO_000300: 5.984e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466496
ensembl transcript: ENST00000592896
gene symbol: ZNF559
hgvsc: ENST00000592896.1:c.29-48G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468299
ensembl transcript: ENST00000592298
gene symbol: ZNF559
hgvsc: ENST00000592298.1:c.-56-48G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.238-48G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.29-48G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474760
ensembl transcript: ENST00000603380
gene symbol: ZNF559
hgvsc: ENST00000603380.1:c.-56-48G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.137-2656G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.-56-48G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473911
ensembl transcript: ENST00000603974
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603974.1:c.-56-48G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+13666G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000325393
ensembl transcript: ENST00000317221
gene symbol: ZNF559
hgvsc: ENST00000317221.7:c.-56-48G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468153
ensembl transcript: ENST00000587557
gene symbol: ZNF559
hgvsc: ENST00000587557.1:c.137-48G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474719
ensembl transcript: ENST00000605750
gene symbol: ZNF559
hgvsc: ENST00000605750.1:c.119-2656G>A
variant of: http://identifiers.org/hgnc/28197

GenotypeDepth
all individuals: 279
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1254
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10376
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 377
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 496
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 639
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1520
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 924
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 148
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18954
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1467
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2911
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6791
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13617
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 153
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1168
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8633
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3308
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8314
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4469
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4528
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7411
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1963
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2441
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4747
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5058
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3296
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13944
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.800000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.188992e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.299999999999999e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474076
ensembl transcript: ENST00000605071
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605071.1:c.-56-42A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466496
ensembl transcript: ENST00000592896
gene symbol: ZNF559
hgvsc: ENST00000592896.1:c.29-42A>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.-56-42A>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474716
ensembl transcript: ENST00000604543
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604543.1:c.*17-2650A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473272
ensembl transcript: ENST00000602856
gene symbol: ZNF177
hgvsc: ENST00000602856.1:c.-392+13672A>G
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605301
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605301.1:n.341-42A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474354
ensembl transcript: ENST00000605775
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605775.1:c.136+13672A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.29-42A>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473968
ensembl transcript: ENST00000604886
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604886.1:c.136+13672A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000445323
ensembl transcript: ENST00000541595
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000541595.2:c.-479-42A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+13672A>G
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 148
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 204
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 935
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 639
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9471
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 153
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 377
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1582
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 495
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10996
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 18806
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1328
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 10364
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 279
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1254
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3087
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3179
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4688
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7275
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2075
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4113
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1488
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8044
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4528
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 10113
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8291
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14018
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.260397830018083e-4
allele num: 8848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52060
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.3e-2

QD
type: SiteQuality
SIO_000300: 1.877e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 1.207054e6

VQSLOD
type: SiteQuality
SIO_000300: -6.904e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.238-33C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468153
ensembl transcript: ENST00000587557
gene symbol: ZNF559
hgvsc: ENST00000587557.1:c.137-33C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.137-2641C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474108
ensembl transcript: ENST00000593242
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000593242.3:c.91+13681C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473968
ensembl transcript: ENST00000604886
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604886.1:c.136+13681C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466496
ensembl transcript: ENST00000592896
gene symbol: ZNF559
hgvsc: ENST00000592896.1:c.29-33C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.29-33C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000445323
ensembl transcript: ENST00000541595
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000541595.2:c.-479-33C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000325393
ensembl transcript: ENST00000317221
gene symbol: ZNF559
hgvsc: ENST00000317221.7:c.-56-33C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605471
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605471.1:n.144+8272C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+13681C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473346
ensembl transcript: ENST00000602738
gene symbol: ZNF177
hgvsc: ENST00000602738.1:c.-479-33C>T
variant of: http://identifiers.org/hgnc/12966

GenotypeDepth
all individuals: 378
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1854
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15931
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 825
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3940
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6320
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 161
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16472
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10270
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 641
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 279
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 500
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 961
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 153
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1254
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 148
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10779
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4549
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2634
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4323
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14365
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7519
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5703
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8956
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.8910741301059e-5
allele num: 52880
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5932
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6682
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.35e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.731e0

QD
type: SiteQuality
SIO_000300: 2.982e1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.032e0

DP
type: SiteQuality
SIO_000300: 1.270451e6

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473911
ensembl transcript: ENST00000603974
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603974.1:c.-56-26C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468153
ensembl transcript: ENST00000587557
gene symbol: ZNF559
hgvsc: ENST00000587557.1:c.137-26C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474260
ensembl transcript: ENST00000589208
gene symbol: ZNF559
hgvsc: ENST00000589208.1:c.-80-2634C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+13688C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.-56-26C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.29-26C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474076
ensembl transcript: ENST00000605071
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605071.1:c.-56-26C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000325393
ensembl transcript: ENST00000317221
gene symbol: ZNF559
hgvsc: ENST00000317221.7:c.-56-26C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468299
ensembl transcript: ENST00000592298
gene symbol: ZNF559
hgvsc: ENST00000592298.1:c.-56-26C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.238-26C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474108
ensembl transcript: ENST00000593242
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000593242.3:c.91+13688C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474719
ensembl transcript: ENST00000605750
gene symbol: ZNF559
hgvsc: ENST00000605750.1:c.119-2634C>T
variant of: http://identifiers.org/hgnc/28197

GenotypeDepth
all individuals: 982
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9480
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 447
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 378
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3411
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22887
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 280
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 656
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5256
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2125
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11982
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 498
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1254
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 148
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 153
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 162
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21515
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3522
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10188
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5596
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1491
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4579
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1056
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3425
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3497
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6930
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9104
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.912760956726116e-5
allele num: 14466
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.552e0

DP
type: SiteQuality
SIO_000300: 1.357977e6

VQSLOD
type: SiteQuality
SIO_000300: -1.778e0

MQRankSum
type: SiteQuality
SIO_000300: -4.05e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473968
ensembl transcript: ENST00000604886
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604886.1:c.136+13690delC
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.-56-24delC
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605471
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605471.1:n.144+8281delC
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.137-2632delC
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474716
ensembl transcript: ENST00000604543
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604543.1:c.*17-2632delC
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466496
ensembl transcript: ENST00000592896
gene symbol: ZNF559
hgvsc: ENST00000592896.1:c.29-24delC
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.238-24delC
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473346
ensembl transcript: ENST00000602738
gene symbol: ZNF177
hgvsc: ENST00000602738.1:c.-479-24delC
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000377461
ensembl transcript: ENST00000393883
gene symbol: ZNF559
hgvsc: ENST00000393883.2:c.-56-24delC
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000442832
ensembl transcript: ENST00000538743
gene symbol: ZNF559
hgvsc: ENST00000538743.1:c.-80-2632delC
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.29-24delC
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474760
ensembl transcript: ENST00000603380
gene symbol: ZNF559
hgvsc: ENST00000603380.1:c.-56-24delC
variant of: http://identifiers.org/hgnc/28197

GenotypeDepth
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 148
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 153
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 378
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 498
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1254
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3100
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 981
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2168
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 9297
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 409
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5421
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23923
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 203
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 659
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11269
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 280
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 162
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5302
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9999
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22318
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3188
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3240
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3675
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4583
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 429
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6986
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.828420975645433e-5
allele num: 54692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.094810597766586e-4
allele num: 9134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6034
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.517e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

FS
type: SiteQuality
SIO_000300: 5.408e0

VQSLOD
type: SiteQuality
SIO_000300: -8.554e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.52e-1

QD
type: SiteQuality
SIO_000300: 2.457e1

MQRankSum
type: SiteQuality
SIO_000300: -3.865e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.01e-1

DP
type: SiteQuality
SIO_000300: 1.371152e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000465526
ensembl transcript: ENST00000585377
gene symbol: ZNF559
hgvsc: ENST00000585377.1:c.29-22delG
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467841
ensembl transcript: ENST00000592504
gene symbol: ZNF559
hgvsc: ENST00000592504.1:c.-56-22delG
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468153
ensembl transcript: ENST00000587557
gene symbol: ZNF559
hgvsc: ENST00000587557.1:c.137-22delG
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474716
ensembl transcript: ENST00000604543
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604543.1:c.*17-2630delG
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.29-22delG
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000465787
ensembl transcript: ENST00000586255
gene symbol: ZNF559
hgvsc: ENST00000586255.1:c.29-22delG
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474108
ensembl transcript: ENST00000593242
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000593242.3:c.91+13692delG
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000377461
ensembl transcript: ENST00000393883
gene symbol: ZNF559
hgvsc: ENST00000393883.2:c.-56-22delG
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605522
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605522.1:n.182-22delG
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.-56-22delG
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000325393
ensembl transcript: ENST00000317221
gene symbol: ZNF559
hgvsc: ENST00000317221.7:c.-56-22delG
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.137-2630delG
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 989
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2318
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 499
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8760
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 298
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2359
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 661
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5924
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9435
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 148
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 378
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 153
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 26484
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1254
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 162
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 280
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25081
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4426
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2498
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9404
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3959
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1667
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4594
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 527
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2823
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.802386359540031e-5
allele num: 55482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6076
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7080
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.083423618634886e-4
allele num: 9230
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.068e0

FS
type: SiteQuality
SIO_000300: 2.589e0

MQ
type: SiteQuality
SIO_000300: 5.884e1

QD
type: SiteQuality
SIO_000300: 2.502e1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.002e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

DP
type: SiteQuality
SIO_000300: 1.406986e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473272
ensembl transcript: ENST00000602856
gene symbol: ZNF177
hgvsc: ENST00000602856.1:c.-392+13693A>G
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000445323
ensembl transcript: ENST00000541595
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000541595.2:c.-479-21A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.137-2629A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+13693A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.-56-21A>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.238-21A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605522
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605522.1:n.182-21A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473346
ensembl transcript: ENST00000602738
gene symbol: ZNF177
hgvsc: ENST00000602738.1:c.-479-21A>G
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474076
ensembl transcript: ENST00000605071
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605071.1:c.-56-21A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467841
ensembl transcript: ENST00000592504
gene symbol: ZNF559
hgvsc: ENST00000592504.1:c.-56-21A>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474602
ensembl transcript: ENST00000603656
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603656.1:c.-249+13693A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474760
ensembl transcript: ENST00000603380
gene symbol: ZNF559
hgvsc: ENST00000603380.1:c.-56-21A>G
variant of: http://identifiers.org/hgnc/28197

GenotypeDepth
all individuals: 10196
bin: 2.75e1
variant carriers: 8858

GenotypeDepth
all individuals: 2084
bin: 9.75e1
variant carriers: 1922

GenotypeDepth
all individuals: 86
bin: 2.5e0
variant carriers: 28

GenotypeDepth
all individuals: 324
bin: 6.75e1
variant carriers: 296

GenotypeDepth
all individuals: 814
bin: 5.25e1
variant carriers: 754

GenotypeDepth
all individuals: 647
bin: 5.75e1
variant carriers: 601

GenotypeDepth
all individuals: 2062
bin: 4.25e1
variant carriers: 1934

GenotypeDepth
all individuals: 502
bin: 6.25e1
variant carriers: 470

GenotypeDepth
all individuals: 3623
bin: 3.75e1
variant carriers: 3421

GenotypeDepth
all individuals: 15653
bin: 2.25e1
variant carriers: 10452

GenotypeDepth
all individuals: 6339
bin: 3.25e1
variant carriers: 5748

GenotypeDepth
all individuals: 2367
bin: 7.5e0
variant carriers: 760

GenotypeDepth
all individuals: 197
bin: 7.75e1
variant carriers: 169

GenotypeDepth
all individuals: 5163
bin: 1.25e1
variant carriers: 3628

GenotypeDepth
all individuals: 8682
bin: 1.75e1
variant carriers: 8208

GenotypeDepth
all individuals: 1261
bin: 4.75e1
variant carriers: 1175

GenotypeDepth
all individuals: 134
bin: 8.75e1
variant carriers: 117

GenotypeDepth
all individuals: 160
bin: 8.25e1
variant carriers: 142

GenotypeDepth
all individuals: 259
bin: 7.25e1
variant carriers: 231

GenotypeDepth
all individuals: 121
bin: 9.25e1
variant carriers: 99

GenotypeQuality
all individuals: 2300
bin: 6.75e1
variant carriers: 1645

GenotypeQuality
all individuals: 1049
bin: 5.75e1
variant carriers: 904

GenotypeQuality
all individuals: 191
bin: 7.5e0
variant carriers: 81

GenotypeQuality
all individuals: 1751
bin: 7.75e1
variant carriers: 1511

GenotypeQuality
all individuals: 779
bin: 2.75e1
variant carriers: 272

GenotypeQuality
all individuals: 293
bin: 1.75e1
variant carriers: 183

GenotypeQuality
all individuals: 2004
bin: 2.25e1
variant carriers: 280

GenotypeQuality
all individuals: 1053
bin: 7.25e1
variant carriers: 860

GenotypeQuality
all individuals: 186
bin: 1.25e1
variant carriers: 108

GenotypeQuality
all individuals: 1180
bin: 3.75e1
variant carriers: 768

GenotypeQuality
all individuals: 34577
bin: 9.75e1
variant carriers: 33878

GenotypeQuality
all individuals: 1235
bin: 3.25e1
variant carriers: 496

GenotypeQuality
all individuals: 1147
bin: 9.25e1
variant carriers: 1072

GenotypeQuality
all individuals: 1576
bin: 8.25e1
variant carriers: 1405

GenotypeQuality
all individuals: 420
bin: 2.5e0
variant carriers: 78

GenotypeQuality
all individuals: 6459
bin: 6.25e1
variant carriers: 1624

GenotypeQuality
all individuals: 1325
bin: 4.75e1
variant carriers: 1125

GenotypeQuality
all individuals: 772
bin: 8.75e1
variant carriers: 703

GenotypeQuality
all individuals: 726
bin: 4.25e1
variant carriers: 551

GenotypeQuality
all individuals: 1651
bin: 5.25e1
variant carriers: 1469

East Asian
type: Population
allele count: 3351
allele frequency: 4.327221074380165e-1
allele num: 7744
num of homozygotes: 680

Other
type: Population
allele count: 462
allele frequency: 5.298165137614679e-1
allele num: 872
num of homozygotes: 126

Latino
type: Population
allele count: 5641
allele frequency: 5.221214365049982e-1
allele num: 10804
num of homozygotes: 1414

European (Non-Finnish)
type: Population
allele count: 38120
allele frequency: 6.056176919166243e-1
allele num: 62944
num of homozygotes: 11172

European (Finnish)
type: Population
allele count: 2888
allele frequency: 4.552332912988651e-1
allele num: 6344
num of homozygotes: 628

South Asian
type: Population
allele count: 9621
allele frequency: 6.009369144284822e-1
allele num: 16010
num of homozygotes: 2887

African
type: Population
allele count: 7370
allele frequency: 7.288370253164557e-1
allele num: 10112
num of homozygotes: 2654

ClippingRankSum
type: SiteQuality
SIO_000300: -2.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e-1

QD
type: SiteQuality
SIO_000300: 2.488e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.41e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.08e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

DP
type: SiteQuality
SIO_000300: 1.868714e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000465526
ensembl transcript: ENST00000585377
gene symbol: ZNF559
hgvsc: ENST00000585377.1:c.29-20_29-19insAAAA
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474076
ensembl transcript: ENST00000605071
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605071.1:c.-56-20_-56-19insAAAA
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605471
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605471.1:n.144+8285_144+8286insAAAA
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.-56-20_-56-19insAAAA
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466496
ensembl transcript: ENST00000592896
gene symbol: ZNF559
hgvsc: ENST00000592896.1:c.29-20_29-19insAAAA
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000325393
ensembl transcript: ENST00000317221
gene symbol: ZNF559
hgvsc: ENST00000317221.7:c.-56-20_-56-19insAAAA
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+13694_-392+13695insAAAA
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474716
ensembl transcript: ENST00000604543
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604543.1:c.*17-2628_*17-2627insAAAA
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000465787
ensembl transcript: ENST00000586255
gene symbol: ZNF559
hgvsc: ENST00000586255.1:c.29-20_29-19insAAAA
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473911
ensembl transcript: ENST00000603974
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603974.1:c.-56-20_-56-19insAAAA
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.29-20_29-19insAAAA
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468299
ensembl transcript: ENST00000592298
gene symbol: ZNF559
hgvsc: ENST00000592298.1:c.-56-20_-56-19insAAAA
variant of: http://identifiers.org/hgnc/28197

GenotypeDepth
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1532
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6565
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12217
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 602
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4824
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2884
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2229
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 162
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 493
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 736
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2104
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 265
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8194
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 96
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 16020
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 197
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1015
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3353
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3714
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2077
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3590
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2521
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2422
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6114
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8979
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2496
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1474
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2598
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15144
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.858044164037855e-5
allele num: 10144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7932
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.565386180770796e-5
allele num: 63882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11088
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16072
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.869e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.58e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.4e0

FS
type: SiteQuality
SIO_000300: 2.093e0

MQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

QD
type: SiteQuality
SIO_000300: 1.785e1

DP
type: SiteQuality
SIO_000300: 1.86073e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466496
ensembl transcript: ENST00000592896
gene symbol: ZNF559
hgvsc: ENST00000592896.1:c.29-18T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+13696T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000442832
ensembl transcript: ENST00000538743
gene symbol: ZNF559
hgvsc: ENST00000538743.1:c.-80-2626T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474719
ensembl transcript: ENST00000605750
gene symbol: ZNF559
hgvsc: ENST00000605750.1:c.119-2626T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000325393
ensembl transcript: ENST00000317221
gene symbol: ZNF559
hgvsc: ENST00000317221.7:c.-56-18T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474602
ensembl transcript: ENST00000603656
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603656.1:c.-249+13696T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+13696T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.29-18T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000465787
ensembl transcript: ENST00000586255
gene symbol: ZNF559
hgvsc: ENST00000586255.1:c.29-18T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.-56-18T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.137-2626T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474076
ensembl transcript: ENST00000605071
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605071.1:c.-56-18T>C
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 321
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1013
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7621
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6596
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2104
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2883
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 4649
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 197
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 265
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12297
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 737
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1533
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 602
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2122
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 162
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16774
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 493
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2624
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2462
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1557
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2532
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8977
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 16678
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3259
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2339
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1072
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2008
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3268
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1204
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3620
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6238
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.825112988799372e-5
allele num: 10178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559575795383656e-5
allele num: 64120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16106
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7992
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.532e0

MQRankSum
type: SiteQuality
SIO_000300: -4.062e0

DP
type: SiteQuality
SIO_000300: 1.867302e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e0

MQ
type: SiteQuality
SIO_000300: 4.517e1

VQSLOD
type: SiteQuality
SIO_000300: -2.334e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.51e-1

QD
type: SiteQuality
SIO_000300: 2.293e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.271e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000325393
ensembl transcript: ENST00000317221
gene symbol: ZNF559
hgvsc: ENST00000317221.7:c.-56-15T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474602
ensembl transcript: ENST00000603656
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603656.1:c.-249+13699T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605301
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605301.1:n.341-15T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467841
ensembl transcript: ENST00000592504
gene symbol: ZNF559
hgvsc: ENST00000592504.1:c.-56-15T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473272
ensembl transcript: ENST00000602856
gene symbol: ZNF177
hgvsc: ENST00000602856.1:c.-392+13699T>C
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000442832
ensembl transcript: ENST00000538743
gene symbol: ZNF559
hgvsc: ENST00000538743.1:c.-80-2623T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473911
ensembl transcript: ENST00000603974
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603974.1:c.-56-15T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000465526
ensembl transcript: ENST00000585377
gene symbol: ZNF559
hgvsc: ENST00000585377.1:c.29-15T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466496
ensembl transcript: ENST00000592896
gene symbol: ZNF559
hgvsc: ENST00000592896.1:c.29-15T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+13699T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.-56-15T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474719
ensembl transcript: ENST00000605750
gene symbol: ZNF559
hgvsc: ENST00000605750.1:c.119-2623T>C
variant of: http://identifiers.org/hgnc/28197

GenotypeDepth
all individuals: 321
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12524
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6691
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2886
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6141
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18398
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 604
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 196
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4368
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1533
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1947
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 735
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 265
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2104
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1014
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 493
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8989
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1493
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6357
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2541
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2209
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3612
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2779
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2633
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1493
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1862
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2346
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1941
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19410
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.110516656816698e-5
allele num: 64298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8046
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16134
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11190
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.953e0

QD
type: SiteQuality
SIO_000300: 1.528e1

MQ
type: SiteQuality
SIO_000300: 5.798e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.19e-1

DP
type: SiteQuality
SIO_000300: 1.881224e6

VQSLOD
type: SiteQuality
SIO_000300: 3.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.238-6_238-4delCTT
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467841
ensembl transcript: ENST00000592504
gene symbol: ZNF559
hgvsc: ENST00000592504.1:c.-56-6_-56-4delCTT
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.137-2614_137-2612delCTT
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474108
ensembl transcript: ENST00000593242
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000593242.3:c.91+13708_91+13710delCTT
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466496
ensembl transcript: ENST00000592896
gene symbol: ZNF559
hgvsc: ENST00000592896.1:c.29-6_29-4delCTT
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605471
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605471.1:n.144+8299_144+8301delCTT
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000465526
ensembl transcript: ENST00000585377
gene symbol: ZNF559
hgvsc: ENST00000585377.1:c.29-6_29-4delCTT
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474354
ensembl transcript: ENST00000605775
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605775.1:c.136+13708_136+13710delCTT
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474602
ensembl transcript: ENST00000603656
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603656.1:c.-249+13708_-249+13710delCTT
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468153
ensembl transcript: ENST00000587557
gene symbol: ZNF559
hgvsc: ENST00000587557.1:c.137-6_137-4delCTT
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474260
ensembl transcript: ENST00000589208
gene symbol: ZNF559
hgvsc: ENST00000589208.1:c.-80-2614_-80-2612delCTT
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473346
ensembl transcript: ENST00000602738
gene symbol: ZNF177
hgvsc: ENST00000602738.1:c.-479-6_-479-4delCTT
variant of: http://identifiers.org/hgnc/12966

GenotypeDepth
all individuals: 6141
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6691
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2886
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18398
bin: 2.25e1
variant carriers: 2

GenotypeDepth
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 735
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 493
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 196
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12524
bin: 2.75e1
variant carriers: 2

GenotypeDepth
all individuals: 4368
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 604
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1014
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2104
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1947
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1533
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 265
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19410
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1493
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2633
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1493
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1941
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1862
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3612
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2346
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6357
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8989
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2209
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2541
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2779
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.110516656816698e-5
allele num: 64298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.239618197595141e-4
allele num: 16134
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8046
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11190
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.138952164009112e-3
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.798e1

VQSLOD
type: SiteQuality
SIO_000300: 3.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

QD
type: SiteQuality
SIO_000300: 1.528e1

DP
type: SiteQuality
SIO_000300: 1.881224e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

FS
type: SiteQuality
SIO_000300: 1.953e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.19e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468299
ensembl transcript: ENST00000592298
gene symbol: ZNF559
hgvsc: ENST00000592298.1:c.-56-10T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474760
ensembl transcript: ENST00000603380
gene symbol: ZNF559
hgvsc: ENST00000603380.1:c.-56-10T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.29-10T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468153
ensembl transcript: ENST00000587557
gene symbol: ZNF559
hgvsc: ENST00000587557.1:c.137-10T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000445323
ensembl transcript: ENST00000541595
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000541595.2:c.-479-10T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474716
ensembl transcript: ENST00000604543
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604543.1:c.*17-2618T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+13704T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000325393
ensembl transcript: ENST00000317221
gene symbol: ZNF559
hgvsc: ENST00000317221.7:c.-56-10T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473911
ensembl transcript: ENST00000603974
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603974.1:c.-56-10T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+13704T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.137-2618T>C
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 6826
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1637
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 21657
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1012
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 265
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12989
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 493
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 604
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2908
bin: 3.75e1
variant carriers: 2

GenotypeDepth
all individuals: 1535
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3313
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3653
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 736
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 196
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2104
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24051
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1504
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1575
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1091
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2663
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2595
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8988
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6575
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3678
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11290
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.233197681588359e-4
allele num: 16218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64646
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.03e-1

QD
type: SiteQuality
SIO_000300: 1.388e1

VQSLOD
type: SiteQuality
SIO_000300: 1.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.909584e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474716
ensembl transcript: ENST00000604543
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604543.1:c.*17-2614C>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.29-6C>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474260
ensembl transcript: ENST00000589208
gene symbol: ZNF559
hgvsc: ENST00000589208.1:c.-80-2614C>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474602
ensembl transcript: ENST00000603656
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603656.1:c.-249+13708C>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474760
ensembl transcript: ENST00000603380
gene symbol: ZNF559
hgvsc: ENST00000603380.1:c.-56-6C>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473272
ensembl transcript: ENST00000602856
gene symbol: ZNF177
hgvsc: ENST00000602856.1:c.-392+13708C>G
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605301
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605301.1:n.341-6C>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474108
ensembl transcript: ENST00000593242
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000593242.3:c.91+13708C>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473968
ensembl transcript: ENST00000604886
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604886.1:c.136+13708C>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468299
ensembl transcript: ENST00000592298
gene symbol: ZNF559
hgvsc: ENST00000592298.1:c.-56-6C>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474354
ensembl transcript: ENST00000605775
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605775.1:c.136+13708C>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.238-6C>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: true
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000445323
ensembl transcript: ENST00000541595
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000541595.2:c.-479-6C>G
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 1012
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2602
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 196
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1321
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 736
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13411
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 265
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2925
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7022
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1541
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 604
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1570
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 493
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24150
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2104
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2619
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27047
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8989
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1514
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1201
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3720
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1101
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6718
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2711
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1218
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537609939110646e-5
allele num: 65036
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11352
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.22e0

DP
type: SiteQuality
SIO_000300: 1.937182e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.532e1

MQ
type: SiteQuality
SIO_000300: 5.909e1

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.-56-5T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473968
ensembl transcript: ENST00000604886
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604886.1:c.136+13709T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+13709T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467841
ensembl transcript: ENST00000592504
gene symbol: ZNF559
hgvsc: ENST00000592504.1:c.-56-5T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473346
ensembl transcript: ENST00000602738
gene symbol: ZNF177
hgvsc: ENST00000602738.1:c.-479-5T>C
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474260
ensembl transcript: ENST00000589208
gene symbol: ZNF559
hgvsc: ENST00000589208.1:c.-80-2613T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474716
ensembl transcript: ENST00000604543
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604543.1:c.*17-2613T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.29-5T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000442832
ensembl transcript: ENST00000538743
gene symbol: ZNF559
hgvsc: ENST00000538743.1:c.-80-2613T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.137-2613T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473272
ensembl transcript: ENST00000602856
gene symbol: ZNF177
hgvsc: ENST00000602856.1:c.-392+13709T>C
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473974
ensembl transcript: ENST00000605006
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605006.1:c.118+13709T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474719
ensembl transcript: ENST00000605750
gene symbol: ZNF559
hgvsc: ENST00000605750.1:c.119-2613T>C
variant of: http://identifiers.org/hgnc/28197

GenotypeDepth
all individuals: 13485
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24812
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2104
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 265
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1012
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2262
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1538
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2922
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 737
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 604
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1226
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 493
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7048
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 196
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1253
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2735
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2639
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8992
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27881
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6804
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1525
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1070
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3746
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65170
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.952743604764694e-4
allele num: 10242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16316
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.222e1

MQRankSum
type: SiteQuality
SIO_000300: -8.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-2

MQ
type: SiteQuality
SIO_000300: 5.951e1

DP
type: SiteQuality
SIO_000300: 1.943814e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.07e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.24e-1

FS
type: SiteQuality
SIO_000300: 1.3503e1

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466496
ensembl transcript: ENST00000592896
gene symbol: ZNF559
hgvsc: ENST00000592896.1:c.29-3A>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474108
ensembl transcript: ENST00000593242
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000593242.3:c.91+13711A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473974
ensembl transcript: ENST00000605006
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605006.1:c.118+13711A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474602
ensembl transcript: ENST00000603656
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603656.1:c.-249+13711A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605471
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605471.1:n.144+8302A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473968
ensembl transcript: ENST00000604886
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604886.1:c.136+13711A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605301
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605301.1:n.341-3A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000465526
ensembl transcript: ENST00000585377
gene symbol: ZNF559
hgvsc: ENST00000585377.1:c.29-3A>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474260
ensembl transcript: ENST00000589208
gene symbol: ZNF559
hgvsc: ENST00000589208.1:c.-80-2611A>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473272
ensembl transcript: ENST00000602856
gene symbol: ZNF177
hgvsc: ENST00000602856.1:c.-392+13711A>G
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474076
ensembl transcript: ENST00000605071
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605071.1:c.-56-3A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474716
ensembl transcript: ENST00000604543
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604543.1:c.*17-2611A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473346
ensembl transcript: ENST00000602738
gene symbol: ZNF177
hgvsc: ENST00000602738.1:c.-479-3A>G
variant of: http://identifiers.org/hgnc/12966

GenotypeDepth
all individuals: 25676
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1760
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 758
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1546
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1071
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1012
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 196
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13664
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 605
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 738
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7150
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 321
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2927
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 265
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2104
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 493
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6861
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28937
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3747
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8995
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2638
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2745
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1525
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.904724716907458e-4
allele num: 10244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65386
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.22e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.479e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

DP
type: SiteQuality
SIO_000300: 1.955696e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e-1

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473974
ensembl transcript: ENST00000605006
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605006.1:c.118+13717_118+13719delATC
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474716
ensembl transcript: ENST00000604543
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604543.1:c.*17-2605_*17-2603delATC
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: inframe_deletion
consequence: splice_region_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000465787
ensembl transcript: ENST00000586255
gene symbol: ZNF559
hgvsc: ENST00000586255.1:c.32_34delATC
hgvsp: ENSP00000465787.2:p.His11del
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605471
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605471.1:n.144+8308_144+8310delATC
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: splice_region_variant
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000325393
ensembl transcript: ENST00000317221
gene symbol: ZNF559
hgvsc: ENST00000317221.7:c.-53_-51delATC
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474108
ensembl transcript: ENST00000593242
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000593242.3:c.91+13717_91+13719delATC
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+13717_-392+13719delATC
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473272
ensembl transcript: ENST00000602856
gene symbol: ZNF177
hgvsc: ENST00000602856.1:c.-392+13717_-392+13719delATC
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474260
ensembl transcript: ENST00000589208
gene symbol: ZNF559
hgvsc: ENST00000589208.1:c.-80-2605_-80-2603delATC
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474719
ensembl transcript: ENST00000605750
gene symbol: ZNF559
hgvsc: ENST00000605750.1:c.119-2605_119-2603delATC
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+13717_113+13719delATC
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.137-2605_137-2603delATC
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: splice_region_variant
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473346
ensembl transcript: ENST00000602738
gene symbol: ZNF177
hgvsc: ENST00000602738.1:c.-476_-474delATC
variant of: http://identifiers.org/hgnc/12966

GenotypeDepth
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1417
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25994
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13933
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 738
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1548
bin: 4.25e1
variant carriers: 2

GenotypeDepth
all individuals: 321
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 930
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 493
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7248
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 541
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1013
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 196
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2943
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 265
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2104
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 604
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6912
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29413
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9000
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3773
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1526
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2771
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2653
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.0517578125e-5
allele num: 65536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.96474e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

MQRankSum
type: SiteQuality
SIO_000300: -1.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

QD
type: SiteQuality
SIO_000300: 1.931e1

FS
type: SiteQuality
SIO_000300: 1.669e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQ
type: SiteQuality
SIO_000300: 5.517e1

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.-44A>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468299
ensembl transcript: ENST00000592298
gene symbol: ZNF559
hgvsc: ENST00000592298.1:c.-44A>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473974
ensembl transcript: ENST00000605006
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605006.1:c.118+13726A>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466496
ensembl transcript: ENST00000592896
gene symbol: ZNF559
hgvsc: ENST00000592896.1:c.41A>C
hgvsp: ENSP00000466496.2:p.Gln14Pro
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473968
ensembl transcript: ENST00000604886
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604886.1:c.136+13726A>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+13726A>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473272
ensembl transcript: ENST00000602856
gene symbol: ZNF177
hgvsc: ENST00000602856.1:c.-392+13726A>C
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000442832
ensembl transcript: ENST00000538743
gene symbol: ZNF559
hgvsc: ENST00000538743.1:c.-80-2596A>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467841
ensembl transcript: ENST00000592504
gene symbol: ZNF559
hgvsc: ENST00000592504.1:c.-44A>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474719
ensembl transcript: ENST00000605750
gene symbol: ZNF559
hgvsc: ENST00000605750.1:c.119-2596A>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474260
ensembl transcript: ENST00000589208
gene symbol: ZNF559
hgvsc: ENST00000589208.1:c.-80-2596A>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605301
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605301.1:n.353A>C
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 2961
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 278
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 265
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 303
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 493
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2105
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 738
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 195
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7411
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1017
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27279
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1544
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14702
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 604
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31682
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2837
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2691
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3858
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9008
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7148
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1534
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.659969088098918e-5
allele num: 10352
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66384
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.05e-1

QD
type: SiteQuality
SIO_000300: 1.377e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.057e0

DP
type: SiteQuality
SIO_000300: 1.993415e6

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.352e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.4089e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.04e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.266T>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473272
ensembl transcript: ENST00000602856
gene symbol: ZNF177
hgvsc: ENST00000602856.1:c.-392+13742T>A
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+13742T>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474354
ensembl transcript: ENST00000605775
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605775.1:c.136+13742T>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: true
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000377461
ensembl transcript: ENST00000393883
gene symbol: ZNF559
hgvsc: ENST00000393883.2:c.-28T>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605522
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605522.1:n.210T>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+13742T>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474602
ensembl transcript: ENST00000603656
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603656.1:c.-249+13742T>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474716
ensembl transcript: ENST00000604543
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604543.1:c.*17-2580T>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474108
ensembl transcript: ENST00000593242
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000593242.3:c.91+13742T>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.57T>A
hgvsp: ENST00000588124.1:c.57T>A(p.%3D)
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: true
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000445323
ensembl transcript: ENST00000541595
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000541595.2:c.-451T>A
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 7472
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 197
bin: 7.75e1
variant carriers: 2

GenotypeDepth
all individuals: 77
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14917
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 265
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27520
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 738
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1016
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1546
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 493
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 604
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2968
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 323
bin: 6.75e1
variant carriers: 2

GenotypeDepth
all individuals: 2108
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2690
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7200
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9016
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 32263
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3853
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1532
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.059118043520123e-3
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 3.97e-1

FS
type: SiteQuality
SIO_000300: 6.43e-1

DP
type: SiteQuality
SIO_000300: 2.002249e6

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.46e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.056e0

QD
type: SiteQuality
SIO_000300: 1.446e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.07e-1

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467841
ensembl transcript: ENST00000592504
gene symbol: ZNF559
hgvsc: ENST00000592504.1:c.-3A>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+13767A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605471
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605471.1:n.144+8358A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474716
ensembl transcript: ENST00000604543
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604543.1:c.*17-2555A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473346
ensembl transcript: ENST00000602738
gene symbol: ZNF177
hgvsc: ENST00000602738.1:c.-426A>G
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+13767A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: true
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000377461
ensembl transcript: ENST00000393883
gene symbol: ZNF559
hgvsc: ENST00000393883.2:c.-3A>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474602
ensembl transcript: ENST00000603656
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603656.1:c.-249+13767A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474719
ensembl transcript: ENST00000605750
gene symbol: ZNF559
hgvsc: ENST00000605750.1:c.119-2555A>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474354
ensembl transcript: ENST00000605775
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605775.1:c.136+13767A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474076
ensembl transcript: ENST00000605071
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605071.1:c.-3A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473272
ensembl transcript: ENST00000602856
gene symbol: ZNF177
hgvsc: ENST00000602856.1:c.-392+13767A>G
variant of: http://identifiers.org/hgnc/12966

GenotypeDepth
all individuals: 1016
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1548
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 604
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7486
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2971
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 265
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27483
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15029
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 737
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 492
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 195
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2108
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2851
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7221
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2696
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9013
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3863
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1531
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32338
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.673e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.75e0

MQRankSum
type: SiteQuality
SIO_000300: 4.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.129e0

DP
type: SiteQuality
SIO_000300: 2.003845e6

MQ
type: SiteQuality
SIO_000300: 5.829e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.171e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474260
ensembl transcript: ENST00000589208
gene symbol: ZNF559
hgvsc: ENST00000589208.1:c.-80-2554G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474602
ensembl transcript: ENST00000603656
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603656.1:c.-249+13768G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000465526
ensembl transcript: ENST00000585377
gene symbol: ZNF559
hgvsc: ENST00000585377.1:c.83G>A
hgvsp: ENSP00000465526.2:p.Arg28Lys
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605522
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605522.1:n.236G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474108
ensembl transcript: ENST00000593242
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000593242.3:c.91+13768G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000325393
ensembl transcript: ENST00000317221
gene symbol: ZNF559
hgvsc: ENST00000317221.7:c.-2G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474760
ensembl transcript: ENST00000603380
gene symbol: ZNF559
hgvsc: ENST00000603380.1:c.-2G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.292G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473272
ensembl transcript: ENST00000602856
gene symbol: ZNF177
hgvsc: ENST00000602856.1:c.-392+13768G>A
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474716
ensembl transcript: ENST00000604543
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604543.1:c.*17-2554G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474076
ensembl transcript: ENST00000605071
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605071.1:c.-2G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474354
ensembl transcript: ENST00000605775
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605775.1:c.136+13768G>A
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 15031
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 320
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2108
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 7488
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 195
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2970
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 492
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1016
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 265
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 737
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27481
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 604
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1548
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32342
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9012
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7223
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1531
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2850
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2697
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3864
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.340000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

QD
type: SiteQuality
SIO_000300: 1.354e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 2.003832e6

MQRankSum
type: SiteQuality
SIO_000300: -4.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.4G>T
hgvsp: ENSP00000467048.1:p.Val2Leu
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466496
ensembl transcript: ENST00000592896
gene symbol: ZNF559
hgvsc: ENST00000592896.1:c.88G>T
hgvsp: ENSP00000466496.2:p.Val30Leu
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473272
ensembl transcript: ENST00000602856
gene symbol: ZNF177
hgvsc: ENST00000602856.1:c.-392+13773G>T
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: true
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000445323
ensembl transcript: ENST00000541595
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000541595.2:c.-420G>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473346
ensembl transcript: ENST00000602738
gene symbol: ZNF177
hgvsc: ENST00000602738.1:c.-420G>T
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.297G>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605301
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605301.1:n.400G>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473974
ensembl transcript: ENST00000605006
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605006.1:c.118+13773G>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474760
ensembl transcript: ENST00000603380
gene symbol: ZNF559
hgvsc: ENST00000603380.1:c.4G>T
hgvsp: ENSP00000474760.1:p.Val2Leu
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467841
ensembl transcript: ENST00000592504
gene symbol: ZNF559
hgvsc: ENST00000592504.1:c.4G>T
hgvsp: ENSP00000467841.1:p.Val2Leu
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474260
ensembl transcript: ENST00000589208
gene symbol: ZNF559
hgvsc: ENST00000589208.1:c.-80-2549G>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+13773G>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474716
ensembl transcript: ENST00000604543
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604543.1:c.*17-2549G>T
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 7490
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 195
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27462
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 737
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 604
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 493
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2969
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15036
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1016
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2107
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 320
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1547
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9015
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2851
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32318
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2696
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3863
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1531
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7215
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49707690001499e-5
allele num: 66710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.159999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.253e1

MQRankSum
type: SiteQuality
SIO_000300: 8.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.529e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 4.654e0

DP
type: SiteQuality
SIO_000300: 2.003845e6

MQ
type: SiteQuality
SIO_000300: 5.904e1

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000465787
ensembl transcript: ENST00000586255
gene symbol: ZNF559
hgvsc: ENST00000586255.1:c.94G>A
hgvsp: ENSP00000465787.2:p.Gly32Arg
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+13779G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474260
ensembl transcript: ENST00000589208
gene symbol: ZNF559
hgvsc: ENST00000589208.1:c.-80-2543G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474716
ensembl transcript: ENST00000604543
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604543.1:c.*17-2543G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.137-2543G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474602
ensembl transcript: ENST00000603656
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603656.1:c.-249+13779G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473272
ensembl transcript: ENST00000602856
gene symbol: ZNF177
hgvsc: ENST00000602856.1:c.-392+13779G>A
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473974
ensembl transcript: ENST00000605006
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605006.1:c.118+13779G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474108
ensembl transcript: ENST00000593242
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000593242.3:c.91+13779G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605471
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605471.1:n.144+8370G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466496
ensembl transcript: ENST00000592896
gene symbol: ZNF559
hgvsc: ENST00000592896.1:c.94G>A
hgvsp: ENSP00000466496.2:p.Gly32Arg
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000325393
ensembl transcript: ENST00000317221
gene symbol: ZNF559
hgvsc: ENST00000317221.7:c.10G>A
hgvsp: ENSP00000325393.7:p.Gly4Arg
variant of: http://identifiers.org/hgnc/28197

GenotypeDepth
all individuals: 15033
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 128
bin: 9.25e1
variant carriers: 2

GenotypeDepth
all individuals: 125
bin: 8.75e1
variant carriers: 3

GenotypeDepth
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2123
bin: 9.75e1
variant carriers: 16

GenotypeDepth
all individuals: 7487
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 740
bin: 5.25e1
variant carriers: 3

GenotypeDepth
all individuals: 606
bin: 5.75e1
variant carriers: 2

GenotypeDepth
all individuals: 27430
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1018
bin: 4.75e1
variant carriers: 2

GenotypeDepth
all individuals: 1546
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 7.25e1
variant carriers: 2

GenotypeDepth
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2970
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 167
bin: 8.25e1
variant carriers: 4

GenotypeDepth
all individuals: 195
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 491
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 322
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 36
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3859
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32301
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9042
bin: 9.75e1
variant carriers: 38

GenotypeQuality
all individuals: 1530
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2695
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7208
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 30
allele frequency: 4.539951573849879e-3
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.049380865289479e-4
allele num: 66706
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.86e-1

DP
type: SiteQuality
SIO_000300: 2.006385e6

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.47e-1

QD
type: SiteQuality
SIO_000300: 1.258e1

VQSLOD
type: SiteQuality
SIO_000300: 5.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.051e0

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468299
ensembl transcript: ENST00000592298
gene symbol: ZNF559
hgvsc: ENST00000592298.1:c.17T>G
hgvsp: ENSP00000468299.1:p.Leu6Trp
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000465787
ensembl transcript: ENST00000586255
gene symbol: ZNF559
hgvsc: ENST00000586255.1:c.101T>G
hgvsp: ENSP00000465787.2:p.Leu34Trp
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: missense_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473911
ensembl transcript: ENST00000603974
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603974.1:c.17T>G
hgvsp: ENSP00000473911.1:p.Leu6Trp
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473968
ensembl transcript: ENST00000604886
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604886.1:c.136+13786T>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: true
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000445323
ensembl transcript: ENST00000541595
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000541595.2:c.-407T>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605522
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605522.1:n.254T>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474760
ensembl transcript: ENST00000603380
gene symbol: ZNF559
hgvsc: ENST00000603380.1:c.17T>G
hgvsp: ENSP00000474760.1:p.Leu6Trp
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+13786T>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474108
ensembl transcript: ENST00000593242
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000593242.3:c.91+13786T>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473974
ensembl transcript: ENST00000605006
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605006.1:c.118+13786T>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468153
ensembl transcript: ENST00000587557
gene symbol: ZNF559
hgvsc: ENST00000587557.1:c.209T>G
hgvsp: ENSP00000468153.2:p.Leu70Trp
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.310T>G
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 2967
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1550
bin: 4.25e1
variant carriers: 2

GenotypeDepth
all individuals: 331
bin: 6.75e1
variant carriers: 14

GenotypeDepth
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 204
bin: 7.75e1
variant carriers: 8

GenotypeDepth
all individuals: 1017
bin: 4.75e1
variant carriers: 6

GenotypeDepth
all individuals: 27357
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 606
bin: 5.75e1
variant carriers: 4

GenotypeDepth
all individuals: 740
bin: 5.25e1
variant carriers: 7

GenotypeDepth
all individuals: 174
bin: 8.25e1
variant carriers: 10

GenotypeDepth
all individuals: 7468
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2156
bin: 9.75e1
variant carriers: 63

GenotypeDepth
all individuals: 498
bin: 6.25e1
variant carriers: 7

GenotypeDepth
all individuals: 140
bin: 9.25e1
variant carriers: 13

GenotypeDepth
all individuals: 269
bin: 7.25e1
variant carriers: 5

GenotypeDepth
all individuals: 132
bin: 8.75e1
variant carriers: 9

GenotypeDepth
all individuals: 15022
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2838
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3840
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2692
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7196
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32262
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9123
bin: 9.75e1
variant carriers: 151

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1528
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499250374812594e-5
allele num: 66700
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.91085003455425e-4
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 140
allele frequency: 1.346412771686863e-2
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.014234e6

FS
type: SiteQuality
SIO_000300: 5.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

VQSLOD
type: SiteQuality
SIO_000300: 4.33e0

QD
type: SiteQuality
SIO_000300: 1.307e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468299
ensembl transcript: ENST00000592298
gene symbol: ZNF559
hgvsc: ENST00000592298.1:c.30T>C
hgvsp: ENST00000592298.1:c.30T>C(p.%3D)
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605301
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605301.1:n.426T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474108
ensembl transcript: ENST00000593242
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000593242.3:c.91+13799T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.323T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468153
ensembl transcript: ENST00000587557
gene symbol: ZNF559
hgvsc: ENST00000587557.1:c.222T>C
hgvsp: ENST00000587557.1:c.222T>C(p.%3D)
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473272
ensembl transcript: ENST00000602856
gene symbol: ZNF177
hgvsc: ENST00000602856.1:c.-392+13799T>C
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000442832
ensembl transcript: ENST00000538743
gene symbol: ZNF559
hgvsc: ENST00000538743.1:c.-80-2523T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: synonymous_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474076
ensembl transcript: ENST00000605071
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605071.1:c.30T>C
hgvsp: ENST00000605071.1:c.30T>C(p.%3D)
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473968
ensembl transcript: ENST00000604886
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604886.1:c.136+13799T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605522
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605522.1:n.267T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474602
ensembl transcript: ENST00000603656
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603656.1:c.-249+13799T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474760
ensembl transcript: ENST00000603380
gene symbol: ZNF559
hgvsc: ENST00000603380.1:c.30T>C
hgvsp: ENST00000603380.1:c.30T>C(p.%3D)
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+13799T>C
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 199
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2985
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1559
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27282
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1021
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15072
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 603
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7487
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 165
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2115
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 740
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 318
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 128
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 494
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2850
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7198
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32232
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2703
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9029
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3841
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499835018148004e-5
allele num: 66674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

QD
type: SiteQuality
SIO_000300: 1.313e1

FS
type: SiteQuality
SIO_000300: 4.116e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.2e-1

DP
type: SiteQuality
SIO_000300: 2.005818e6

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605471
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605471.1:n.144+8397A>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474760
ensembl transcript: ENST00000603380
gene symbol: ZNF559
hgvsc: ENST00000603380.1:c.33+4A>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474716
ensembl transcript: ENST00000604543
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604543.1:c.*17-2516A>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473968
ensembl transcript: ENST00000604886
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604886.1:c.136+13806A>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473346
ensembl transcript: ENST00000602738
gene symbol: ZNF177
hgvsc: ENST00000602738.1:c.-391+4A>C
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473974
ensembl transcript: ENST00000605006
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605006.1:c.118+13806A>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+13806A>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474719
ensembl transcript: ENST00000605750
gene symbol: ZNF559
hgvsc: ENST00000605750.1:c.119-2516A>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000325393
ensembl transcript: ENST00000317221
gene symbol: ZNF559
hgvsc: ENST00000317221.7:c.33+4A>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+13806A>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.137-2516A>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474602
ensembl transcript: ENST00000603656
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603656.1:c.-249+13806A>C
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 318
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 495
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 603
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 15072
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7496
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27192
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 740
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1557
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2115
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 199
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2985
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1023
bin: 4.75e1
variant carriers: 2

GenotypeDepth
all individuals: 165
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2845
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32148
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2701
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3841
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7197
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9030
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.885170225043277e-4
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.17e0

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.44e-1

QD
type: SiteQuality
SIO_000300: 1.17e1

DP
type: SiteQuality
SIO_000300: 2.005194e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.537e0

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605471
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605471.1:n.144+8402G>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.117+9G>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467841
ensembl transcript: ENST00000592504
gene symbol: ZNF559
hgvsc: ENST00000592504.1:c.33+9G>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474108
ensembl transcript: ENST00000593242
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000593242.3:c.91+13811G>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474760
ensembl transcript: ENST00000603380
gene symbol: ZNF559
hgvsc: ENST00000603380.1:c.33+9G>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474076
ensembl transcript: ENST00000605071
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605071.1:c.33+9G>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.137-2511G>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468299
ensembl transcript: ENST00000592298
gene symbol: ZNF559
hgvsc: ENST00000592298.1:c.33+9G>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.326+9G>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468153
ensembl transcript: ENST00000587557
gene symbol: ZNF559
hgvsc: ENST00000587557.1:c.225+9G>C
variant of: http://identifiers.org/hgnc/28197

GenotypeDepth
all individuals: 603
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 741
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 7505
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 213
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27037
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 85
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 494
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2987
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1557
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15083
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 165
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 318
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2115
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1022
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 199
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9027
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 31969
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2844
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7188
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2700
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3842
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500285054160291e-5
allele num: 66654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.526e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

FS
type: SiteQuality
SIO_000300: 4.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.02e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

DP
type: SiteQuality
SIO_000300: 2.004242e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468153
ensembl transcript: ENST00000587557
gene symbol: ZNF559
hgvsc: ENST00000587557.1:c.225+12A>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473911
ensembl transcript: ENST00000603974
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603974.1:c.33+12A>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474716
ensembl transcript: ENST00000604543
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604543.1:c.*17-2508A>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.137-2508A>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+13814A>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+13814A>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605522
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605522.1:n.270+12A>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000325393
ensembl transcript: ENST00000317221
gene symbol: ZNF559
hgvsc: ENST00000317221.7:c.33+12A>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467841
ensembl transcript: ENST00000592504
gene symbol: ZNF559
hgvsc: ENST00000592504.1:c.33+12A>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474108
ensembl transcript: ENST00000593242
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000593242.3:c.91+13814A>C
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 15065
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 495
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1021
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2983
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1557
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2115
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 740
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 26946
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 118
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7498
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 604
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 199
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 291
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 318
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 165
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3839
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2841
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9029
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7181
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2700
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31881
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500780405811022e-5
allele num: 66632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.454e-1

MQ
type: SiteQuality
SIO_000300: 5.875e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.466e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.61e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-1

DP
type: SiteQuality
SIO_000300: 2.002945e6

FS
type: SiteQuality
SIO_000300: 4.433e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.0e-3

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466496
ensembl transcript: ENST00000592896
gene symbol: ZNF559
hgvsc: ENST00000592896.1:c.117+14T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474602
ensembl transcript: ENST00000603656
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603656.1:c.-249+13816T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473346
ensembl transcript: ENST00000602738
gene symbol: ZNF177
hgvsc: ENST00000602738.1:c.-391+14T>C
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473272
ensembl transcript: ENST00000602856
gene symbol: ZNF177
hgvsc: ENST00000602856.1:c.-392+13816T>C
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.326+14T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+13816T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.33+14T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474108
ensembl transcript: ENST00000593242
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000593242.3:c.91+13816T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000377461
ensembl transcript: ENST00000393883
gene symbol: ZNF559
hgvsc: ENST00000393883.2:c.33+14T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+13816T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468299
ensembl transcript: ENST00000592298
gene symbol: ZNF559
hgvsc: ENST00000592298.1:c.33+14T>C
variant of: http://identifiers.org/hgnc/28197

GenotypeDepth
all individuals: 184
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2981
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 318
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 199
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 742
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 15050
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 603
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1558
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1021
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 165
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7491
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 366
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 26821
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 493
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2115
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2838
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2701
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31681
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7171
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3841
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9026
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66624
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.738e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.805e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.911e0

DP
type: SiteQuality
SIO_000300: 2.001591e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.46e-1

FS
type: SiteQuality
SIO_000300: 3.158e0

QD
type: SiteQuality
SIO_000300: 9.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605471
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605471.1:n.144+8410T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473968
ensembl transcript: ENST00000604886
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604886.1:c.136+13819T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473911
ensembl transcript: ENST00000603974
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603974.1:c.33+17T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468299
ensembl transcript: ENST00000592298
gene symbol: ZNF559
hgvsc: ENST00000592298.1:c.33+17T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+13819T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474760
ensembl transcript: ENST00000603380
gene symbol: ZNF559
hgvsc: ENST00000603380.1:c.33+17T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466496
ensembl transcript: ENST00000592896
gene symbol: ZNF559
hgvsc: ENST00000592896.1:c.117+17T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473346
ensembl transcript: ENST00000602738
gene symbol: ZNF177
hgvsc: ENST00000602738.1:c.-391+17T>C
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467841
ensembl transcript: ENST00000592504
gene symbol: ZNF559
hgvsc: ENST00000592504.1:c.33+17T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474076
ensembl transcript: ENST00000605071
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605071.1:c.33+17T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.326+17T>C
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1023
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 26696
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 603
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 89
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7494
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15029
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 165
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 318
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1563
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 740
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 439
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 233
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 493
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2985
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2116
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31545
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2694
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7156
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2834
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3829
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9027
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.469812630117973e-4
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.514e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.7e-2

FS
type: SiteQuality
SIO_000300: 4.173e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.0008e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466496
ensembl transcript: ENST00000592896
gene symbol: ZNF559
hgvsc: ENST00000592896.1:c.117+21T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000442832
ensembl transcript: ENST00000538743
gene symbol: ZNF559
hgvsc: ENST00000538743.1:c.-80-2499T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000445323
ensembl transcript: ENST00000541595
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000541595.2:c.-391+21T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474716
ensembl transcript: ENST00000604543
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604543.1:c.*17-2499T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473911
ensembl transcript: ENST00000603974
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603974.1:c.33+21T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.117+21T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+13823T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605522
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605522.1:n.270+21T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000465787
ensembl transcript: ENST00000586255
gene symbol: ZNF559
hgvsc: ENST00000586255.1:c.117+21T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.33+21T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000325393
ensembl transcript: ENST00000317221
gene symbol: ZNF559
hgvsc: ENST00000317221.7:c.33+21T>C
variant of: http://identifiers.org/hgnc/28197

GenotypeDepth
all individuals: 26394
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 14959
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 199
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 165
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 493
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 741
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7469
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 419
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1558
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2988
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 641
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 603
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1022
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2115
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 268
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 318
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7133
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31137
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3826
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2694
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9026
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1129
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2829
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.38e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

FS
type: SiteQuality
SIO_000300: 6.984e0

QD
type: SiteQuality
SIO_000300: 1.41e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.03e0

VQSLOD
type: SiteQuality
SIO_000300: -3.74e-1

DP
type: SiteQuality
SIO_000300: 1.997059e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466496
ensembl transcript: ENST00000592896
gene symbol: ZNF559
hgvsc: ENST00000592896.1:c.117+26A>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.117+26A>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000377461
ensembl transcript: ENST00000393883
gene symbol: ZNF559
hgvsc: ENST00000393883.2:c.33+26A>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474719
ensembl transcript: ENST00000605750
gene symbol: ZNF559
hgvsc: ENST00000605750.1:c.119-2494A>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.326+26A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474716
ensembl transcript: ENST00000604543
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604543.1:c.*17-2494A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.33+26A>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467841
ensembl transcript: ENST00000592504
gene symbol: ZNF559
hgvsc: ENST00000592504.1:c.33+26A>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473968
ensembl transcript: ENST00000604886
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604886.1:c.136+13828A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000445323
ensembl transcript: ENST00000541595
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000541595.2:c.-391+26A>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000325393
ensembl transcript: ENST00000317221
gene symbol: ZNF559
hgvsc: ENST00000317221.7:c.33+26A>G
variant of: http://identifiers.org/hgnc/28197

GenotypeDepth
all individuals: 318
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2980
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 602
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7438
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 268
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 793
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 115
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 165
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 898
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1555
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25803
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 740
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 199
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14946
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 493
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2115
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1024
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2818
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9026
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2685
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3822
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30347
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7058
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502042778178322e-5
allele num: 66576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

MQ
type: SiteQuality
SIO_000300: 5.84e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 2.201e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.992184e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.33+31C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.117+31C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.137-2489C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.326+31C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468299
ensembl transcript: ENST00000592298
gene symbol: ZNF559
hgvsc: ENST00000592298.1:c.33+31C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+13833C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474108
ensembl transcript: ENST00000593242
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000593242.3:c.91+13833C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473968
ensembl transcript: ENST00000604886
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604886.1:c.136+13833C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473911
ensembl transcript: ENST00000603974
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603974.1:c.33+31C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466496
ensembl transcript: ENST00000592896
gene symbol: ZNF559
hgvsc: ENST00000592896.1:c.117+31C>T
variant of: http://identifiers.org/hgnc/28197

GenotypeDepth
all individuals: 1563
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1532
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1132
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14806
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 602
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25017
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2978
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1023
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 199
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 493
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2115
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 165
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7375
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 740
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 318
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 268
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6992
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2678
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3812
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2805
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29268
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1536
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9026
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.079766536964981e-5
allele num: 16448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-1

DP
type: SiteQuality
SIO_000300: 1.985195e6

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

FS
type: SiteQuality
SIO_000300: 2.227e0

QD
type: SiteQuality
SIO_000300: 1.335e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.629e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.151e0

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.326+37C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467841
ensembl transcript: ENST00000592504
gene symbol: ZNF559
hgvsc: ENST00000592504.1:c.33+37C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.137-2483C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+13839C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468153
ensembl transcript: ENST00000587557
gene symbol: ZNF559
hgvsc: ENST00000587557.1:c.225+37C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000442832
ensembl transcript: ENST00000538743
gene symbol: ZNF559
hgvsc: ENST00000538743.1:c.-80-2483C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.33+37C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+13839C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474602
ensembl transcript: ENST00000603656
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603656.1:c.-249+13839C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474760
ensembl transcript: ENST00000603380
gene symbol: ZNF559
hgvsc: ENST00000603380.1:c.33+37C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473968
ensembl transcript: ENST00000604886
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604886.1:c.136+13839C>T
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 602
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1332
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2115
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 493
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 165
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 199
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 144
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1021
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14281
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2961
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7274
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23627
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 318
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3352
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 740
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1558
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26816
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2784
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6803
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9025
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1346
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2668
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3784
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.315886984715146e-4
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.862e1

VQSLOD
type: SiteQuality
SIO_000300: -2.282e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.67e-1

DP
type: SiteQuality
SIO_000300: 1.971001e6

FS
type: SiteQuality
SIO_000300: 1.436e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.465e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468153
ensembl transcript: ENST00000587557
gene symbol: ZNF559
hgvsc: ENST00000587557.1:c.225+39T>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.326+39T>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473272
ensembl transcript: ENST00000602856
gene symbol: ZNF177
hgvsc: ENST00000602856.1:c.-392+13841T>G
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473968
ensembl transcript: ENST00000604886
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604886.1:c.136+13841T>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473911
ensembl transcript: ENST00000603974
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603974.1:c.33+39T>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000325393
ensembl transcript: ENST00000317221
gene symbol: ZNF559
hgvsc: ENST00000317221.7:c.33+39T>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474719
ensembl transcript: ENST00000605750
gene symbol: ZNF559
hgvsc: ENST00000605750.1:c.119-2481T>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000445323
ensembl transcript: ENST00000541595
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000541595.2:c.-391+39T>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474108
ensembl transcript: ENST00000593242
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000593242.3:c.91+13841T>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+13841T>G
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 1551
bin: 4.25e1
variant carriers: 2

GenotypeDepth
all individuals: 14277
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 602
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3585
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 493
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1021
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 23500
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1340
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 740
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 318
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 149
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 199
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2115
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7173
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 165
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2953
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2666
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2796
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6830
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26846
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3784
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1142
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9025
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1534
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503307276007216e-5
allele num: 66520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQRankSum
type: SiteQuality
SIO_000300: 7.45e-1

DP
type: SiteQuality
SIO_000300: 1.968583e6

FS
type: SiteQuality
SIO_000300: 2.208e0

QD
type: SiteQuality
SIO_000300: 1.61e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.9e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+13852T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474716
ensembl transcript: ENST00000604543
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604543.1:c.*17-2470T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605522
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605522.1:n.270+50T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474108
ensembl transcript: ENST00000593242
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000593242.3:c.91+13852T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474719
ensembl transcript: ENST00000605750
gene symbol: ZNF559
hgvsc: ENST00000605750.1:c.119-2470T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474760
ensembl transcript: ENST00000603380
gene symbol: ZNF559
hgvsc: ENST00000603380.1:c.33+50T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.137-2470T>C
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.33+50T>C
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473346
ensembl transcript: ENST00000602738
gene symbol: ZNF177
hgvsc: ENST00000602738.1:c.-391+50T>C
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.326+50T>C
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 493
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 13964
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 165
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1019
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2116
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 4518
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22930
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1348
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 740
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 208
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1551
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 602
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7053
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 318
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 198
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2956
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1122
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9021
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 108
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1438
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2678
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3778
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3358
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6532
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2210
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18838
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2753
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3260
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.633911368015414e-5
allele num: 10380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.610000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.38e-1

FS
type: SiteQuality
SIO_000300: 1.1209e1

QD
type: SiteQuality
SIO_000300: 1.519e1

DP
type: SiteQuality
SIO_000300: 1.961856e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.399999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.118e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474719
ensembl transcript: ENST00000605750
gene symbol: ZNF559
hgvsc: ENST00000605750.1:c.119-1947C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474716
ensembl transcript: ENST00000604543
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604543.1:c.*17-1947C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.137-1947C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466496
ensembl transcript: ENST00000592896
gene symbol: ZNF559
hgvsc: ENST00000592896.1:c.118-38C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468299
ensembl transcript: ENST00000592298
gene symbol: ZNF559
hgvsc: ENST00000592298.1:c.34-38C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+14375C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.118-38C>T
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473272
ensembl transcript: ENST00000602856
gene symbol: ZNF177
hgvsc: ENST00000602856.1:c.-392+14375C>T
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000445323
ensembl transcript: ENST00000541595
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000541595.2:c.-391+573C>T
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473346
ensembl transcript: ENST00000602738
gene symbol: ZNF177
hgvsc: ENST00000602738.1:c.-391+573C>T
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.327-38C>T
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 2713
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4806
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6003
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1414
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3565
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4463
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 98
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2026
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1662
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2865
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2289
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5665
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3540
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6154
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1991
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5268
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6083
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3671
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52256
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
type: SiteQuality
SIO_000300: 3.936023e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 6.905e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.468e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.523e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000468153
ensembl transcript: ENST00000587557
gene symbol: ZNF559
hgvsc: ENST00000587557.1:c.226-37G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474602
ensembl transcript: ENST00000603656
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603656.1:c.-249+14376G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473272
ensembl transcript: ENST00000602856
gene symbol: ZNF177
hgvsc: ENST00000602856.1:c.-392+14376G>A
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474980
ensembl transcript: ENST00000603024
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603024.1:c.137-1946G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000473968
ensembl transcript: ENST00000604886
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000604886.1:c.136+14376G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000605471
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605471.1:n.144+8967G>A
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000377461
ensembl transcript: ENST00000393883
gene symbol: ZNF559
hgvsc: ENST00000393883.2:c.34-37G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000442832
ensembl transcript: ENST00000538743
gene symbol: ZNF559
hgvsc: ENST00000538743.1:c.-80-1946G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467841
ensembl transcript: ENST00000592504
gene symbol: ZNF559
hgvsc: ENST00000592504.1:c.34-37G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.34-37G>A
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466496
ensembl transcript: ENST00000592896
gene symbol: ZNF559
hgvsc: ENST00000592896.1:c.118-37G>A
variant of: http://identifiers.org/hgnc/28197

GenotypeDepth
all individuals: 66
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3541
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 4463
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6082
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 5266
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3565
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1414
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6152
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2871
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6004
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2288
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4812
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1675
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1991
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5666
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2713
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2032
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1090
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3723
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52264
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999040307101727e-5
allele num: 66688
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.349e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.936315e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474354
ensembl transcript: ENST00000605775
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605775.1:c.136+14383C>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466496
ensembl transcript: ENST00000592896
gene symbol: ZNF559
hgvsc: ENST00000592896.1:c.118-30C>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000413568
ensembl transcript: ENST00000446085
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000446085.4:c.-392+14383C>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467048
ensembl transcript: ENST00000585352
gene symbol: ZNF559
hgvsc: ENST00000585352.1:c.34-30C>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000466325
ensembl transcript: ENST00000588124
gene symbol: ZNF559
hgvsc: ENST00000588124.1:c.118-30C>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188629
ensembl protein: ENSP00000473346
ensembl transcript: ENST00000602738
gene symbol: ZNF177
hgvsc: ENST00000602738.1:c.-391+581C>G
variant of: http://identifiers.org/hgnc/12966

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000474760
ensembl transcript: ENST00000603380
gene symbol: ZNF559
hgvsc: ENST00000603380.1:c.34-30C>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl transcript: ENST00000603099
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000603099.1:n.327-30C>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474918
ensembl transcript: ENST00000605093
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605093.1:c.113+14383C>G
variant of: http://identifiers.org/hgnc/42964

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000188321
ensembl protein: ENSP00000467841
ensembl transcript: ENST00000592504
gene symbol: ZNF559
hgvsc: ENST00000592504.1:c.34-30C>G
variant of: http://identifiers.org/hgnc/28197

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000270011
ensembl protein: ENSP00000474076
ensembl transcript: ENST00000605071
gene symbol: ZNF559-ZNF177
hgvsc: ENST00000605071.1:c.34-30C>G
variant of: http://identifiers.org/hgnc/42964

GenotypeDepth
all individuals: 6004
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2714
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 3539
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1700
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6154
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4812
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2900
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3568
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2291
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4464
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1992
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1414
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2038
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5266
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5666
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6082
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 913
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52266
bin: 9.75e1
variant carriers: 1