X-55172682-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055172682
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055172682
    reference: chr 0
allele count: 1
allele frequency: 1.140276859221419e-5
allele num: 87698
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.186A>T
  hgvsp: ENST00000332132.4:c.186A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.180A>T
  hgvsp: ENST00000489298.1:c.180A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.186A>T
  hgvsp: ENST00000425133.2:c.186A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.174A>T
  hgvsp: ENST00000477847.2:c.174A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.183A>T
  hgvsp: ENST00000358460.4:c.183A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.*49A>T
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28833
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
  all individuals: 2767
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly62Gly
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

X-55172683-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055172683
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055172683
    reference: chr 0
allele count: 1
allele frequency: 1.140302864440795e-5
allele num: 87696
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.173G>C
  hgvsp: ENSP00000421161.1:p.Gly58Ala
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.182G>C
  hgvsp: ENSP00000364101.3:p.Gly61Ala
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.179G>C
  hgvsp: ENSP00000423164.1:p.Gly60Ala
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.185G>C
  hgvsp: ENSP00000333394.4:p.Gly62Ala
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.*48G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.185G>C
  hgvsp: ENSP00000397188.2:p.Gly62Ala
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14333
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 181
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34518
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5406
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genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly62Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

X-55172687-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055172687
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055172687
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 87680
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.181A>G
  hgvsp: ENSP00000333394.4:p.Ser61Gly
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.*44A>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.178A>G
  hgvsp: ENSP00000364101.3:p.Ser60Gly
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.181A>G
  hgvsp: ENSP00000397188.2:p.Ser61Gly
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.175A>G
  hgvsp: ENSP00000423164.1:p.Ser59Gly
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.169A>G
  hgvsp: ENSP00000421161.1:p.Ser57Gly
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser61Gly
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ

X-55172697-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055172697
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055172697
    reference: chr 0
allele count: 2
allele frequency: 2.281282080529257e-5
allele num: 87670
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.165A>T
  hgvsp: ENST00000489298.1:c.165A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.*34A>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.171A>T
  hgvsp: ENST00000332132.4:c.171A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.159A>T
  hgvsp: ENST00000477847.2:c.159A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.168A>T
  hgvsp: ENST00000358460.4:c.168A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.171A>T
  hgvsp: ENST00000425133.2:c.171A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1898
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 189
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 8045
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34680
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro57Pro
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum

X-55172701-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055172701
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055172701
    reference: chr 0
allele count: 2
allele frequency: 2.281750559028887e-5
allele num: 87652
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.155T>C
  hgvsp: ENSP00000421161.1:p.Ile52Thr
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.167T>C
  hgvsp: ENSP00000397188.2:p.Ile56Thr
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.*30T>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.167T>C
  hgvsp: ENSP00000333394.4:p.Ile56Thr
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.164T>C
  hgvsp: ENSP00000364101.3:p.Ile55Thr
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.161T>C
  hgvsp: ENSP00000423164.1:p.Ile54Thr
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34644
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2740
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile56Thr
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

X-55172708-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055172708
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055172708
    reference: chr 0
allele count: 1
allele frequency: 1.141591607018505e-5
allele num: 87597
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.148A>C
  hgvsp: ENSP00000421161.1:p.Ile50Leu
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.160A>C
  hgvsp: ENSP00000333394.4:p.Ile54Leu
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.336A>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.157A>C
  hgvsp: ENSP00000364101.3:p.Ile53Leu
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.154A>C
  hgvsp: ENSP00000423164.1:p.Ile52Leu
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.*23A>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.160A>C
  hgvsp: ENSP00000397188.2:p.Ile54Leu
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile54Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

X-55172710-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055172710
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055172710
    reference: chr 0
allele count: 2
allele frequency: 2.283052898335654e-5
allele num: 87602
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.152G>A
  hgvsp: ENSP00000423164.1:p.Arg51His
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.*21G>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.334G>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.155G>A
  hgvsp: ENSP00000364101.3:p.Arg52His
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.146G>A
  hgvsp: ENSP00000421161.1:p.Arg49His
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.158G>A
  hgvsp: ENSP00000333394.4:p.Arg53His
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.158G>A
  hgvsp: ENSP00000397188.2:p.Arg53His
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8320
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34549
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8007
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg53His
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

X-55172711-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055172711
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055172711
    reference: chr 0
allele count: 2
allele frequency: 2.28320927896251e-5
allele num: 87596
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.145C>T
  hgvsp: ENSP00000421161.1:p.Arg49Cys
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.157C>T
  hgvsp: ENSP00000397188.2:p.Arg53Cys
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.333C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.151C>T
  hgvsp: ENSP00000423164.1:p.Arg51Cys
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.*20C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.157C>T
  hgvsp: ENSP00000333394.4:p.Arg53Cys
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.154C>T
  hgvsp: ENSP00000364101.3:p.Arg52Cys
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5202
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg53Cys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: G
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

X-55172727-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055172727
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055172727
    reference: chr 0
allele count: 1
allele frequency: 1.143327540473795e-5
allele num: 87464
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.317T>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.141T>C
  hgvsp: ENST00000425133.2:c.141T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.135T>C
  hgvsp: ENST00000489298.1:c.135T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.*4T>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.129T>C
  hgvsp: ENST00000477847.2:c.129T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.138T>C
  hgvsp: ENST00000358460.4:c.138T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.141T>C
  hgvsp: ENST00000332132.4:c.141T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2735
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7981
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3215
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn47Asn
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD

X-55172729-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055172729
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055172729
    reference: chr 0
allele count: 1
allele frequency: 1.143719834389368e-5
allele num: 87434
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.315A>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.139A>T
  hgvsp: ENSP00000397188.2:p.Asn47Tyr
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.136A>T
  hgvsp: ENSP00000364101.3:p.Asn46Tyr
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.127A>T
  hgvsp: ENSP00000421161.1:p.Asn43Tyr
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.*2A>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.133A>T
  hgvsp: ENSP00000423164.1:p.Asn45Tyr
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.139A>T
  hgvsp: ENSP00000333394.4:p.Asn47Tyr
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34243
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2734
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asn47Tyr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS

X-55172760-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055172760
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055172758
    reference: chr 0
allele count: 1
allele frequency: 1.148910258619699e-5
allele num: 87039
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.124-18_124-17delCT
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.118-18_118-17delCT
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.121-18_121-17delCT
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.112-18_112-17delCT
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.124-18_124-17delCT
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.300-18_300-17delCT
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.128-18_128-17delCT
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8091
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3707
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33065
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5201
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
reference allele: CAG
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

X-55172765-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055172765
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055172764
    reference: chr 0
allele count: 1
allele frequency: 1.150020125352194e-5
allele num: 86955
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.300-22delC
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.112-22delC
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.118-22delC
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.124-22delC
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.124-22delC
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.121-22delC
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.128-22delC
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 3.25e1
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3700
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32495
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: AG
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

X-55172790-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055172790
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055172790
    reference: chr 0
allele count: 1
allele frequency: 1.158064179916851e-5
allele num: 86351
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.300-46T>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.121-46T>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.118-46T>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.128-46T>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.112-46T>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.124-46T>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.124-46T>G
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7227
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 95
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1504
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

X-55185507-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055185507
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055185507
    reference: chr 0
allele count: 1
allele frequency: 1.259890137580003e-5
allele num: 79372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.117+55C>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.299+55C>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.123+52C>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.123+52C>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.120+55C>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.111+55C>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.127+48C>G
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9318
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 355
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 14250
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genotype quality: GenotypeQuality
  all individuals: 5151
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: QD

X-55185508-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055185508
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055185508
    reference: chr 0
allele count: 5
allele frequency: 6.286777649248101e-5
allele num: 79532
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.123+51T>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.299+54T>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.123+51T>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.111+54T>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.120+54T>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.127+47T>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.117+54T>A
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 4
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 260
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1615
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum

X-55185512-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055185512
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055185512
    reference: chr 0
allele count: 3
allele frequency: 3.769128326255748e-5
allele num: 79594
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.111+50A>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.299+50A>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.127+43A>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.123+47A>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.123+47A>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.117+50A>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.120+50A>T
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9438
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6820
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11893
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4865
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3861
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5088
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6185
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

X-55185519-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055185519
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055185519
    reference: chr 0
allele count: 1
allele frequency: 1.25365125929269e-5
allele num: 79767
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.120+43A>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.123+40A>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.299+43A>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.111+43A>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.127+36A>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.117+43A>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.123+40A>G
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6771
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11632
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4897
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3036
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
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genotype quality: GenotypeQuality
  all individuals: 715
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 4350
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6693
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum

X-55185555-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055185555
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055185555
    reference: chr 0
allele count: 1
allele frequency: 1.182550287950995e-5
allele num: 84563
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.127A>G
  hgvsp: ENSP00000420895.1:p.Ile43Val
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.120+7A>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.117+7A>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.123+4A>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.123+4A>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.299+7A>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.111+7A>G
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5471
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile43Val
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

X-55185568-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055185568
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055185568
    reference: chr 0
allele count: 3
allele frequency: 3.485211087618207e-5
allele num: 86078
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.111T>C
  hgvsp: ENST00000489298.1:c.111T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.114T>C
  hgvsp: ENST00000332132.4:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.105T>C
  hgvsp: ENST00000477847.2:c.105T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.114T>C
  hgvsp: ENST00000425133.2:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.114T>C
  hgvsp: ENST00000358460.4:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.293T>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.114T>C
  hgvsp: ENST00000472571.2:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31874
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp38Asp
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

X-55185578-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055185578
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055185578
    reference: chr 0
allele count: 1
allele frequency: 1.152219751350978e-5
allele num: 86789
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.104A>G
  hgvsp: ENSP00000420895.1:p.Asp35Gly
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.95A>G
  hgvsp: ENSP00000421161.1:p.Asp32Gly
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.101A>G
  hgvsp: ENSP00000423164.1:p.Asp34Gly
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.104A>G
  hgvsp: ENSP00000333394.4:p.Asp35Gly
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.104A>G
  hgvsp: ENSP00000364101.3:p.Asp35Gly
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.104A>G
  hgvsp: ENSP00000397188.2:p.Asp35Gly
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.283A>G
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4907
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp35Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP

X-55185583-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055185583
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055185583
    reference: chr 0
allele count: 14
allele frequency: 1.606444135905174e-4
allele num: 87149
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.99T>A
  hgvsp: ENSP00000364101.3:p.Phe33Leu
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.99T>A
  hgvsp: ENSP00000397188.2:p.Phe33Leu
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.99T>A
  hgvsp: ENSP00000420895.1:p.Phe33Leu
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.99T>A
  hgvsp: ENSP00000333394.4:p.Phe33Leu
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.278T>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.96T>A
  hgvsp: ENSP00000423164.1:p.Phe32Leu
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.90T>A
  hgvsp: ENSP00000421161.1:p.Phe30Leu
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe33Leu
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

X-55185590-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055185590
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055185590
    reference: chr 0
allele count: 2
allele frequency: 2.288434253283903e-5
allele num: 87396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.92C>T
  hgvsp: ENSP00000420895.1:p.Pro31Leu
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.83C>T
  hgvsp: ENSP00000421161.1:p.Pro28Leu
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.92C>T
  hgvsp: ENSP00000333394.4:p.Pro31Leu
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.89C>T
  hgvsp: ENSP00000423164.1:p.Pro30Leu
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.92C>T
  hgvsp: ENSP00000397188.2:p.Pro31Leu
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.92C>T
  hgvsp: ENSP00000364101.3:p.Pro31Leu
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.271C>T
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5473
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro31Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

X-55185591-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055185591
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055185591
    reference: chr 0
allele count: 1
allele frequency: 1.143876827343232e-5
allele num: 87422
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.91C>T
  hgvsp: ENSP00000364101.3:p.Pro31Ser
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.91C>T
  hgvsp: ENSP00000333394.4:p.Pro31Ser
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.82C>T
  hgvsp: ENSP00000421161.1:p.Pro28Ser
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.91C>T
  hgvsp: ENSP00000397188.2:p.Pro31Ser
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.270C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.88C>T
  hgvsp: ENSP00000423164.1:p.Pro30Ser
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.91C>T
  hgvsp: ENSP00000420895.1:p.Pro31Ser
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44195
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4999
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro31Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

X-55185602-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055185602
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055185602
    reference: chr 0
allele count: 1
allele frequency: 1.143013899049012e-5
allele num: 87488
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.80A>G
  hgvsp: ENSP00000364101.3:p.Asn27Ser
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.71A>G
  hgvsp: ENSP00000421161.1:p.Asn24Ser
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.80A>G
  hgvsp: ENSP00000397188.2:p.Asn27Ser
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.80A>G
  hgvsp: ENSP00000333394.4:p.Asn27Ser
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.80A>G
  hgvsp: ENSP00000420895.1:p.Asn27Ser
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.259A>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.77A>G
  hgvsp: ENSP00000423164.1:p.Asn26Ser
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5475
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn27Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

X-55185629-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055185629
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055185629
    reference: chr 0
allele count: 43
allele frequency: 4.920527755209466e-4
allele num: 87389
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.44A>G
  hgvsp: ENSP00000421161.1:p.Asn15Ser
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.50A>G
  hgvsp: ENSP00000423164.1:p.Asn17Ser
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.53A>G
  hgvsp: ENSP00000397188.2:p.Asn18Ser
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.53A>G
  hgvsp: ENSP00000420895.1:p.Asn18Ser
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.53A>G
  hgvsp: ENSP00000364101.3:p.Asn18Ser
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.53A>G
  hgvsp: ENSP00000333394.4:p.Asn18Ser
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.232A>G
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 9.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15413
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5065
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn18Ser
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

X-55185632-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055185632
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055185632
    reference: chr 0
allele count: 1
allele frequency: 1.146696939465869e-5
allele num: 87207
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.50G>T
  hgvsp: ENSP00000364101.3:p.Gly17Val
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.47G>T
  hgvsp: ENSP00000423164.1:p.Gly16Val
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.41G>T
  hgvsp: ENSP00000421161.1:p.Gly14Val
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.50G>T
  hgvsp: ENSP00000397188.2:p.Gly17Val
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.229G>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.50G>T
  hgvsp: ENSP00000420895.1:p.Gly17Val
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.50G>T
  hgvsp: ENSP00000333394.4:p.Gly17Val
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15476
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31854
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4858
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 5459
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43241
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 2.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly17Val
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

X-55185639-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055185639
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055185639
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 87154
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.222A>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.34A>G
  hgvsp: ENSP00000421161.1:p.Lys12Glu
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.43A>G
  hgvsp: ENSP00000333394.4:p.Lys15Glu
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.43A>G
  hgvsp: ENSP00000420895.1:p.Lys15Glu
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.43A>G
  hgvsp: ENSP00000364101.3:p.Lys15Glu
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.43A>G
  hgvsp: ENSP00000397188.2:p.Lys15Glu
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.40A>G
  hgvsp: ENSP00000423164.1:p.Lys14Glu
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 15769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43319
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5457
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys15Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

X-55185646-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055185646
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055185646
    reference: chr 0
allele count: 1
allele frequency: 1.151569589350284e-5
allele num: 86838
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.215T>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.36T>C
  hgvsp: ENST00000358460.4:c.36T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.33T>C
  hgvsp: ENST00000489298.1:c.33T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.36T>C
  hgvsp: ENST00000425133.2:c.36T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.36T>C
  hgvsp: ENST00000472571.2:c.36T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.27T>C
  hgvsp: ENST00000477847.2:c.27T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.36T>C
  hgvsp: ENST00000332132.4:c.36T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1654
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30653
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4895
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15728
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genotype depth: GenotypeDepth
  all individuals: 269
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genotype depth: GenotypeDepth
  all individuals: 11
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genotype depth: GenotypeDepth
  all individuals: 137
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 362
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genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
  all individuals: 16
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genotype quality: GenotypeQuality
  all individuals: 481
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genotype quality: GenotypeQuality
  all individuals: 6
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genotype quality: GenotypeQuality
  all individuals: 1102
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genotype quality: GenotypeQuality
  all individuals: 1568
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
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  variant carriers: 0
hgvs: p.Asn12Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum

X-55185686-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055185686
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055185686
    reference: chr 0
allele count: 1
allele frequency: 1.25702361947381e-5
allele num: 79553
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.21-25C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.21-25C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.12-25C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.21-25C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.200-25C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.21-25C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.18-25C>T
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6601
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15994
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5448
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13557
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
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genotype quality: GenotypeQuality
  all individuals: 79
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genotype quality: GenotypeQuality
  all individuals: 498
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5195
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum

X-55185687-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055185687
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055185687
    reference: chr 0
allele count: 3
allele frequency: 3.770739064856712e-5
allele num: 79560
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.21-26A>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.21-26A>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.18-26A>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.21-26A>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.21-26A>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.200-26A>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.12-26A>G
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2875
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3992
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

X-55185700-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055185700
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055185700
    reference: chr 0
allele count: 1
allele frequency: 1.289241281505834e-5
allele num: 77565
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.21-39G>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.21-39G>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.21-39G>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.200-39G>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.18-39G>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.21-39G>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.12-39G>T
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10064
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12602
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1731
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10842
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1698
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-55185700-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055185700
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055185700
    reference: chr 0
allele count: 1
allele frequency: 1.289241281505834e-5
allele num: 77565
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.200-39G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.21-39G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.21-39G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.21-39G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.18-39G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.12-39G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.21-39G>C
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10064
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7198
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7871
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genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 353
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4525
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4802
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1731
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3009
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1698
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-55187259-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187259
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187259
    reference: chr 0
allele count: 3
allele frequency: 2.375861249703017e-4
allele num: 12627
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+311G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+311G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.11+149G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.17+39G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+311G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.116G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+311G>C
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
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genotype depth: GenotypeDepth
  all individuals: 3428
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2103
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2549
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 98
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genotype quality: GenotypeQuality
  all individuals: 488
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS

X-55187262-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187262
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187262
    reference: chr 0
allele count: 2
allele frequency: 1.58378207158695e-4
allele num: 12628
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.11+146G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+308G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.17+36G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.113G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+308G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+308G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+308G>C
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2004
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2555
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 2429
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genotype quality: GenotypeQuality
  all individuals: 112
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

X-55187295-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187295
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187295
    reference: chr 0
allele count: 1
allele frequency: 7.882084023015685e-5
allele num: 12687
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+275C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.17+3C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+275C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.11+113C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.80C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+275C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+275C>T
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2775
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2574
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 6.75e1
  variant carriers: 0
hgvs: c.17+3C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

X-55187313-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187313
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187313
    reference: chr 0
allele count: 1
allele frequency: 7.869058860560277e-5
allele num: 12708
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+257T>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+257T>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+257T>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.11+95T>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+257T>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.2T>G
  hgvsp: ENSP00000423164.1:p.Met1?
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.62T>G
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2572
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3349
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

X-55187314-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187314
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187314
    reference: chr 0
allele count: 1
allele frequency: 7.866582756450598e-5
allele num: 12712
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.11+94A>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.1A>T
  hgvsp: ENSP00000423164.1:p.Met1?
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.61A>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+256A>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+256A>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+256A>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+256A>T
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3390
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2563
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ

X-55187340-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187340
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187340
    reference: chr 0
allele count: 1
allele frequency: 7.830853563038371e-5
allele num: 12770
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+230T>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+230T>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+230T>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.35T>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.-26T>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.11+68T>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+230T>C
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6285
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2538
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5576
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

X-55187349-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187349
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187349
    reference: chr 0
allele count: 1
allele frequency: 7.810669374365383e-5
allele num: 12803
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.26G>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+221G>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.-35G>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.11+59G>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+221G>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+221G>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+221G>A
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7241
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

X-55187356-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187356
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187356
    reference: chr 0
allele count: 1
allele frequency: 7.76940408670655e-5
allele num: 12871
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+214C>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+214C>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.11+52C>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.19C>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.-42C>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+214C>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+214C>A
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 78
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 8
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

X-55187359-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187359
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187359
    reference: chr 0
allele count: 1
allele frequency: 7.757350089209525e-5
allele num: 12891
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+211C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.11+49C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.-45C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+211C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182518
  ensembl transcript: ENST00000478918
  gene symbol: FAM104B
  hgvsc: ENST00000478918.1:n.16C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+211C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+211C>T
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 24
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-55187377-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187377
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187377
    reference: chr 0
allele count: 1
allele frequency: 7.68403258029814e-5
allele num: 13014
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+193C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+193C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.11+31C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.-63C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+193C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+193C>T
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 984
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

X-55187392-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187392
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187392
    reference: chr 0
allele count: 1
allele frequency: 7.621370322383964e-5
allele num: 13121
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+178G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+178G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.11+16G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+178G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+178G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.-78G>C
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14732
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1456
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2599
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ

X-55187394-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187394
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187394
    reference: chr 0
allele count: 67
allele frequency: 5.093894928913556e-3
allele num: 13153
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+176C>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+176C>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+176C>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.11+14C>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.-80C>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+176C>A
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16800
  bin: 2.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 15131
  bin: 7.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2588
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2608
  bin: 9.75e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 8.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

X-55187397-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187397
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187397
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 13196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+173T>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+173T>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.-83T>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+173T>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+173T>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.11+11T>C
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17955
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-55187401-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187401
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187401
    reference: chr 0
allele count: 1
allele frequency: 7.558578987150416e-5
allele num: 13230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+169G>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+169G>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+169G>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.11+7G>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.-87G>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+169G>A
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18820
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16956
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
hgvs: c.11+7G>A
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

X-55187411-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187411
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187411
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 13301
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.-97G>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+159G>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.8G>T
  hgvsp: ENSP00000421161.1:p.Cys3Phe
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+159G>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+159G>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+159G>T
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21023
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1970
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2595
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Cys3Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

X-55187421-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187421
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187421
    reference: chr 0
allele count: 1154
allele frequency: 8.502173432549916e-2
allele num: 13573
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.-107C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+149C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+149C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+149C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.-3C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+149C>T
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.75e1
  variant carriers: 274
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 7.5e0
  variant carriers: 433
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 303
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  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 3.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 2.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 2.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 22674
  bin: 2.5e0
  variant carriers: 624
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 59
genotype depth: GenotypeDepth
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  variant carriers: 27
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19302
  bin: 7.5e0
  variant carriers: 358
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 8.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 1.25e1
  variant carriers: 161
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1054
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 1.75e1
  variant carriers: 107
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 307
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genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.75e1
  variant carriers: 81
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.25e1
  variant carriers: 47
num of homozygotes: 53
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: MQ

X-55187441-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187441
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187441
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 13912
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.-23G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.-127G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+129G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+129G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+129G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+129G>C
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4156
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31986
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2212
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29486
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 303
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

X-55187460-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187460
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187460
    reference: chr 0
allele count: 5
allele frequency: 3.334889615153738e-4
allele num: 14993
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.-146C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+110C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+110C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+110C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.-42C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+110C>T
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33216
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1707
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31417
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 499
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2494
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

X-55187521-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187521
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187521
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 60828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+49C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+49C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.-207C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+49C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+49C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.-103C>T
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18769
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4072
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2835
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3084
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1608
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3305
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12698
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3456
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS

X-55187522-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187522
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187522
    reference: chr 0
allele count: 47
allele frequency: 7.724799894811235e-4
allele num: 60843
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+48C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.-104C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+48C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.-208C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+48C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+48C>T
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7138
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6556
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11638
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 9068
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18821
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
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genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3419
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 19136
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1977
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2461
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 501
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2899
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 320
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2892
  bin: 1.75e1
  variant carriers: 3
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

X-55187523-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187523
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187523
    reference: chr 0
allele count: 1
allele frequency: 1.644682740699319e-5
allele num: 60802
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+47T>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.-105T>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.-209T>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+47T>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+47T>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+47T>G
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7007
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9184
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11642
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 12
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genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 292
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ

X-55187524-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187524
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187524
    reference: chr 0
allele count: 39
allele frequency: 6.419753086419753e-4
allele num: 60750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.-210G>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+46G>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+46G>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+46G>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.-106G>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+46G>T
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6840
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 549
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4092
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11599
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  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19493
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 93
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3373
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2380
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3362
  bin: 7.5e0
  variant carriers: 2
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

X-55187526-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187526
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187526
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 60721
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+44T>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+44T>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.-108T>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+44T>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.-212T>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+44T>G
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2264
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genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ

X-55187529-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187529
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187529
    reference: chr 0
allele count: 2
allele frequency: 3.30622231038815e-5
allele num: 60492
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+41C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+41C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000423164
  ensembl transcript: ENST00000489298
  gene symbol: FAM104B
  hgvsc: ENST00000489298.1:c.-215C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.-111C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+41C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+41C>T
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

X-55187536-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187536
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187536
    reference: chr 0
allele count: 1
allele frequency: 1.660522732556209e-5
allele num: 60222
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+34G>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+34G>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.-118G>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+34G>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+34G>T
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19459
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP

X-55187536-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187536
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187536
    reference: chr 0
allele count: 1
allele frequency: 1.660522732556209e-5
allele num: 60222
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+34G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+34G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+34G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+34G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.-118G>C
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2811
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum

X-55187542-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187542
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187542
    reference: chr 0
allele count: 2
allele frequency: 3.335112059765208e-5
allele num: 59968
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+28G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.-124G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+28G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+28G>C
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+28G>C
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS

X-55187544-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187544
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187544
    reference: chr 0
allele count: 1
allele frequency: 1.673360107095047e-5
allele num: 59760
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000421161
  ensembl transcript: ENST00000477847
  gene symbol: FAM104B
  hgvsc: ENST00000477847.2:c.-126C>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+26C>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+26C>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+26C>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+26C>G
  variant of: http://identifiers.org/hgnc/25085
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

X-55187554-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187554
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187554
    reference: chr 0
allele count: 7
allele frequency: 1.178987081670119e-4
allele num: 59373
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+16C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+16C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+16C>T
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+16C>T
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

X-55187556-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187556
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187556
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 59354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+14G>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+14G>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+14G>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+14G>A
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 13923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ

X-55187562-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187562
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187562
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 58942
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+8C>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+8C>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+8C>A
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+8C>A
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9592
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2180
  bin: 2.75e1
  variant carriers: 0
hgvs: c.20+8C>A
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

X-55187564-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187564
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187564
    reference: chr 0
allele count: 2
allele frequency: 3.401765516302961e-5
allele num: 58793
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20+6T>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20+6T>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20+6T>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20+6T>G
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 434
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  variant carriers: 0
hgvs: c.20+6T>G
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

X-55187570-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187570
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187570
    reference: chr 0
allele count: 2
allele frequency: 3.449524827954949e-5
allele num: 57979
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20G>T
  hgvsp: ENSP00000420895.1:p.Arg7Leu
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20G>T
  hgvsp: ENSP00000333394.4:p.Arg7Leu
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20G>T
  hgvsp: ENSP00000364101.3:p.Arg7Leu
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20G>T
  hgvsp: ENSP00000397188.2:p.Arg7Leu
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg7Leu
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

X-55187570-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187570
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187570
    reference: chr 0
allele count: 1
allele frequency: 1.724762413977475e-5
allele num: 57979
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.20G>A
  hgvsp: ENSP00000420895.1:p.Arg7Gln
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.20G>A
  hgvsp: ENSP00000364101.3:p.Arg7Gln
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.20G>A
  hgvsp: ENSP00000333394.4:p.Arg7Gln
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.20G>A
  hgvsp: ENSP00000397188.2:p.Arg7Gln
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9933
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg7Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

X-55187571-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187571
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187571
    reference: chr 0
allele count: 1
allele frequency: 1.734635466356745e-5
allele num: 57649
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.19C>T
  hgvsp: ENSP00000333394.4:p.Arg7Trp
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.19C>T
  hgvsp: ENSP00000364101.3:p.Arg7Trp
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.19C>T
  hgvsp: ENSP00000397188.2:p.Arg7Trp
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.19C>T
  hgvsp: ENSP00000420895.1:p.Arg7Trp
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21137
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3816
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1925
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg7Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

X-55187576-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187576
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187576
    reference: chr 0
allele count: 1
allele frequency: 1.748771488029659e-5
allele num: 57183
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.14C>G
  hgvsp: ENSP00000364101.3:p.Pro5Arg
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.14C>G
  hgvsp: ENSP00000420895.1:p.Pro5Arg
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.14C>G
  hgvsp: ENSP00000333394.4:p.Pro5Arg
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.14C>G
  hgvsp: ENSP00000397188.2:p.Pro5Arg
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro5Arg
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

X-55187578-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187578
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187578
    reference: chr 0
allele count: 1
allele frequency: 1.759943681802182e-5
allele num: 56820
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.12C>T
  hgvsp: ENST00000332132.4:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.12C>T
  hgvsp: ENST00000358460.4:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.12C>T
  hgvsp: ENST00000472571.2:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.12C>T
  hgvsp: ENST00000425133.2:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 26254
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Cys4Cys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

X-55187579-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187579
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187579
    reference: chr 0
allele count: 7
allele frequency: 1.235810250163303e-4
allele num: 56643
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.11G>T
  hgvsp: ENSP00000333394.4:p.Cys4Phe
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.11G>T
  hgvsp: ENSP00000397188.2:p.Cys4Phe
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.11G>T
  hgvsp: ENSP00000364101.3:p.Cys4Phe
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.11G>T
  hgvsp: ENSP00000420895.1:p.Cys4Phe
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 4.75e1
  variant carriers: 1
hgvs: p.Cys4Phe
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

X-55187586-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187586
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187586
    reference: chr 0
allele count: 5
allele frequency: 9.009496008793268e-5
allele num: 55497
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.4G>C
  hgvsp: ENSP00000364101.3:p.Gly2Arg
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.4G>C
  hgvsp: ENSP00000420895.1:p.Gly2Arg
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.4G>C
  hgvsp: ENSP00000397188.2:p.Gly2Arg
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.4G>C
  hgvsp: ENSP00000333394.4:p.Gly2Arg
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11406
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6828
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21681
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27486
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4887
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16548
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly2Arg
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

X-55187587-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187587
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187587
    reference: chr 0
allele count: 1
allele frequency: 1.813927334070997e-5
allele num: 55129
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.3G>T
  hgvsp: ENSP00000364101.3:p.Met1?
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.3G>T
  hgvsp: ENSP00000397188.2:p.Met1?
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.3G>T
  hgvsp: ENSP00000333394.4:p.Met1?
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.3G>T
  hgvsp: ENSP00000420895.1:p.Met1?
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: start lost
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 21648
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10986
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5089
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15963
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2271
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum

X-55187591-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24055187591
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24055187591
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 54651
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000397188
  ensembl transcript: ENST00000425133
  gene symbol: FAM104B
  hgvsc: ENST00000425133.2:c.-2C>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000364101
  ensembl transcript: ENST00000358460
  gene symbol: FAM104B
  hgvsc: ENST00000358460.4:c.-2C>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000420895
  ensembl transcript: ENST00000472571
  gene symbol: FAM104B
  hgvsc: ENST00000472571.2:c.-2C>G
  variant of: http://identifiers.org/hgnc/25085
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182518
  ensembl protein: ENSP00000333394
  ensembl transcript: ENST00000332132
  gene symbol: FAM104B
  hgvsc: ENST00000332132.4:c.-2C>G
  variant of: http://identifiers.org/hgnc/25085
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6547
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12105
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15651
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1822
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2314
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28157
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5467
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
reference allele: G

GenotypeQuality
all individuals: 1224
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3229
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8021
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3762
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8507
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.08494047494944e-5
allele num: 47963
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10119
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.253e0

QD
type: SiteQuality
SIO_000300: 3.308e1

DP
type: SiteQuality
SIO_000300: 1.716556e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

VQSLOD
type: SiteQuality
SIO_000300: -1.505e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.704e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.091e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.786e1

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3760
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8017
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3229
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.175502527330434e-4
allele num: 8507
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10119
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9311
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.716616e6

FS
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 5.801e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.629e0

QD
type: SiteQuality
SIO_000300: 1.406e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e-1

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8046
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3758
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1519
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6631
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47956
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.9e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.05e-1

DP
type: SiteQuality
SIO_000300: 1.708797e6

FS
type: SiteQuality
SIO_000300: 2.395e0

VQSLOD
type: SiteQuality
SIO_000300: -2.468e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 6.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-1

MQ
type: SiteQuality
SIO_000300: 5.624e1

GenotypeQuality
all individuals: 26
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3238
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5212
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1206
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3762
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2741
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47949
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.977261492832427e-4
allele num: 10115
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.737e-1

MQ
type: SiteQuality
SIO_000300: 5.806e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.39e0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 3.33e1

FS
type: SiteQuality
SIO_000300: 8.412000000000001e0

DP
type: SiteQuality
SIO_000300: 1.70739e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.179999999999999e-1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3239
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5213
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3762
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8034
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.172229639519359e-5
allele num: 47936
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10115
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.706872e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e-1

MQ
type: SiteQuality
SIO_000300: 5.73e1

MQRankSum
type: SiteQuality
SIO_000300: 3.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.115e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

QD
type: SiteQuality
SIO_000300: 1.512e1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3231
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8009
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2735
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34501
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.087551927854205e-5
allele num: 47903
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9305
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.705544e6

MQ
type: SiteQuality
SIO_000300: 5.639e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.408e0

VQSLOD
type: SiteQuality
SIO_000300: -1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.516e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-1

QD
type: SiteQuality
SIO_000300: 6.22e0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3230
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3755
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2736
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5203
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.087421199849706e-5
allele num: 47906
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9305
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.889240506329114e-5
allele num: 10112
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8493
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.705304e6

MQRankSum
type: SiteQuality
SIO_000300: 2.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-2

MQ
type: SiteQuality
SIO_000300: 5.789e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.191e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e-1

QD
type: SiteQuality
SIO_000300: 1.528e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.72e-1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 1517
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8011
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 34567
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variant carriers: 0

GenotypeQuality
all individuals: 3753
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variant carriers: 0

GenotypeQuality
all individuals: 3227
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.175103855708411e-5
allele num: 47903
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10113
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9305
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8491
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.256e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -5.115e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

MQ
type: SiteQuality
SIO_000300: 5.109e1

DP
type: SiteQuality
SIO_000300: 1.705218e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.86e-1

GenotypeQuality
all individuals: 1207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 5202
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variant carriers: 1

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 1516
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3752
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.090606903183994e-5
allele num: 47833
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6613
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9295
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e0

QD
type: SiteQuality
SIO_000300: 1.374e1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.406e0

MQ
type: SiteQuality
SIO_000300: 5.765e1

DP
type: SiteQuality
SIO_000300: 1.700667e6

VQSLOD
type: SiteQuality
SIO_000300: -2.457e0

GenotypeQuality
all individuals: 52
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3211
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.896091044037604e-5
allele num: 10105
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47820
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6611
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9293
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.91e-1

MQ
type: SiteQuality
SIO_000300: 5.756e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e0

DP
type: SiteQuality
SIO_000300: 1.699781e6

QD
type: SiteQuality
SIO_000300: 1.577e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.11e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.258e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.033e0

FS
type: SiteQuality
SIO_000300: 2.344e0

GenotypeQuality
all individuals: 85
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3155
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47661
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.998000399920016e-5
allele num: 10002
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6575
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9276
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.681205e6

MQ
type: SiteQuality
SIO_000300: 6.003e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.06e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.84e0

QD
type: SiteQuality
SIO_000300: 3.404e1

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1509
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2716
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7737
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5199
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 358
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.002405773857257e-4
allele num: 9976
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6573
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8369
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47622
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.673265e6

MQ
type: SiteQuality
SIO_000300: 5.805e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.031e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.108e0

VQSLOD
type: SiteQuality
SIO_000300: 4.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e0

QD
type: SiteQuality
SIO_000300: 1.775e1

GenotypeQuality
all individuals: 238
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variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1392
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27447
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1542
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1633
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3578
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6533
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9243
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.110461557942722e-5
allele num: 47383
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8241
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4515
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9814
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.777e1

DP
type: SiteQuality
SIO_000300: 1.624569e6

FS
type: SiteQuality
SIO_000300: 2.078e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

VQSLOD
type: SiteQuality
SIO_000300: -1.854e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

QD
type: SiteQuality
SIO_000300: 1.185e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3862
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8771
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7729
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.298850574712644e-5
allele num: 43500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.315e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

DP
type: SiteQuality
SIO_000300: 1.524598e6

MQ
type: SiteQuality
SIO_000300: 5.906e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.614e1

GenotypeQuality
all individuals: 3121
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1147
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43581
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7750
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 5.686988171064604e-4
allele num: 8792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 573
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.525957e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

MQ
type: SiteQuality
SIO_000300: 5.629e1

VQSLOD
type: SiteQuality
SIO_000300: -9.451000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.52e0

QD
type: SiteQuality
SIO_000300: 1.281e1

MQRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 5471
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1784
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43624
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.137915339098771e-4
allele num: 8788
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.413709872073377e-4
allele num: 8286
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7757
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 571
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.534258e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

MQ
type: SiteQuality
SIO_000300: 5.714e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-2

QD
type: SiteQuality
SIO_000300: 2.212e1

VQSLOD
type: SiteQuality
SIO_000300: -9.888e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.04e-1

GenotypeQuality
all individuals: 3893
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21015
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1790
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1119
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variant carriers: 0

GenotypeQuality
all individuals: 5466
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8795
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.606683804627249e-4
allele num: 6224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43727
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4359
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.619e1

QD
type: SiteQuality
SIO_000300: 1.609e1

DP
type: SiteQuality
SIO_000300: 1.561972e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.495e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.342000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.47e-1

GenotypeQuality
all individuals: 306
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 7.5e0
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GenotypeQuality
all individuals: 38440
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 479
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GenotypeQuality
all individuals: 716
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9157
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.151787059152626e-5
allele num: 46473
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4469
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

FS
type: SiteQuality
SIO_000300: 5.994e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.574e0

QD
type: SiteQuality
SIO_000300: 1.426e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

DP
type: SiteQuality
SIO_000300: 1.760881e6

VQSLOD
type: SiteQuality
SIO_000300: -1.657e0

MQ
type: SiteQuality
SIO_000300: 5.759e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-1

GenotypeQuality
all individuals: 1367
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 484
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GenotypeQuality
all individuals: 718
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6591
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4503
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.248511099079588e-4
allele num: 9235
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47197
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.80231e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.62e-1

MQ
type: SiteQuality
SIO_000300: 5.718e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.77e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-1

QD
type: SiteQuality
SIO_000300: 2.064e1

VQSLOD
type: SiteQuality
SIO_000300: 6.36e-1

GenotypeQuality
all individuals: 1594
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 42980
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 718
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GenotypeQuality
all individuals: 1127
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9261
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.17799505242078e-4
allele num: 8489
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47521
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6611
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

VQSLOD
type: SiteQuality
SIO_000300: -4.823e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.56e-1

QD
type: SiteQuality
SIO_000300: 1.359e1

MQ
type: SiteQuality
SIO_000300: 5.505e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.92e-2

FS
type: SiteQuality
SIO_000300: 6.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.8e0

DP
type: SiteQuality
SIO_000300: 1.821859e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 11

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6621
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8499
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.935256625293526e-4
allele num: 47696
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.66e-1

MQ
type: SiteQuality
SIO_000300: 5.349e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.353e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.705e1

VQSLOD
type: SiteQuality
SIO_000300: 1.594e1

FS
type: SiteQuality
SIO_000300: 5.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.68e-1

DP
type: SiteQuality
SIO_000300: 1.831762e6

GenotypeQuality
all individuals: 4991
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.091262704420929e-5
allele num: 47818
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.508750754375377e-4
allele num: 6628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10006
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8505
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.257e1

MQRankSum
type: SiteQuality
SIO_000300: 5.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.69e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e-1

FS
type: SiteQuality
SIO_000300: 6.822e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

QD
type: SiteQuality
SIO_000300: 2.982e1

DP
type: SiteQuality
SIO_000300: 1.838089e6

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9293
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.090563197725467e-5
allele num: 47834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.838569e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 5.519e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.81e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.66e0

QD
type: SiteQuality
SIO_000300: 2.986e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.317e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10031
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47869
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.175640724194686e-4
allele num: 8506
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

FS
type: SiteQuality
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ClippingRankSum
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DP
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BaseQRankSum
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VQSLOD
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MQRankSum
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SIO_000300: -3.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.159e1

MQ
type: SiteQuality
SIO_000300: 5.415e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.71e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 40

Other
type: Population
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allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10008
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African
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allele count: 40
allele frequency: 4.706989879971758e-3
allele num: 8498
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47812
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 3.229278794402583e-4
allele num: 9290
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.363e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.14e-1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

DP
type: SiteQuality
SIO_000300: 1.843101e6

VQSLOD
type: SiteQuality
SIO_000300: 1.074e1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9278
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4514
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.094547891837547e-5
allele num: 47743
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.985e1

VQSLOD
type: SiteQuality
SIO_000300: -3.453e0

QD
type: SiteQuality
SIO_000300: 6.0e-2

DP
type: SiteQuality
SIO_000300: 1.85065e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 8.110000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.945e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.659e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.165e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9277
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6617
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47686
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.784e1

VQSLOD
type: SiteQuality
SIO_000300: -9.089999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.18e-1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.55e-2

MQ
type: SiteQuality
SIO_000300: 5.532e1

DP
type: SiteQuality
SIO_000300: 1.837763e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
SIO_000300: 2.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.16e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.08038029386344e-4
allele num: 9256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6601
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47491
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4509
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9869
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.487e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.85e-1

InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.829449e6

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4288
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.321262766945218e-5
allele num: 43080
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Other
type: Population
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allele num: 580
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-2

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
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MQ
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6140
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 43079
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8507
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

African
type: Population
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allele frequency: 3.644757623618029e-4
allele num: 8231
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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BaseQRankSum
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QD
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FS
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.386520929788554e-5
allele num: 41902
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Latino
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Other
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European (Finnish)
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African
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MQ
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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QD
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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DP
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 1.232741617357002e-4
allele num: 8112
num of homozygotes: 0

African
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Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
type: Population
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num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41902
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.446954e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.344e0

QD
type: SiteQuality
SIO_000300: 3.82e0

VQSLOD
type: SiteQuality
SIO_000300: -4.198e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.545e0

MQ
type: SiteQuality
SIO_000300: 3.63e1

FS
type: SiteQuality
SIO_000300: 7.78e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.18e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2328
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1557
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 301
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 121
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 6.392499467291711e-4
allele num: 4693
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5710
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.232e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.54e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.466e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.446e1

MQRankSum
type: SiteQuality
SIO_000300: -6.95e-1

DP
type: SiteQuality
SIO_000300: 3.18802e5

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 648
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2249
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 121
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 301
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5711
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.284521515735388e-3
allele num: 1557
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4693
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.71e-2

QD
type: SiteQuality
SIO_000300: 1.716e1

DP
type: SiteQuality
SIO_000300: 3.20303e5

MQRankSum
type: SiteQuality
SIO_000300: -3.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.91e-1

FS
type: SiteQuality
SIO_000300: 1.4174e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.57e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.249e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2556
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.747030048916841e-4
allele num: 5724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.547e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.57e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.26547e5

QD
type: SiteQuality
SIO_000300: 2.699e1

GenotypeQuality
all individuals: 712
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2569
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.110595187842972e-4
allele num: 4738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5735
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.619e0

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.06e-2

QD
type: SiteQuality
SIO_000300: 1.334e1

MQ
type: SiteQuality
SIO_000300: 5.935e1

VQSLOD
type: SiteQuality
SIO_000300: -1.044e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-1

DP
type: SiteQuality
SIO_000300: 3.28728e5

GenotypeQuality
all individuals: 599
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2573
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
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variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1015
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5739
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.110595187842972e-4
allele num: 4738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1566
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.99e-2

DP
type: SiteQuality
SIO_000300: 3.2881e5

QD
type: SiteQuality
SIO_000300: 3.205e1

VQSLOD
type: SiteQuality
SIO_000300: -1.41e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.111486486486487e-4
allele num: 4736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5779
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.15e-1

QD
type: SiteQuality
SIO_000300: 3.19e1

MQ
type: SiteQuality
SIO_000300: 5.931e1

DP
type: SiteQuality
SIO_000300: 3.36044e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.03e-2

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6473
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.724435247456458e-4
allele num: 5799
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1579
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.469e0

MQ
type: SiteQuality
SIO_000300: 5.99e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.36e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.54e-1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.73e-1

QD
type: SiteQuality
SIO_000300: 1.314e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.39e-1

DP
type: SiteQuality
SIO_000300: 3.38088e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 12
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 247
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.711449597809344e-4
allele num: 5843
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

FS
type: SiteQuality
SIO_000300: 3.678e0

DP
type: SiteQuality
SIO_000300: 3.41989e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.906e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.51e-1

QD
type: SiteQuality
SIO_000300: 1.067e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.86e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5854
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1600
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 4.0e-3
allele num: 250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.144e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.09e-2

FS
type: SiteQuality
SIO_000300: 1.282e0

DP
type: SiteQuality
SIO_000300: 3.43538e5

QD
type: SiteQuality
SIO_000300: 1.242e1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
all individuals: 106
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 520
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GenotypeQuality
all individuals: 2577
bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5932
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 329
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South Asian
type: Population
allele count: 1
allele frequency: 2.111932418162619e-4
allele num: 4735
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1629
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.77e-2

DP
type: SiteQuality
SIO_000300: 3.50969e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.25e-1

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.508e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.02e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.414e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 986
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2578
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 394
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 711
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5993
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1661
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4735
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.985074626865672e-3
allele num: 335
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.153e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.321e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.510000000000001e-2

DP
type: SiteQuality
SIO_000300: 3.61474e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.25e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 1.004e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1636
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 511
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 6.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 3.937007874015748e-3
allele num: 254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 343
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.112824846820199e-4
allele num: 4733
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 2.396644697423607e-3
allele num: 1669
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 61
allele frequency: 1.014468651255613e-2
allele num: 6013
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.13e0

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

DP
type: SiteQuality
SIO_000300: 3.65624e5

QD
type: SiteQuality
SIO_000300: 1.721e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.77e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

GenotypeQuality
all individuals: 16489
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2576
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2631
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 349
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.965e0

DP
type: SiteQuality
SIO_000300: 3.67169e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

VQSLOD
type: SiteQuality
SIO_000300: -2.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.77e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.51e-1

QD
type: SiteQuality
SIO_000300: 1.156e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.513e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

GenotypeQuality
all individuals: 709
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2577
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 310
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2597
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1691
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6054
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 353
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.112378538234052e-4
allele num: 4734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 257
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.028e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.4e-2

DP
type: SiteQuality
SIO_000300: 3.69428e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.94e-2

GenotypeQuality
all individuals: 710
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18992
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2575
bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6095
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1711
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.75924e5

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

QD
type: SiteQuality
SIO_000300: 1.702e1

VQSLOD
type: SiteQuality
SIO_000300: -1.068e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.149999999999999e-2

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 9

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 8

GenotypeQuality
all individuals: 397
bin: 9.25e1
variant carriers: 45

GenotypeQuality
all individuals: 666
bin: 7.75e1
variant carriers: 27

GenotypeQuality
all individuals: 477
bin: 7.25e1
variant carriers: 25

GenotypeQuality
all individuals: 2395
bin: 6.25e1
variant carriers: 52

GenotypeQuality
all individuals: 919
bin: 6.75e1
variant carriers: 50

Other
type: Population
allele count: 11
allele frequency: 7.857142857142857e-2
allele num: 140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

Latino
type: Population
allele count: 17
allele frequency: 6.563706563706563e-2
allele num: 259
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 2
allele frequency: 1.538461538461539e-1
allele num: 13
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 877
allele frequency: 1.397832323876315e-1
allele num: 6274
num of homozygotes: 50

South Asian
type: Population
allele count: 199
allele frequency: 4.200084423807514e-2
allele num: 4738
num of homozygotes: 2

African
type: Population
allele count: 48
allele frequency: 2.701181767023073e-2
allele num: 1777
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.28e0

FS
type: SiteQuality
SIO_000300: 5.42e-1

QD
type: SiteQuality
SIO_000300: 1.905e1

DP
type: SiteQuality
SIO_000300: 4.24698e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 683
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2643
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 271
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6407
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 144
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1924
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 409
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.916e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.261e1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.28e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

DP
type: SiteQuality
SIO_000300: 4.28796e5

GenotypeQuality
all individuals: 317
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 374
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2647
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 697
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4765
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 347
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 503
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.230657989877079e-4
allele num: 6915
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

FS
type: SiteQuality
SIO_000300: 2.444e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.914e-1

DP
type: SiteQuality
SIO_000300: 4.92214e5

QD
type: SiteQuality
SIO_000300: 1.674e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 527
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18882
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2103
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2449
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2920
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32867
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2118
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 405
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.09782e5

VQSLOD
type: SiteQuality
SIO_000300: 6.18e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

QD
type: SiteQuality
SIO_000300: 2.285e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 3309
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 2839
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 97
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12936
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 300
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 9.75e1
variant carriers: 38

GenotypeQuality
all individuals: 673
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 9.48316737790422e-4
allele num: 2109
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7230
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.236769703835572e-4
allele num: 6179
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7023
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 405
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 43
allele frequency: 1.307507525770061e-3
allele num: 32887
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5010
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

FS
type: SiteQuality
SIO_000300: 2.853e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.0961e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.06e-2

QD
type: SiteQuality
SIO_000300: 1.517e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

GenotypeQuality
all individuals: 2413
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13036
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 124
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1430
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 9.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 401
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6171
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7013
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7217
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5006
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.039144176999757e-5
allele num: 32904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

DP
type: SiteQuality
SIO_000300: 9.09084e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.795e1

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 660
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2448
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 545
bin: 9.75e1
variant carriers: 32

GenotypeQuality
all individuals: 2888
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13240
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1761
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 2

Latino
type: Population
allele count: 3
allele frequency: 4.27715996578272e-4
allele num: 7014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5013
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 405
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2096
num of homozygotes: 0

African
type: Population
allele count: 36
allele frequency: 5.844155844155844e-3
allele num: 6160
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.26e-1

QD
type: SiteQuality
SIO_000300: 1.379e1

DP
type: SiteQuality
SIO_000300: 9.09331e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3399
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20097
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2366
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 9.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32821
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6159
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5016
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7006
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2097
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQRankSum
type: SiteQuality
SIO_000300: -1.38e0

VQSLOD
type: SiteQuality
SIO_000300: -1.199e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

QD
type: SiteQuality
SIO_000300: 1.717e1

DP
type: SiteQuality
SIO_000300: 9.11097e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2857
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2170
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 640
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.118266083391966e-5
allele num: 32689
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4989
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6993
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2075
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6147
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7197
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.753e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.303e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.65e-1

DP
type: SiteQuality
SIO_000300: 9.11491e5

QD
type: SiteQuality
SIO_000300: 1.633e1

GenotypeQuality
all individuals: 21025
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 508
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2244
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2041
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6978
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32534
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.395478649176668e-4
allele num: 7166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 401
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.078e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.348e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.73e-1

DP
type: SiteQuality
SIO_000300: 9.15705e5

GenotypeQuality
all individuals: 225
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3201
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1240
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 401
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6128
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2041
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.07370750599373e-5
allele num: 32534
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.348e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

DP
type: SiteQuality
SIO_000300: 9.15705e5

FS
type: SiteQuality
SIO_000300: 5.078e0

MQRankSum
type: SiteQuality
SIO_000300: 4.73e-1

GenotypeQuality
all individuals: 868
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 576
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1578
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16004
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.183527083848628e-5
allele num: 32344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2045
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7149
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6969
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4967
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

QD
type: SiteQuality
SIO_000300: 1.516e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

DP
type: SiteQuality
SIO_000300: 9.20428e5

VQSLOD
type: SiteQuality
SIO_000300: -6.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 2710
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15485
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.103662321539417e-5
allele num: 32220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2039
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4953
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7126
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

DP
type: SiteQuality
SIO_000300: 9.21512e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -5.306e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.06e-1

QD
type: SiteQuality
SIO_000300: 7.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

GenotypeQuality
all individuals: 689
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 9.75e1
variant carriers: 7

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2015
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4938
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31999
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 401
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 9.863322530646753e-4
allele num: 7097
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6903
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 1.624e1

DP
type: SiteQuality
SIO_000300: 9.33584e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 5.279e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.15e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

GenotypeQuality
all individuals: 18603
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4934
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7087
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31989
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6897
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6029
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 399
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2019
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

QD
type: SiteQuality
SIO_000300: 2.715e1

DP
type: SiteQuality
SIO_000300: 9.36866e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2077
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19867
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7073
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2004
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31737
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5990
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

QD
type: SiteQuality
SIO_000300: 6.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.355e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.45e-1

DP
type: SiteQuality
SIO_000300: 9.41179e5

GenotypeQuality
all individuals: 497
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1995
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5982
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.31891567407033e-5
allele num: 31651
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7072
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 401
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.359e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

QD
type: SiteQuality
SIO_000300: 1.079e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.303e-1

DP
type: SiteQuality
SIO_000300: 9.36802e5

MQRankSum
type: SiteQuality
SIO_000300: 7.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

GenotypeQuality
all individuals: 633
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1951
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2063
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 397
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6753
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.421164157061675e-5
allele num: 31147
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1936
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

MQ
type: SiteQuality
SIO_000300: 5.915e1

QD
type: SiteQuality
SIO_000300: 1.095e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 9.28234e5

FS
type: SiteQuality
SIO_000300: 2.959e0

MQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
all individuals: 111
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2063
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4804
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.480823337775803e-4
allele num: 6753
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 397
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5930
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31147
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1936
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

QD
type: SiteQuality
SIO_000300: 1.095e1

MQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

DP
type: SiteQuality
SIO_000300: 9.28234e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

FS
type: SiteQuality
SIO_000300: 2.959e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
all individuals: 336
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.229035487100004e-5
allele num: 30969
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5905
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4780
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6973
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1918
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 1.791e0

QD
type: SiteQuality
SIO_000300: 1.136e1

DP
type: SiteQuality
SIO_000300: 9.2479e5

GenotypeQuality
all individuals: 345
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18230
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6939
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.115059221658206e-4
allele num: 4728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6671
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30677
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

QD
type: SiteQuality
SIO_000300: 1.72e1

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.13e0

DP
type: SiteQuality
SIO_000300: 9.15646e5

GenotypeQuality
all individuals: 496
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1780
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6627
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.44654997830175e-4
allele num: 6913
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1870
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.832e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.818e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

DP
type: SiteQuality
SIO_000300: 9.10714e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e0

MQRankSum
type: SiteQuality
SIO_000300: -8.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.58e0

VQSLOD
type: SiteQuality
SIO_000300: -3.498e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.514e1

GenotypeQuality
all individuals: 1248
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 108
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.127659574468085e-4
allele num: 4700
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.437016669530847e-4
allele num: 5819
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 393
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.31726272805111e-4
allele num: 30366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1856
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6895
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.152e0

QD
type: SiteQuality
SIO_000300: 1.106e1

FS
type: SiteQuality
SIO_000300: 3.526e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.06713e5

GenotypeQuality
all individuals: 110
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1734
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2244
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1824
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 8.71383757406762e-4
allele num: 5738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6477
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6794
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

FS
type: SiteQuality
SIO_000300: 2.5059e1

DP
type: SiteQuality
SIO_000300: 8.81876e5

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.582e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

QD
type: SiteQuality
SIO_000300: 1.297e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.95e-1

GenotypeQuality
all individuals: 251
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27466
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1739
bin: 3.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 385
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.387648633083776e-5
allele num: 29519
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6763
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.399999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.12e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.75666e5

MQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

GenotypeQuality
all individuals: 1766
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4501
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6347
num of homozygotes: 0