22-21068874-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068874
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068874
    reference: chr 22
allele count: 4
allele frequency: 3.315210184325686e-5
allele num: 120656
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.395+42G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.986+42G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5216+42G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1763+42G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5390+42G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.567+42G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.210+42G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1646+42G>A
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5946
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP

22-21068875-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068875
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068875
    reference: chr 22
allele count: 7
allele frequency: 5.800367909050231e-5
allele num: 120682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5216+41C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1646+41C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.567+41C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1763+41C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.395+41C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.210+41C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.986+41C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5390+41C>T
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5953
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

22-21068878-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068878
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068878
    reference: chr 22
allele count: 46349
allele frequency: 3.837218929032685e-1
allele num: 120788
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.986+38G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5390+38G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1646+38G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1763+38G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5216+38G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.210+38G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.567+38G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.395+38G>A
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.5e0
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 4330
  bin: 5.25e1
  variant carriers: 4201
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 3.25e1
  variant carriers: 925
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 3.75e1
  variant carriers: 1689
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 8.25e1
  variant carriers: 1278
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 6.75e1
  variant carriers: 3200
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 7.25e1
  variant carriers: 2455
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 6.25e1
  variant carriers: 3834
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13310
  bin: 2.25e1
  variant carriers: 215
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 9.25e1
  variant carriers: 671
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 4.75e1
  variant carriers: 3628
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 4.25e1
  variant carriers: 2793
genotype depth: GenotypeDepth
  all individuals: 7518
  bin: 2.75e1
  variant carriers: 406
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 7.75e1
  variant carriers: 1811
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 9.75e1
  variant carriers: 4260
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 5.75e1
  variant carriers: 4428
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 8.75e1
  variant carriers: 935
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 9.25e1
  variant carriers: 135
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 7.25e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 5
num of homozygotes: 9366
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum

22-21068879-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068879
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068879
    reference: chr 22
allele count: 1
allele frequency: 8.279927799029592e-6
allele num: 120774
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.395+37C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5390+37C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.567+37C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1763+37C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.986+37C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5216+37C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1646+37C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.210+37C>T
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4199
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43055
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1700
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

22-21068880-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068880
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068881
    reference: chr 22
allele count: 4
allele frequency: 3.312135665076842e-5
allele num: 120768
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1646+35_1646+36insA
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.210+35_210+36insA
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.567+35_567+36insA
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.395+35_395+36insA
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1763+35_1763+36insA
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5390+35_5390+36insA
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5216+35_5216+36insA
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.986+35_986+36insA
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 26538
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43073
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

22-21068880-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068880
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068880
    reference: chr 22
allele count: 2
allele frequency: 1.656067832538421e-5
allele num: 120768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.395+36G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1646+36G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.986+36G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5216+36G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5390+36G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.567+36G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1763+36G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.210+36G>A
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1712
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

22-21068881-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068881
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068881
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 120758
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5216+35C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.986+35C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.210+35C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.567+35C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5390+35C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.395+35C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1646+35C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1763+35C>T
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7705
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

22-21068881-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068881
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068881
    reference: chr 22
allele count: 527
allele frequency: 4.364100101028503e-3
allele num: 120758
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5216+35C>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.210+35C>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1646+35C>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.986+35C>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.395+35C>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.567+35C>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5390+35C>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1763+35C>A
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 26551
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 4.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 8158
  bin: 3.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 9.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 19655
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7705
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43087
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 4
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

22-21068888-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068888
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068888
    reference: chr 22
allele count: 1
allele frequency: 8.279790686891435e-6
allele num: 120776
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5390+28A>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.210+28A>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5216+28A>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.567+28A>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1646+28A>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.986+28A>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.395+28A>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1763+28A>G
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

22-21068891-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068891
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068891
    reference: chr 22
allele count: 17
allele frequency: 1.406935363734172e-4
allele num: 120830
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.986+25C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5216+25C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5390+25C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1763+25C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.567+25C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.395+25C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.210+25C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1646+25C>T
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8227
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43615
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

22-21068892-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068892
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068892
    reference: chr 22
allele count: 2
allele frequency: 1.655218074981379e-5
allele num: 120830
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.395+24C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.210+24C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.567+24C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1763+24C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.986+24C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5390+24C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5216+24C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1646+24C>G
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8223
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7789
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

22-21068893-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068893
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068893
    reference: chr 22
allele count: 2
allele frequency: 1.655108492361674e-5
allele num: 120838
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1646+23C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.210+23C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.395+23C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.986+23C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.567+23C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5390+23C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5216+23C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1763+23C>T
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7787
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1694
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

22-21068893-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068893
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068893
    reference: chr 22
allele count: 1
allele frequency: 8.275542461808372e-6
allele num: 120838
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.986+23C>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1763+23C>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.395+23C>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5216+23C>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.210+23C>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.567+23C>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1646+23C>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5390+23C>A
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ

22-21068901-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068901
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068901
    reference: chr 22
allele count: 1
allele frequency: 8.278693953241936e-6
allele num: 120792
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5216+15C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.986+15C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1763+15C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5390+15C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.395+15C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.567+15C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.210+15C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1646+15C>T
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3699
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

22-21068907-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068907
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068907
    reference: chr 22
allele count: 1
allele frequency: 8.281847845891375e-6
allele num: 120746
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1763+9C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.210+9C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.986+9C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1646+9C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.395+9C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.567+9C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5390+9C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5216+9C>T
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43709
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/22-21068909-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068909
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068909
    reference: chr 22
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1646+7G>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.986+7G>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5216+7G>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5390+7G>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.395+7G>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1763+7G>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.567+7G>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.210+7G>T
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 8.25e1
  variant carriers: 0
hgvs: c.5390+7G>T
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

22-21068909-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068909
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068909
    reference: chr 22
allele count: 22
allele frequency: 1.822127250741275e-4
allele num: 120738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1646+7G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.210+7G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5216+7G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.395+7G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1763+7G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.567+7G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5390+7G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.986+7G>A
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8189
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26849
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1681
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
hgvs: c.5390+7G>A
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

22-21068910-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068910
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068910
    reference: chr 22
allele count: 2
allele frequency: 1.656753756689143e-5
allele num: 120718
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.395+6C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.986+6C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1646+6C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5390+6C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5216+6C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.567+6C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1763+6C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.210+6C>T
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1682
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3678
  bin: 9.75e1
  variant carriers: 2
hgvs: c.5390+6C>T
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD

22-21068912-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068912
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068912
    reference: chr 22
allele count: 14
allele frequency: 1.159823706796567e-4
allele num: 120708
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5216+4G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.395+4G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.986+4G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.567+4G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1646+4G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1763+4G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5390+4G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.210+4G>A
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1683
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3667
  bin: 9.75e1
  variant carriers: 7
hgvs: c.5390+4G>A
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

22-21068913-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068913
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068913
    reference: chr 22
allele count: 1
allele frequency: 8.284455048546906e-6
allele num: 120708
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1763+3G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1646+3G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.567+3G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.986+3G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.395+3G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5216+3G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.210+3G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5390+3G>A
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7744
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1683
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
hgvs: c.5390+3G>A
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

22-21068924-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068924
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068924
    reference: chr 22
allele count: 13
allele frequency: 1.077925739208305e-4
allele num: 120602
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5208G>A
  hgvsp: ENST00000572273.1:c.5208G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1638G>A
  hgvsp: ENST00000414196.3:c.1638G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.978G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.559G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.387G>A
  hgvsp: ENST00000399213.2:c.387G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5382G>A
  hgvsp: ENST00000255882.6:c.5382G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1755G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.202G>A
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7719
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro1794Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

22-21068925-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068925
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068925
    reference: chr 22
allele count: 1
allele frequency: 8.2917364554485e-6
allele num: 120602
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.201C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5207C>T
  hgvsp: ENSP00000458238.1:p.Pro1736Leu
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5381C>T
  hgvsp: ENSP00000255882.6:p.Pro1794Leu
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.386C>T
  hgvsp: ENSP00000382162.2:p.Pro129Leu
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.977C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1637C>T
  hgvsp: ENSP00000402981.3:p.Pro546Leu
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1754C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.558C>T
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro1794Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum

22-21068926-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068926
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068926
    reference: chr 22
allele count: 1
allele frequency: 8.2917364554485e-6
allele num: 120602
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.976C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1753C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.200C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.385C>T
  hgvsp: ENSP00000382162.2:p.Pro129Ser
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5206C>T
  hgvsp: ENSP00000458238.1:p.Pro1736Ser
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.557C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1636C>T
  hgvsp: ENSP00000402981.3:p.Pro546Ser
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5380C>T
  hgvsp: ENSP00000255882.6:p.Pro1794Ser
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3641
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro1794Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

22-21068933-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068933
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068933
    reference: chr 22
allele count: 9
allele frequency: 7.467516304077264e-5
allele num: 120522
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1746T>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.550T>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5373T>A
  hgvsp: ENST00000255882.6:c.5373T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.378T>A
  hgvsp: ENST00000399213.2:c.378T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.193T>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5199T>A
  hgvsp: ENST00000572273.1:c.5199T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1629T>A
  hgvsp: ENST00000414196.3:c.1629T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.969T>A
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8119
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43844
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3637
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser1791Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

22-21068944-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068944
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068944
    reference: chr 22
allele count: 1
allele frequency: 8.317530026283395e-6
allele num: 120228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5188G>A
  hgvsp: ENSP00000458238.1:p.Asp1730Asn
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1618G>A
  hgvsp: ENSP00000402981.3:p.Asp540Asn
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1735G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.182G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.958G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.367G>A
  hgvsp: ENSP00000382162.2:p.Asp123Asn
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5362G>A
  hgvsp: ENSP00000255882.6:p.Asp1788Asn
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.539G>A
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1624
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7619
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp1788Asn
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum

22-21068945-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068945
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068945
    reference: chr 22
allele count: 1
allele frequency: 8.317114959162966e-6
allele num: 120234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5187C>T
  hgvsp: ENST00000572273.1:c.5187C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.181C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1734C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.366C>T
  hgvsp: ENST00000399213.2:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5361C>T
  hgvsp: ENST00000255882.6:c.5361C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.957C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.538C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1617C>T
  hgvsp: ENST00000414196.3:c.1617C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43470
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile1787Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/22-21068946-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068946
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068946
    reference: chr 22
allele count: 1
allele frequency: 8.319467554076538e-6
allele num: 120200
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.365T>G
  hgvsp: ENSP00000382162.2:p.Ile122Ser
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5186T>G
  hgvsp: ENSP00000458238.1:p.Ile1729Ser
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1616T>G
  hgvsp: ENSP00000402981.3:p.Ile539Ser
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5360T>G
  hgvsp: ENSP00000255882.6:p.Ile1787Ser
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.956T>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1733T>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.537T>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.180T>G
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7612
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile1787Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

22-21068947-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068947
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068947
    reference: chr 22
allele count: 3
allele frequency: 2.496795778750603e-5
allele num: 120154
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1732A>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.536A>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5185A>G
  hgvsp: ENSP00000458238.1:p.Ile1729Val
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1615A>G
  hgvsp: ENSP00000402981.3:p.Ile539Val
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.179A>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.955A>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5359A>G
  hgvsp: ENSP00000255882.6:p.Ile1787Val
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.364A>G
  hgvsp: ENSP00000382162.2:p.Ile122Val
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile1787Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

22-21068951-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068951
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068951
    reference: chr 22
allele count: 1
allele frequency: 8.333472224537076e-6
allele num: 119998
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.175G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1611G>A
  hgvsp: ENST00000414196.3:c.1611G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1728G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5355G>A
  hgvsp: ENST00000255882.6:c.5355G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.360G>A
  hgvsp: ENST00000399213.2:c.360G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5181G>A
  hgvsp: ENST00000572273.1:c.5181G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.951G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.532G>A
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7558
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu1785Leu
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD

22-21068957-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068957
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068957
    reference: chr 22
allele count: 2
allele frequency: 1.670760028737073e-5
allele num: 119706
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5175T>C
  hgvsp: ENST00000572273.1:c.5175T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1605T>C
  hgvsp: ENST00000414196.3:c.1605T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.945T>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.354T>C
  hgvsp: ENST00000399213.2:c.354T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.169T>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5349T>C
  hgvsp: ENST00000255882.6:c.5349T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.526T>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1722T>C
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7776
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile1783Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD

22-21068965-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068965
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068965
    reference: chr 22
allele count: 1
allele frequency: 8.399690891375198e-6
allele num: 119052
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.161G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5167G>A
  hgvsp: ENSP00000458238.1:p.Glu1723Lys
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1714G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1597G>A
  hgvsp: ENSP00000402981.3:p.Glu533Lys
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.937G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.346G>A
  hgvsp: ENSP00000382162.2:p.Glu116Lys
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5341G>A
  hgvsp: ENSP00000255882.6:p.Glu1781Lys
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.518G>A
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1942
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41973
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu1781Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP

22-21068986-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068986
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068986
    reference: chr 22
allele count: 1
allele frequency: 8.643490587238751e-6
allele num: 115694
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.497T>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1576T>C
  hgvsp: ENSP00000402981.3:p.Cys526Arg
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.325T>C
  hgvsp: ENSP00000382162.2:p.Cys109Arg
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5320T>C
  hgvsp: ENSP00000255882.6:p.Cys1774Arg
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1693T>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.140T>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5146T>C
  hgvsp: ENSP00000458238.1:p.Cys1716Arg
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.916T>C
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5794
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3566
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Cys1774Arg
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

22-21068996-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21068996
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21068996
    reference: chr 22
allele count: 3
allele frequency: 2.647931083180342e-5
allele num: 113296
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.495-8C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.323-8C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5144-8C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5318-8C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1574-8C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.914-8C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1691-8C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.138-8C>T
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16253
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9042
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5193
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31559
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 3.75e1
  variant carriers: 0
hgvs: c.5318-8C>T
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

22-21069000-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21069000
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21069000
    reference: chr 22
allele count: 1
allele frequency: 8.925861791956013e-6
allele num: 112034
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.138-12G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.495-12G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1691-12G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1574-12G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5144-12G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5318-12G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.323-12G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.914-12G>A
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12688
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3584
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4492
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11277
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS

22-21069001-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21069001
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21069001
    reference: chr 22
allele count: 63
allele frequency: 5.620884709409183e-4
allele num: 112082
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1574-13T>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.138-13T>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5318-13T>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.914-13T>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.495-13T>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1691-13T>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5144-13T>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.323-13T>C
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14648
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12710
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16450
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11341
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3589
  bin: 9.75e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum

22-21069007-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21069007
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21069007
    reference: chr 22
allele count: 1
allele frequency: 9.048627323235065e-6
allele num: 110514
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1691-19T>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1574-19T>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.495-19T>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.138-19T>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.323-19T>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5318-19T>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.914-19T>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5144-19T>C
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4815
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17091
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4434
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5510
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

22-21069018-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21069018
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21069018
    reference: chr 22
allele count: 4
allele frequency: 3.677755098288005e-5
allele num: 108762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.138-30C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.323-30C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.495-30C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5318-30C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5144-30C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.914-30C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1691-30C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1574-30C>T
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9997
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8747
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3547
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15878
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

22-21069019-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21069019
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21069019
    reference: chr 22
allele count: 1
allele frequency: 9.205390676780322e-6
allele num: 108632
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.138-31A>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.914-31A>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.323-31A>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.495-31A>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1691-31A>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5144-31A>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5318-31A>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1574-31A>C
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5519
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9887
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7608
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

22-21069024-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21069024
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21069024
    reference: chr 22
allele count: 7
allele frequency: 6.514657980456026e-5
allele num: 107450
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.495-36C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.914-36C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1574-36C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.138-36C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5144-36C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1691-36C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.323-36C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5318-36C>T
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5955
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7989
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20864
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12463
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8486
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5345
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12727
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5940
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

22-21069030-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21069030
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21069030
    reference: chr 22
allele count: 1
allele frequency: 9.512937595129377e-6
allele num: 105120
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.323-42G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.138-42G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.914-42G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.495-42G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5144-42G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1691-42G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1574-42G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5318-42G>A
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16356
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6872
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14813
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7579
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9301
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS

http://identifiers.org/exac.variant/22-21069032-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21069032
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21069032
    reference: chr 22
allele count: 1
allele frequency: 9.585338266587428e-6
allele num: 104326
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1574-44T>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.323-44T>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5318-44T>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1691-44T>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.495-44T>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5144-44T>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.138-44T>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.914-44T>G
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7021
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6140
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

22-21069035-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21069035
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21069035
    reference: chr 22
allele count: 1
allele frequency: 9.72800498073855e-6
allele num: 102796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.138-47C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.495-47C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1574-47C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.323-47C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5318-47C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.914-47C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1691-47C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5144-47C>T
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15979
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19861
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7840
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2939
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

22-21069038-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21069038
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21069038
    reference: chr 22
allele count: 1
allele frequency: 9.87615304086752e-6
allele num: 101254
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1574-50C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.138-50C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.914-50C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1691-50C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5318-50C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.323-50C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.495-50C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5144-50C>T
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15827
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3969
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2879
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/22-21071948-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21071948
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21071948
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 21234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5143+48G>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5317+48G>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.494+48G>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.322+48G>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1690+48G>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.913+48G>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1573+48G>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.137+48G>T
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8988
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36251
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2870
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4173
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

22-21071948-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21071948
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21071948
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 21234
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5317+48G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.137+48G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.494+48G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.913+48G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1573+48G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5143+48G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1690+48G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.322+48G>A
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36251
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8988
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2748
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25307
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

22-21071949-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21071949
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21071949
    reference: chr 22
allele count: 2
allele frequency: 9.255831173639393e-5
allele num: 21608
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.137+47C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5317+47C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.913+47C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.494+47C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5143+47C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.322+47C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1573+47C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1690+47C>T
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9080
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5398
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4365
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5919
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3558
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

22-21071950-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21071950
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21071950
    reference: chr 22
allele count: 1
allele frequency: 4.613823013749193e-5
allele num: 21674
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.494+46G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.137+46G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.322+46G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.913+46G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5317+46G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5143+46G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1690+46G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1573+46G>A
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36094
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27041
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5743
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3221
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4578
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

22-21071955-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21071955
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21071954
    reference: chr 22
allele count: 1
allele frequency: 4.549590536851683e-5
allele num: 21980
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.137+40delC
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5143+40delC
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5317+40delC
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.494+40delC
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.913+40delC
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1573+40delC
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1690+40delC
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.322+40delC
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34925
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3504
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28605
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: AG
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD

22-21071956-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21071956
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21071956
    reference: chr 22
allele count: 1
allele frequency: 4.539676775013619e-5
allele num: 22028
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.494+40C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1690+40C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1573+40C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5143+40C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.913+40C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5317+40C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.137+40C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.322+40C>G
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34662
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2239
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2689
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4524
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

22-21071968-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21071968
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21071968
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 22746
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1690+28A>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.322+28A>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.137+28A>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.913+28A>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5317+28A>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5143+28A>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.494+28A>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1573+28A>T
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 29747
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17378
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2867
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14901
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

22-21071980-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21071980
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21071980
    reference: chr 22
allele count: 1
allele frequency: 4.155930512841825e-5
allele num: 24062
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.322+16C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5143+16C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1690+16C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5317+16C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.494+16C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1573+16C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.137+16C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.913+16C>T
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21843
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24101
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

22-21071992-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21071992
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21071992
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 25836
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1690+4A>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.137+4A>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5317+4A>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.322+4A>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1573+4A>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.913+4A>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.494+4A>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5143+4A>C
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16413
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2910
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30554
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15897
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 7.75e1
  variant carriers: 0
hgvs: c.5317+4A>C
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

22-21072009-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21072009
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21072009
    reference: chr 22
allele count: 4
allele frequency: 1.371271854645184e-4
allele num: 29170
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.481G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5130G>A
  hgvsp: ENST00000572273.1:c.5130G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5304G>A
  hgvsp: ENST00000255882.6:c.5304G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1560G>A
  hgvsp: ENST00000414196.3:c.1560G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1677G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.309G>A
  hgvsp: ENST00000399213.2:c.309G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.900G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.124G>A
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12440
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32940
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32444
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val1768Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

22-21072011-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21072011
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21072011
    reference: chr 22
allele count: 1
allele frequency: 3.406226582192247e-5
allele num: 29358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.307G>C
  hgvsp: ENSP00000382162.2:p.Val103Leu
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5128G>C
  hgvsp: ENSP00000458238.1:p.Val1710Leu
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5302G>C
  hgvsp: ENSP00000255882.6:p.Val1768Leu
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.479G>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.898G>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1558G>C
  hgvsp: ENSP00000402981.3:p.Val520Leu
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1675G>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.122G>C
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12610
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32741
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val1768Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/22-21072023-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21072023
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21072023
    reference: chr 22
allele count: 1
allele frequency: 3.439735828288387e-5
allele num: 29072
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.886G>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5116G>T
  hgvsp: ENSP00000458238.1:p.Ala1706Ser
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.295G>T
  hgvsp: ENSP00000382162.2:p.Ala99Ser
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.467G>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1663G>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5290G>T
  hgvsp: ENSP00000255882.6:p.Ala1764Ser
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.110G>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1546G>T
  hgvsp: ENSP00000402981.3:p.Ala516Ser
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 15192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29934
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28981
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala1764Ser
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

22-21072024-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21072024
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21072024
    reference: chr 22
allele count: 4
allele frequency: 1.372683596431023e-4
allele num: 29140
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.466G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.885G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1545G>A
  hgvsp: ENST00000414196.3:c.1545G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1662G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.294G>A
  hgvsp: ENST00000399213.2:c.294G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.109G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5289G>A
  hgvsp: ENST00000255882.6:c.5289G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5115G>A
  hgvsp: ENST00000572273.1:c.5115G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15464
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29636
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28779
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15498
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser1763Ser
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

22-21072025-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21072025
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21072025
    reference: chr 22
allele count: 6
allele frequency: 2.062422659150282e-4
allele num: 29092
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.884C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5288C>T
  hgvsp: ENSP00000255882.6:p.Ser1763Leu
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1661C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1544C>T
  hgvsp: ENSP00000402981.3:p.Ser515Leu
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.108C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5114C>T
  hgvsp: ENSP00000458238.1:p.Ser1705Leu
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.465C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.293C>T
  hgvsp: ENSP00000382162.2:p.Ser98Leu
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29362
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15709
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4989
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Ser1763Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/22-21072026-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21072026
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21072026
    reference: chr 22
allele count: 3
allele frequency: 1.026553517656721e-4
allele num: 29224
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.464T>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.883T>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1660T>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1543T>G
  hgvsp: ENSP00000402981.3:p.Ser515Ala
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.292T>G
  hgvsp: ENSP00000382162.2:p.Ser98Ala
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5287T>G
  hgvsp: ENSP00000255882.6:p.Ser1763Ala
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5113T>G
  hgvsp: ENSP00000458238.1:p.Ser1705Ala
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.107T>G
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15964
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16026
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28511
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4987
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser1763Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

22-21072035-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21072035
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21072035
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 28756
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.98G>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5104G>C
  hgvsp: ENSP00000458238.1:p.Ala1702Pro
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.455G>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.283G>C
  hgvsp: ENSP00000382162.2:p.Ala95Pro
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.874G>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1651G>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1534G>C
  hgvsp: ENSP00000402981.3:p.Ala512Pro
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5278G>C
  hgvsp: ENSP00000255882.6:p.Ala1760Pro
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18969
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26001
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4559
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19184
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala1760Pro
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

22-21072039-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21072039
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21072039
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 28556
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5274G>C
  hgvsp: ENSP00000255882.6:p.Lys1758Asn
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.94G>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.870G>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5100G>C
  hgvsp: ENSP00000458238.1:p.Lys1700Asn
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.279G>C
  hgvsp: ENSP00000382162.2:p.Lys93Asn
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.451G>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1647G>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1530G>C
  hgvsp: ENSP00000402981.3:p.Lys510Asn
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24565
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1311
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24075
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20632
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys1758Asn
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

22-21072050-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21072050
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21072050
    reference: chr 22
allele count: 1
allele frequency: 3.674579260674653e-5
allele num: 27214
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5263G>A
  hgvsp: ENSP00000255882.6:p.Asp1755Asn
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5089G>A
  hgvsp: ENSP00000458238.1:p.Asp1697Asn
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1519G>A
  hgvsp: ENSP00000402981.3:p.Asp507Asn
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1636G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.859G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.440G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.268G>A
  hgvsp: ENSP00000382162.2:p.Asp90Asn
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.83G>A
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25632
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18922
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2862
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp1755Asn
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

22-21072051-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21072051
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21072051
    reference: chr 22
allele count: 1
allele frequency: 3.691126531817511e-5
allele num: 27092
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.858C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1635C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.267C>T
  hgvsp: ENST00000399213.2:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5262C>T
  hgvsp: ENST00000255882.6:c.5262C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.439C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5088C>T
  hgvsp: ENST00000572273.1:c.5088C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.82C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1518C>T
  hgvsp: ENST00000414196.3:c.1518C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18300
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2862
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly1754Gly
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

22-21072065-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21072065
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21072065
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 24870
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.253C>G
  hgvsp: ENSP00000382162.2:p.Pro85Ala
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1621C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5248C>G
  hgvsp: ENSP00000255882.6:p.Pro1750Ala
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5074C>G
  hgvsp: ENSP00000458238.1:p.Pro1692Ala
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1504C>G
  hgvsp: ENSP00000402981.3:p.Pro502Ala
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.844C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.68C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.425C>G
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9886
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3668
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1682
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro1750Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

22-21072092-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21072092
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21072092
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 21354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1620-26G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5073-26G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.843-26G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.424-26G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.252-26G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.41G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5247-26G>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1503-26G>A
  variant of: http://identifiers.org/hgnc/8983
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32767
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff

22-21072098-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21072098
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21072098
    reference: chr 22
allele count: 1
allele frequency: 4.719207173194903e-5
allele num: 21190
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1503-32G>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.424-32G>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.252-32G>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5073-32G>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.843-32G>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.35G>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1620-32G>C
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5247-32G>C
  variant of: http://identifiers.org/hgnc/8983
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32022
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6123
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

22-21072107-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21072107
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21072107
    reference: chr 22
allele count: 1
allele frequency: 4.815563902532987e-5
allele num: 20766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1503-41C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.843-41C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5247-41C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.26C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.252-41C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1620-41C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.424-41C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5073-41C>T
  variant of: http://identifiers.org/hgnc/8983
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30912
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22748
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

22-21072116-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21072116
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21072116
    reference: chr 22
allele count: 3
allele frequency: 1.459569913398852e-4
allele num: 20554
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.252-50C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5247-50C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466394
  gene symbol: PI4KA
  hgvsc: ENST00000466394.1:n.17C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1620-50C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.843-50C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5073-50C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.424-50C>T
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1503-50C>T
  variant of: http://identifiers.org/hgnc/8983
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30625
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11112
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

22-21072935-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21072935
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21072935
    reference: chr 22
allele count: 5
allele frequency: 4.121196135966503e-5
allele num: 121324
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5072+46T>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.842+46T>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5246+46T>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1619+46T>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1502+46T>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.251+46T>A
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.423+46T>A
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7078
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3711
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4093
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5802
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12259
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP

22-21072938-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21072938
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21072938
    reference: chr 22
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1619+43C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5072+43C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5246+43C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.251+43C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.842+43C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1502+43C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.423+43C>G
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7076
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26427
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2980
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5797
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12291
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

22-21072940-AAGG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21072940
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21072937
    reference: chr 22
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.423+38_423+40delCCT
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1502+38_1502+40delCCT
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.251+38_251+40delCCT
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5072+38_5072+40delCCT
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.842+38_842+40delCCT
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1619+38_1619+40delCCT
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5246+38_5246+40delCCT
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9503
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4714
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7076
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26429
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3083
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2075
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3713
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: AAGG
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

22-21072942-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21072942
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 21072942
    reference: chr 22
allele count: 239
allele frequency: 1.984225819842258e-3
allele num: 120450
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000466772
  gene symbol: PI4KA
  hgvsc: ENST00000466772.1:n.423+39C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000458238
  ensembl transcript: ENST00000572273
  gene symbol: PI4KA
  hgvsc: ENST00000572273.1:c.5072+39C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000255882
  ensembl transcript: ENST00000255882
  gene symbol: PI4KA
  hgvsc: ENST00000255882.6:c.5246+39C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000492581
  gene symbol: PI4KA
  hgvsc: ENST00000492581.1:n.842+39C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000382162
  ensembl transcript: ENST00000399213
  gene symbol: PI4KA
  hgvsc: ENST00000399213.2:c.251+39C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl transcript: ENST00000477245
  gene symbol: PI4KA
  hgvsc: ENST00000477245.1:n.1619+39C>G
  variant of: http://identifiers.org/hgnc/8983
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241973
  ensembl protein: ENSP00000402981
  ensembl transcript: ENST00000414196
  gene symbol: PI4KA
  hgvsc: ENST00000414196.3:c.1502+39C>G
  variant of: http://identifiers.org/hgnc/8983
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4760
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 8.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 9484
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 8.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6061
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 6.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 3815
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 9.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 7019
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 5.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 7.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 6.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 9803
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2964
  bin: 7.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 12313
  bin: 6.25e1
  variant carriers: 15
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6146
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1516
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2235
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40617
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157943492357573e-4
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.024711896191888e-5
allele num: 66122
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.680542110358181e-5
allele num: 10330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.62e0

MQ
type: SiteQuality
SIO_000300: 5.137e1

MQRankSum
type: SiteQuality
SIO_000300: -4.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.830000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

FS
type: SiteQuality
SIO_000300: 2.465e0

QD
type: SiteQuality
SIO_000300: 1.508e1

DP
type: SiteQuality
SIO_000300: 1.842526e6

GenotypeQuality
all individuals: 2237
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1962
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6153
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40611
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.535970244035199e-5
allele num: 66138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.67305088024763e-5
allele num: 10338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.843245e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

QD
type: SiteQuality
SIO_000300: 1.402e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.106e-1

FS
type: SiteQuality
SIO_000300: 1.116e0

MQ
type: SiteQuality
SIO_000300: 4.946e1

GenotypeQuality
all individuals: 18890
bin: 6.25e1
variant carriers: 39

GenotypeQuality
all individuals: 2020
bin: 6.75e1
variant carriers: 54

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 16

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 11

GenotypeQuality
all individuals: 151
bin: 8.75e1
variant carriers: 67

GenotypeQuality
all individuals: 180
bin: 2.25e1
variant carriers: 16

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 22

GenotypeQuality
all individuals: 67
bin: 3.75e1
variant carriers: 29

GenotypeQuality
all individuals: 271
bin: 8.25e1
variant carriers: 80

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 29

GenotypeQuality
all individuals: 37414
bin: 9.75e1
variant carriers: 36362

GenotypeQuality
all individuals: 452
bin: 7.75e1
variant carriers: 74

Latino
type: Population
allele count: 5904
allele frequency: 5.116117850953206e-1
allele num: 11540
num of homozygotes: 1534

South Asian
type: Population
allele count: 5352
allele frequency: 3.241671714112659e-1
allele num: 16510
num of homozygotes: 924

European (Finnish)
type: Population
allele count: 1500
allele frequency: 2.26997578692494e-1
allele num: 6608
num of homozygotes: 190

European (Non-Finnish)
type: Population
allele count: 24263
allele frequency: 3.662118513599179e-1
allele num: 66254
num of homozygotes: 4515

African
type: Population
allele count: 5030
allele frequency: 4.856149835875652e-1
allele num: 10358
num of homozygotes: 1241

Other
type: Population
allele count: 334
allele frequency: 3.694690265486726e-1
allele num: 904
num of homozygotes: 70

East Asian
type: Population
allele count: 3966
allele frequency: 4.604132807058277e-1
allele num: 8614
num of homozygotes: 892

MQ
type: SiteQuality
SIO_000300: 4.983e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.27e-1

QD
type: SiteQuality
SIO_000300: 1.899e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.28e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.212851e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.29e-1

GenotypeQuality
all individuals: 58
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7707
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.663703131039814e-5
allele num: 10348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66192
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.810255e6

FS
type: SiteQuality
SIO_000300: 1.032e0

MQRankSum
type: SiteQuality
SIO_000300: 9.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.425e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.23e-1

MQ
type: SiteQuality
SIO_000300: 4.35e1

VQSLOD
type: SiteQuality
SIO_000300: -1.939e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.229e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1712
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4194
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7705
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66190
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.469812630117973e-4
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

MQRankSum
type: SiteQuality
SIO_000300: -2.815e0

FS
type: SiteQuality
SIO_000300: 1.6186e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQ
type: SiteQuality
SIO_000300: 4.761e1

DP
type: SiteQuality
SIO_000300: 1.810268e6

QD
type: SiteQuality
SIO_000300: 9.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.294e-1

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43073
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4194
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7705
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66190
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.663703131039814e-5
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.815e0

DP
type: SiteQuality
SIO_000300: 1.810268e6

FS
type: SiteQuality
SIO_000300: 1.6186e1

MQ
type: SiteQuality
SIO_000300: 4.761e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

VQSLOD
type: SiteQuality
SIO_000300: -7.294e-1

QD
type: SiteQuality
SIO_000300: 9.58e0

GenotypeQuality
all individuals: 43087
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1704
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4226
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

QD
type: SiteQuality
SIO_000300: 1.626e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.85e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.44e-1

DP
type: SiteQuality
SIO_000300: 1.810571e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.14e-1

MQ
type: SiteQuality
SIO_000300: 5.105e1

VQSLOD
type: SiteQuality
SIO_000300: 4.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4226
bin: 9.75e1
variant carriers: 524

GenotypeQuality
all individuals: 792
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1704
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 6.63716814159292e-3
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 268
allele frequency: 4.048827652888567e-3
allele num: 66192
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 38
allele frequency: 5.750605326876513e-3
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 6.768516727905628e-4
allele num: 10342
num of homozygotes: 0

Latino
type: Population
allele count: 19
allele frequency: 1.642178046672429e-3
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 188
allele frequency: 1.139255847776027e-2
allele num: 16502
num of homozygotes: 3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.14e-1

DP
type: SiteQuality
SIO_000300: 1.810571e6

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

QD
type: SiteQuality
SIO_000300: 1.626e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.85e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQ
type: SiteQuality
SIO_000300: 5.105e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.44e-1

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43574
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7789
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3723
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 789
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.771e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

DP
type: SiteQuality
SIO_000300: 1.792044e6

FS
type: SiteQuality
SIO_000300: 1.1873e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.562e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.921e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.59e-1

QD
type: SiteQuality
SIO_000300: 1.6e0

MQ
type: SiteQuality
SIO_000300: 4.931e1

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3732
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1694
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7786
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.931620629708325e-4
allele num: 10354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.113462757766976e-4
allele num: 66242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.191e1

FS
type: SiteQuality
SIO_000300: 5.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-3

DP
type: SiteQuality
SIO_000300: 1.792892e6

MQRankSum
type: SiteQuality
SIO_000300: 8.32e-1

QD
type: SiteQuality
SIO_000300: 1.339e1

VQSLOD
type: SiteQuality
SIO_000300: -3.783e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.687e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.6e-2

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1694
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43641
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1704
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3717
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 391
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212121212121212e-4
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.712e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.21e-1

FS
type: SiteQuality
SIO_000300: 6.589e0

MQ
type: SiteQuality
SIO_000300: 5.124e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.05e-1

DP
type: SiteQuality
SIO_000300: 1.792029e6

VQSLOD
type: SiteQuality
SIO_000300: -1.658e0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43682
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3715
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.018867924528302e-5
allele num: 66250
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.63e-1

FS
type: SiteQuality
SIO_000300: 1.401e0

DP
type: SiteQuality
SIO_000300: 1.792034e6

MQ
type: SiteQuality
SIO_000300: 5.208e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.022e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.431e-1

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1694
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3715
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 43682
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7787
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.792034e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.022e1

FS
type: SiteQuality
SIO_000300: 1.401e0

VQSLOD
type: SiteQuality
SIO_000300: -4.431e-1

MQ
type: SiteQuality
SIO_000300: 5.208e1

GenotypeQuality
all individuals: 1690
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1697
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510482750286992e-5
allele num: 66204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

FS
type: SiteQuality
SIO_000300: 1.163e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.876e0

MQ
type: SiteQuality
SIO_000300: 5.235e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.37e-1

QD
type: SiteQuality
SIO_000300: 2.983e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 1.791002e6

VQSLOD
type: SiteQuality
SIO_000300: -6.599e-1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1689
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66166
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.028e0

FS
type: SiteQuality
SIO_000300: 9.08e-1

MQ
type: SiteQuality
SIO_000300: 5.218e1

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.22e0

QD
type: SiteQuality
SIO_000300: 1.379e1

DP
type: SiteQuality
SIO_000300: 1.790272e6

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1683
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43692
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3700
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1681
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7757
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.13e-1

MQ
type: SiteQuality
SIO_000300: 5.092e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
SIO_000300: 1.252e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.076e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e-1

DP
type: SiteQuality
SIO_000300: 1.790558e6

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43692
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1683
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7757
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3700
bin: 9.75e1
variant carriers: 22

European (Finnish)
type: Population
allele count: 16
allele frequency: 2.419110976716057e-3
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.045949214026602e-5
allele num: 66160
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.212389380530973e-3
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.092e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.13e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.076e0

MQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e-1

QD
type: SiteQuality
SIO_000300: 1.252e1

DP
type: SiteQuality
SIO_000300: 1.790558e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

GenotypeQuality
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43650
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
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GenotypeQuality
all individuals: 1683
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variant carriers: 0

GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 772
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.663703131039814e-5
allele num: 10348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.397e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 1.4493e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.387e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.392e0

DP
type: SiteQuality
SIO_000300: 1.789618e6

QD
type: SiteQuality
SIO_000300: 8.74e0

GenotypeQuality
all individuals: 32
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 50
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 32
bin: 4.75e1
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GenotypeQuality
all individuals: 767
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variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
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GenotypeQuality
all individuals: 43749
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.047228857376107e-5
allele num: 66146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 10
allele frequency: 1.515151515151515e-3
allele num: 6600
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.76e-1

MQ
type: SiteQuality
SIO_000300: 5.178e1

FS
type: SiteQuality
SIO_000300: 8.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.158e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.359e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.822e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e0

DP
type: SiteQuality
SIO_000300: 1.7901e6

QD
type: SiteQuality
SIO_000300: 8.9e-1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 31
bin: 4.75e1
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GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 50
bin: 5.25e1
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GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512035805007863e-5
allele num: 66136
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.624e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

DP
type: SiteQuality
SIO_000300: 1.788805e6

QD
type: SiteQuality
SIO_000300: 3.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-2

FS
type: SiteQuality
SIO_000300: 1.583e0

MQ
type: SiteQuality
SIO_000300: 5.519e1

MQRankSum
type: SiteQuality
SIO_000300: 9.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.273e0

GenotypeQuality
all individuals: 288
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43758
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variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 758
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variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

Latino
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allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
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allele count: 11
allele frequency: 1.0648596321394e-3
allele num: 10330
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.51372952680815e-5
allele num: 66062
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.271e0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.0e-3

MQRankSum
type: SiteQuality
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DP
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BaseQRankSum
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SIO_000300: -9.73e-1

InbreedingCoeff
type: SiteQuality
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66064
num of homozygotes: 0

South Asian
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allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-2

ReadPosRankSum
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DP
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MQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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MQ
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FS
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 1.54e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66066
num of homozygotes: 0

Latino
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allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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MQ
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SIO_000300: 5.682e1

InbreedingCoeff
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SIO_000300: 1.0e-4

BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: -9.8e-2

DP
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SIO_000300: 1.78611e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.320000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.19e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 9
allele frequency: 1.363305865244789e-4
allele num: 66016
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

MQ
type: SiteQuality
SIO_000300: 5.484e1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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SIO_000300: -8.031e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-2

QD
type: SiteQuality
SIO_000300: 1.109e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.078288353999514e-5
allele num: 16452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65870
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.218e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.294e0

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.777608e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.17e-1

MQ
type: SiteQuality
SIO_000300: 5.559e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.209e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.683570684265369e-5
allele num: 11516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.075e0

InbreedingCoeff
type: SiteQuality
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VQSLOD
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MQRankSum
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.92e-1

FS
type: SiteQuality
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MQ
type: SiteQuality
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QD
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518602885345482e-5
allele num: 65850
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8624
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.94e-1

QD
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DP
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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FS
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MQ
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SIO_000300: 5.467e1

BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele num: 8622
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Latino
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allele frequency: 8.691117677733357e-5
allele num: 11506
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South Asian
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allele num: 16444
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African
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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MQ
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QD
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DP
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MQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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Latino
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European (Non-Finnish)
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African
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European (Finnish)
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South Asian
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allele num: 16424
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MQRankSum
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DP
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7489
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.050268423621279e-5
allele num: 65568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: -3.28e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

DP
type: SiteQuality
SIO_000300: 1.761654e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

MQ
type: SiteQuality
SIO_000300: 5.452e1

FS
type: SiteQuality
SIO_000300: 2.509e0

QD
type: SiteQuality
SIO_000300: 1.43e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53275497378989e-5
allele num: 65242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10146
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e0

QD
type: SiteQuality
SIO_000300: 9.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.228e0

VQSLOD
type: SiteQuality
SIO_000300: -1.341e0

MQ
type: SiteQuality
SIO_000300: 5.557e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.45e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.74627e6

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 274
bin: 4.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11002
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9860
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.295643414756988e-5
allele num: 15884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.39e-1

FS
type: SiteQuality
SIO_000300: 4.708e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.39e-1

DP
type: SiteQuality
SIO_000300: 1.637933e6

MQRankSum
type: SiteQuality
SIO_000300: -1.513e0

MQ
type: SiteQuality
SIO_000300: 5.466e1

VQSLOD
type: SiteQuality
SIO_000300: -1.884e0

GenotypeQuality
all individuals: 853
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 425
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GenotypeQuality
all individuals: 463
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.801120448179272e-4
allele num: 10710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8156
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6030
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.239e0

MQRankSum
type: SiteQuality
SIO_000300: -4.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.79e-1

DP
type: SiteQuality
SIO_000300: 1.548081e6

MQ
type: SiteQuality
SIO_000300: 5.487e1

QD
type: SiteQuality
SIO_000300: 1.355e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

FS
type: SiteQuality
SIO_000300: 1.0215e1

VQSLOD
type: SiteQuality
SIO_000300: -1.558e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.79e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 848
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GenotypeQuality
all individuals: 534
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8044
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.619695497246518e-5
allele num: 61740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5932
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.444e-1

QD
type: SiteQuality
SIO_000300: 2.479e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 1.478926e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 5.348e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.767e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

FS
type: SiteQuality
SIO_000300: 1.195e0

GenotypeQuality
all individuals: 172
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4509
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GenotypeQuality
all individuals: 3210
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 54
allele frequency: 5.621486570893191e-3
allele num: 9606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.858142246404975e-5
allele num: 61752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5938
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.687203791469195e-4
allele num: 10550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8044
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

MQ
type: SiteQuality
SIO_000300: 5.298e1

VQSLOD
type: SiteQuality
SIO_000300: 5.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-2

DP
type: SiteQuality
SIO_000300: 1.478142e6

QD
type: SiteQuality
SIO_000300: 1.394e1

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2849
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15116
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.058649163667161e-4
allele num: 9446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

DP
type: SiteQuality
SIO_000300: 1.377363e6

MQRankSum
type: SiteQuality
SIO_000300: 1.74e0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.807e0

QD
type: SiteQuality
SIO_000300: 1.173e1

MQ
type: SiteQuality
SIO_000300: 4.39e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.838e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.656460094521733e-5
allele num: 60092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.016e0

VQSLOD
type: SiteQuality
SIO_000300: -1.448e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.288003e6

MQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.172e0

MQ
type: SiteQuality
SIO_000300: 5.236e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-2

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 427
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1237
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.287995878413189e-4
allele num: 7764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60030
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e0

MQ
type: SiteQuality
SIO_000300: 5.249e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 1.124e1

VQSLOD
type: SiteQuality
SIO_000300: -2.306e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.280396e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.184e0

GenotypeQuality
all individuals: 153
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variant carriers: 0

GenotypeQuality
all individuals: 1915
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.17769776910394e-4
allele num: 59438
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9954
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.05e1

FS
type: SiteQuality
SIO_000300: 3.706e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.08e-1

DP
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.368e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.715618995333516e-5
allele num: 58288
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 9658
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7488
num of homozygotes: 0

African
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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QD
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DP
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8950
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 802
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.725565985643291e-5
allele num: 57952
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9540
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South Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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DP
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MQ
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VQSLOD
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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SIO_000300: -2.5e-2

FS
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QD
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ReadPosRankSum
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SIO_000300: 2.12e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 57146
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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QD
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ReadPosRankSum
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SIO_000300: 1.02e0

ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.361e1

MQRankSum
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SIO_000300: -9.330000000000001e-1

FS
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SIO_000300: 0.0e0

DP
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SIO_000300: 1.182623e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9174
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.77355278093076e-5
allele num: 56384
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.648e1

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -4.874e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2544
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 452
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
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DP
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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MQ
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MQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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FS
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BaseQRankSum
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QD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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East Asian
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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InbreedingCoeff
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ReadPosRankSum
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FS
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DP
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BaseQRankSum
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MQRankSum
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MQ
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ClippingRankSum
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Other
type: Population
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Latino
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South Asian
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African
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European (Non-Finnish)
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FS
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ClippingRankSum
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MQ
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MQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 9090
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 7932
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 2.164502164502165e-3
allele num: 462
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

ReadPosRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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DP
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FS
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MQ
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ClippingRankSum
type: SiteQuality
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 9122
num of homozygotes: 0

South Asian
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allele frequency: 1.260716086737267e-4
allele num: 7932
num of homozygotes: 0

FS
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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DP
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MQRankSum
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QD
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MQ
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 9500
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 2882
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

QD
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InbreedingCoeff
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FS
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VQSLOD
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BaseQRankSum
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MQRankSum
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MQ
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DP
type: SiteQuality
SIO_000300: 6.62153e5

ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 9.765625e-4
allele num: 1024
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 3004
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 8026
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.438e0

MQ
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FS
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QD
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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MQRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.83e-1

BaseQRankSum
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3132
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 11018
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8132
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1254
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1300
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.7e-2

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 7.52963e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.179e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1666
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8294
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 4
allele frequency: 1.170275014628438e-3
allele num: 3418
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1028
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 12920
num of homozygotes: 0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
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FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -2.45e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 1042
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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allele count: 1
allele frequency: 7.653451706719731e-5
allele num: 13066
num of homozygotes: 0

African
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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MQ
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FS
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InbreedingCoeff
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ClippingRankSum
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DP
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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European (Finnish)
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East Asian
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South Asian
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allele num: 8290
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MQRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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FS
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MQ
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 1678
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Other
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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South Asian
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allele num: 8294
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VQSLOD
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DP
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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ReadPosRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1464
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 6.032818532818533e-4
allele num: 8288
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 5.924170616113745e-4
allele num: 1688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12922
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.862e0

QD
type: SiteQuality
SIO_000300: 1.266e1

MQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.54e-1

MQ
type: SiteQuality
SIO_000300: 4.444e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.70597e5

GenotypeQuality
all individuals: 110
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 532
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1076
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.617072582589824e-4
allele num: 8294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13018
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.67964e5

VQSLOD
type: SiteQuality
SIO_000300: -1.755e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.68e-1

MQ
type: SiteQuality
SIO_000300: 4.421e1

QD
type: SiteQuality
SIO_000300: 1.572e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.05e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.05e-1

FS
type: SiteQuality
SIO_000300: 2.888e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12768
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1358
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.495e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.63e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.921e0

MQ
type: SiteQuality
SIO_000300: 3.23e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 7.46728e5

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3368
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.344e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.27e0

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

MQ
type: SiteQuality
SIO_000300: 4.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.87e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.159e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.37373e5

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.121098626716604e-4
allele num: 3204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12010
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.86e-1

MQ
type: SiteQuality
SIO_000300: 4.06e1

DP
type: SiteQuality
SIO_000300: 6.97495e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.95e-2

FS
type: SiteQuality
SIO_000300: 1.006e0

QD
type: SiteQuality
SIO_000300: 6.27e0

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.084e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.23e-1

GenotypeQuality
all individuals: 428
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1185
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GenotypeQuality
all individuals: 1457
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11952
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 8.849557522123894e-4
allele num: 1130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1468
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.92268e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.251e1

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQ
type: SiteQuality
SIO_000300: 3.846e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.08e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.377e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8076
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3024
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1210
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.229e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

BaseQRankSum
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SIO_000300: -1.537e0

FS
type: SiteQuality
SIO_000300: 4.102e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQRankSum
type: SiteQuality
SIO_000300: 1.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.65e-2

MQ
type: SiteQuality
SIO_000300: 4.116e1

DP
type: SiteQuality
SIO_000300: 6.2931e5

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7918
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2672
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.269e1

VQSLOD
type: SiteQuality
SIO_000300: -2.444e0

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.767e1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.88e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.145737855178735e-4
allele num: 8728
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.26e-1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -4.14e-1

MQ
type: SiteQuality
SIO_000300: 3.121e1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.920000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.0e-2

BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 627
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.045307443365696e-4
allele num: 2472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7912
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.686e0

MQ
type: SiteQuality
SIO_000300: 3.212e1

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e-1

DP
type: SiteQuality
SIO_000300: 5.13528e5

QD
type: SiteQuality
SIO_000300: 8.789999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.23e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.892e0

GenotypeQuality
all individuals: 19628
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1221
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1447
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2851
bin: 9.75e1
variant carriers: 3

South Asian
type: Population
allele count: 2
allele frequency: 2.529084471421346e-4
allele num: 7908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.807692307692308e-3
allele num: 208
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.617e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.66e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.903e0

DP
type: SiteQuality
SIO_000300: 5.08681e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.749999999999999e-2

QD
type: SiteQuality
SIO_000300: 9.029999999999999e0

MQ
type: SiteQuality
SIO_000300: 3.069e1

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2074
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2981
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3082
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26437
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.777675063554426e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.998e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.814e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.11e-1

QD
type: SiteQuality
SIO_000300: 1.163e1

MQ
type: SiteQuality
SIO_000300: 5.863e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.034172e6

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3712
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4097
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2074
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3084
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.311e0

MQ
type: SiteQuality
SIO_000300: 5.868e1

DP
type: SiteQuality
SIO_000300: 3.034223e6

VQSLOD
type: SiteQuality
SIO_000300: -2.133e0

MQRankSum
type: SiteQuality
SIO_000300: 9.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.449e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e0

FS
type: SiteQuality
SIO_000300: 6.156e0

QD
type: SiteQuality
SIO_000300: 1.316e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5796
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2978
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4097
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12309
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.735e1

FS
type: SiteQuality
SIO_000300: 1.962e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

DP
type: SiteQuality
SIO_000300: 3.034328e6

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.09e-1

MQ
type: SiteQuality
SIO_000300: 5.711e1

MQRankSum
type: SiteQuality
SIO_000300: -1.862e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-1