16-15790799-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15790799
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15790799
    reference: chr 16
allele count: 4
allele frequency: 1.084128360797918e-4
allele num: 36896
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+82C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.253+2686C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.368+82C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+82C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.947+82C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+82C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.509+82C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.326+82C>G
  variant of: http://identifiers.org/hgnc/17619
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10746
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21796
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18065
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23032
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1002
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3413
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-15790800-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15790800
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15790800
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 35688
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.326+83C>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+83C>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.253+2687C>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.509+83C>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.368+83C>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.947+83C>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+83C>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+83C>A
  variant of: http://identifiers.org/hgnc/17619
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 22700
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17677
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21596
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP

16-15790800-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15790800
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15790800
    reference: chr 16
allele count: 11
allele frequency: 3.082268549652544e-4
allele num: 35688
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.947+83C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.326+83C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.253+2687C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+83C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+83C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.368+83C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.509+83C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+83C>T
  variant of: http://identifiers.org/hgnc/17619
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17677
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22700
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10203
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21596
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

16-15790801-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15790801
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15790801
    reference: chr 16
allele count: 2
allele frequency: 5.824111822947e-5
allele num: 34340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.947+84A>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+84A>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.368+84A>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.326+84A>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+84A>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.509+84A>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+84A>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.253+2688A>G
  variant of: http://identifiers.org/hgnc/17619
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23583
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17324
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9619
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20467
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ

16-15793407-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793407
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793407
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 714
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.510-47T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.254-179T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2690T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.369-179T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2690T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.948-179T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.327-179T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2690T>C
  variant of: http://identifiers.org/hgnc/17619
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21106
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11402
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP

16-15793419-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793419
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793419
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 714
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2702G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.948-167G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.369-167G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2702G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.254-167G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2702G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.327-167G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.510-35G>A
  variant of: http://identifiers.org/hgnc/17619
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21280
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7095
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13733
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: QD

16-15793427-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793427
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793427
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 752
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2710G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2710G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.948-159G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.254-159G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.327-159G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2710G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.369-159G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.510-27G>T
  variant of: http://identifiers.org/hgnc/17619
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22200
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16851
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

16-15793439-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793439
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793439
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 872
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.369-147T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.327-147T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.510-15T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2722T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.254-147T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.948-147T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2722T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2722T>C
  variant of: http://identifiers.org/hgnc/17619
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 24470
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3554
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20758
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

16-15793473-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793473
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793473
    reference: chr 16
allele count: 1
allele frequency: 3.591954022988506e-4
allele num: 2784
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2756G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.948-113G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.327-113G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2756G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.254-113G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*7G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.369-113G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2756G>T
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34901
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32802
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

16-15793485-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793485
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793485
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 5096
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*19T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.327-101T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.948-101T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2768T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.254-101T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2768T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.369-101T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2768T>C
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10506
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34349
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

16-15793494-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793494
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793494
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 7362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.948-92T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.254-92T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2777T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2777T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.369-92T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*28T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.327-92T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2777T>C
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 13982
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34619
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

16-15793496-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793496
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793496
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 7816
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.369-90G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.254-90G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2779G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.948-90G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2779G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.327-90G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*30G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2779G>A
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14930
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33948
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32440
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12950
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-15793499-G-GTTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793499
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793502
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 8534
alternate allele: GTTC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2783_947+2785dupTTC
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.369-86_369-84dupTTC
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.948-86_948-84dupTTC
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2783_947+2785dupTTC
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*34_*36dupTTC
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.254-86_254-84dupTTC
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.327-86_327-84dupTTC
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2783_947+2785dupTTC
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16438
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32789
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2494
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31355
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

16-15793504-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793504
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793504
    reference: chr 16
allele count: 1
allele frequency: 1.013993104846887e-4
allele num: 9862
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.948-82C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.327-82C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2787C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*38C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.369-82C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2787C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.254-82C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2787C>T
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18840
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30627
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2862
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29284
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

16-15793507-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793507
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793507
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 10824
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2790T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*41T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.254-79T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2790T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.369-79T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2790T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.948-79T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.327-79T>C
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20320
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27810
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

16-15793511-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793511
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793511
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 12072
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.369-75A>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2794A>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2794A>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.327-75A>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*45A>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.254-75A>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2794A>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.948-75A>G
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26878
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22616
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19624
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25670
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-15793512-ACT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793512
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793510
    reference: chr 16
allele count: 1
allele frequency: 8.058017727639001e-5
allele num: 12410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.948-69_948-68delCT
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2800_947+2801delCT
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2800_947+2801delCT
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.327-69_327-68delCT
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.254-69_254-68delCT
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*51_*52delCT
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2800_947+2801delCT
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.369-69_369-68delCT
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25044
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20255
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: ACT
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD

16-15793552-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793552
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793552
    reference: chr 16
allele count: 29
allele frequency: 4.017733444167359e-4
allele num: 72180
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2835T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.327-34T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*86T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2835T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.948-34T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.369-34T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2835T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.254-34T>C
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17089
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4451
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8305
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17969
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16812
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5102
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7423
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-15793554-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793554
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793554
    reference: chr 16
allele count: 147
allele frequency: 2.026468155500414e-3
allele num: 72540
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.254-32T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.327-32T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2837T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*88T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2837T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.948-32T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.369-32T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2837T>C
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9289
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16657
  bin: 1.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 17983
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3854
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 1.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2975
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 7249
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12046
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2499
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4545
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 1.25e1
  variant carriers: 1
num of homozygotes: 3
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP

16-15793560-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793560
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793560
    reference: chr 16
allele count: 3
allele frequency: 4.050769646232784e-5
allele num: 74060
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.948-26C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2843C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2843C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2843C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.327-26C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.254-26C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*94C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.369-26C>T
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4276
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12786
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14616
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4634
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3566
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15533
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

16-15793568-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793568
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793568
    reference: chr 16
allele count: 1
allele frequency: 1.2950348364371e-5
allele num: 77218
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*102G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.327-18G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.948-18G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.254-18G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.369-18G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2851G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2851G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2851G>T
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16702
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10952
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4660
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17117
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

16-15793578-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793578
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793578
    reference: chr 16
allele count: 1
allele frequency: 1.191014982968486e-5
allele num: 83962
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2861G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.948-8G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2861G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2861G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*112G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.369-8G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.327-8G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.254-8G>C
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6970
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2629
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 5.75e1
  variant carriers: 0
hgvs: c.369-8G>C
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

16-15793579-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793579
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793579
    reference: chr 16
allele count: 1
allele frequency: 1.18058179070646e-5
allele num: 84704
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2862T>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.254-7T>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.948-7T>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.369-7T>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2862T>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*113T>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.327-7T>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2862T>A
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6663
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13601
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2537
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29088
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
hgvs: c.369-7T>A
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

16-15793580-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793580
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793580
    reference: chr 16
allele count: 1
allele frequency: 1.171810916590499e-5
allele num: 85338
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2863C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2863C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.369-6C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.948-6C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*114C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.254-6C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.327-6C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2863C>G
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5773
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 3.75e1
  variant carriers: 0
hgvs: c.369-6C>G
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

16-15793591-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793591
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793591
    reference: chr 16
allele count: 2
allele frequency: 2.17556836723594e-5
allele num: 91930
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.332G>A
  hgvsp: ENSP00000459918.1:p.Gly111Glu
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.374G>A
  hgvsp: ENSP00000461748.1:p.Gly125Glu
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2874G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.953G>A
  hgvsp: ENSP00000379641.2:p.Gly318Glu
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.259G>A
  hgvsp: ENST00000573694.1:c.259G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2874G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*125G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2874G>A
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10910
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly125Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

16-15793592-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793592
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793593
    reference: chr 16
allele count: 1
allele frequency: 1.084669284335206e-5
allele num: 92194
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2877dupA
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*128dupA
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.335dupA
  hgvsp: ENSP00000459918.1:p.Arg113AlafsTer?
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.262dupA
  hgvsp: ENSP00000459863.1:p.Ala89SerfsTer23
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.377dupA
  hgvsp: ENSP00000461748.1:p.Arg127AlafsTer52
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.956dupA
  hgvsp: ENSP00000379641.2:p.Arg320AlafsTer?
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2877dupA
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2877dupA
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10021
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32658
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg127AlafsTer52
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

16-15793596-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793596
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793596
    reference: chr 16
allele count: 7
allele frequency: 7.480390690119472e-5
allele num: 93578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.264C>T
  hgvsp: ENSP00000459863.1:p.Ala89Val
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2879C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.337C>T
  hgvsp: ENSP00000459918.1:p.Arg113Cys
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.379C>T
  hgvsp: ENSP00000461748.1:p.Arg127Cys
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2879C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.958C>T
  hgvsp: ENSP00000379641.2:p.Arg320Cys
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*130C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2879C>T
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31004
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7403
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34616
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10213
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg127Cys
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ

16-15793597-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793597
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793597
    reference: chr 16
allele count: 8
allele frequency: 8.478528127517063e-5
allele num: 94356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.265G>A
  hgvsp: ENST00000573694.1:c.265G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.338G>A
  hgvsp: ENSP00000459918.1:p.Arg113His
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2880G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2880G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*131G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2880G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.380G>A
  hgvsp: ENSP00000461748.1:p.Arg127His
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.959G>A
  hgvsp: ENSP00000379641.2:p.Arg320His
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7566
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8968
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35337
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg127His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-15793597-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793597
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793597
    reference: chr 16
allele count: 4
allele frequency: 4.239264063758532e-5
allele num: 94356
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2880G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.380G>C
  hgvsp: ENSP00000461748.1:p.Arg127Pro
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*131G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.959G>C
  hgvsp: ENSP00000379641.2:p.Arg320Pro
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.338G>C
  hgvsp: ENSP00000459918.1:p.Arg113Pro
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.265G>C
  hgvsp: ENST00000573694.1:c.265G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2880G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2880G>C
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8968
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg127Pro
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-15793598-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793598
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793598
    reference: chr 16
allele count: 1
allele frequency: 1.051989311788592e-5
allele num: 95058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.266C>T
  hgvsp: ENSP00000459863.1:p.Pro90Ser
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2881C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*132C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.381C>T
  hgvsp: ENST00000576502.1:c.381C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.960C>T
  hgvsp: ENST00000396353.2:c.960C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.339C>T
  hgvsp: ENST00000572967.1:c.339C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2881C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2881C>T
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31750
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2781
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro90Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

16-15793615-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793615
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793615
    reference: chr 16
allele count: 2741
allele frequency: 2.734437350359138e-2
allele num: 100240
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2898C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2898C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2898C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.283C>T
  hgvsp: ENST00000573694.1:c.283C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.398C>T
  hgvsp: ENSP00000461748.1:p.Pro133Leu
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*149C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.977C>T
  hgvsp: ENSP00000379641.2:p.Pro326Leu
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.356C>T
  hgvsp: ENSP00000459918.1:p.Pro119Leu
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6139
  bin: 7.5e0
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 1.25e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 8966
  bin: 2.75e1
  variant carriers: 366
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 3.25e1
  variant carriers: 289
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 1.75e1
  variant carriers: 351
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 2.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 3.75e1
  variant carriers: 186
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.25e1
  variant carriers: 139
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 32533
  bin: 2.25e1
  variant carriers: 432
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 5.25e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 3.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 9.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 4.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 7.5e0
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 3.25e1
  variant carriers: 20
hgvs: p.Pro133Leu
num of homozygotes: 395
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

16-15793616-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793616
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793616
    reference: chr 16
allele count: 19
allele frequency: 1.898253606681853e-4
allele num: 100092
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*150G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.978G>A
  hgvsp: ENST00000396353.2:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2899G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.357G>A
  hgvsp: ENST00000572967.1:c.357G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2899G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.399G>A
  hgvsp: ENST00000576502.1:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.284G>A
  hgvsp: ENSP00000459863.1:p.Ala96Thr
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2899G>A
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32876
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9472
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38480
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala96Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

16-15793625-CAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793625
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793623
    reference: chr 16
allele count: 7
allele frequency: 6.931379344489554e-5
allele num: 100990
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2909_947+2910delAT
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.294_295delAT
  hgvsp: ENSP00000459863.1:p.His99ArgfsTer12
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.367_368delAT
  hgvsp: ENSP00000459918.1:p.Met123ValfsTer?
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*160_*161delAT
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.409_410delAT
  hgvsp: ENSP00000461748.1:p.Met137ValfsTer41
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.988_989delAT
  hgvsp: ENSP00000379641.2:p.Met330ValfsTer?
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2909_947+2910delAT
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2909_947+2910delAT
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32922
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9887
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5810
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7016
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met137ValfsTer41
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: CAT
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

16-15793626-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793626
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793626
    reference: chr 16
allele count: 4
allele frequency: 3.956635277360133e-5
allele num: 101096
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2909A>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.409A>G
  hgvsp: ENSP00000461748.1:p.Met137Val
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*160A>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.294A>G
  hgvsp: ENSP00000459863.1:p.His99Arg
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2909A>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2909A>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.988A>G
  hgvsp: ENSP00000379641.2:p.Met330Val
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.367A>G
  hgvsp: ENSP00000459918.1:p.Met123Val
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5776
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9911
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3175
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6998
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39244
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met137Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

16-15793627-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793627
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793627
    reference: chr 16
allele count: 1
allele frequency: 9.890414210547138e-6
allele num: 101108
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.410T>C
  hgvsp: ENSP00000461748.1:p.Met137Thr
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.368T>C
  hgvsp: ENSP00000459918.1:p.Met123Thr
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2910T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2910T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*161T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.295T>C
  hgvsp: ENST00000573694.1:c.295T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.989T>C
  hgvsp: ENSP00000379641.2:p.Met330Thr
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2910T>C
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5773
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Met137Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/16-15793633-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793633
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793633
    reference: chr 16
allele count: 2
allele frequency: 1.979022362952701e-5
allele num: 101060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*167C>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.301C>A
  hgvsp: ENSP00000459863.1:p.Phe101Leu
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.995C>A
  hgvsp: ENSP00000379641.2:p.Ser332Ter
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2916C>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2916C>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.374C>A
  hgvsp: ENSP00000459918.1:p.Ser125Ter
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.416C>A
  hgvsp: ENSP00000461748.1:p.Ser139Ter
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2916C>A
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5749
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser139Ter
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

16-15793634-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793634
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793634
    reference: chr 16
allele count: 3
allele frequency: 2.966596127603188e-5
allele num: 101126
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2917A>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.417A>G
  hgvsp: ENST00000576502.1:c.417A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2917A>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.996A>G
  hgvsp: ENST00000396353.2:c.996A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*168A>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.375A>G
  hgvsp: ENST00000572967.1:c.375A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.302A>G
  hgvsp: ENSP00000459863.1:p.Ile102Val
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2917A>G
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32487
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10205
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38415
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile102Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/16-15793636-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793636
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793636
    reference: chr 16
allele count: 1
allele frequency: 9.905501515541733e-6
allele num: 100954
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2919C>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.998C>A
  hgvsp: ENSP00000379641.2:p.Ser333Ter
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.304C>A
  hgvsp: ENST00000573694.1:c.304C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.377C>A
  hgvsp: ENSP00000459918.1:p.Ser126Ter
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.419C>A
  hgvsp: ENSP00000461748.1:p.Ser140Ter
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2919C>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2919C>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*170C>A
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32157
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7288
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3116
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser140Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

16-15793636-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793636
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793636
    reference: chr 16
allele count: 3
allele frequency: 2.971650454662519e-5
allele num: 100954
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.377C>T
  hgvsp: ENSP00000459918.1:p.Ser126Leu
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.419C>T
  hgvsp: ENSP00000461748.1:p.Ser140Leu
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*170C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2919C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.998C>T
  hgvsp: ENSP00000379641.2:p.Ser333Leu
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2919C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.304C>T
  hgvsp: ENST00000573694.1:c.304C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2919C>T
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10362
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser140Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

16-15793637-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793637
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793637
    reference: chr 16
allele count: 157
allele frequency: 1.553286635798805e-3
allele num: 101076
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.305G>A
  hgvsp: ENSP00000459863.1:p.Ala103Thr
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2920G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.420G>A
  hgvsp: ENST00000576502.1:c.420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2920G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2920G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.999G>A
  hgvsp: ENST00000396353.2:c.999G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.378G>A
  hgvsp: ENST00000572967.1:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*171G>A
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10405
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 32237
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7244
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala103Thr
num of homozygotes: 2
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum

16-15793639-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793639
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793639
    reference: chr 16
allele count: 1803
allele frequency: 1.779194379206221e-2
allele num: 101338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2922C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.1001C>T
  hgvsp: ENSP00000379641.2:p.Pro334Leu
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2922C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.307C>T
  hgvsp: ENST00000573694.1:c.307C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*173C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.422C>T
  hgvsp: ENSP00000461748.1:p.Pro141Leu
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2922C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.380C>T
  hgvsp: ENSP00000459918.1:p.Pro127Leu
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10533
  bin: 2.75e1
  variant carriers: 267
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 3.75e1
  variant carriers: 169
genotype depth: GenotypeDepth
  all individuals: 31597
  bin: 2.25e1
  variant carriers: 277
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.75e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 1.75e1
  variant carriers: 197
genotype depth: GenotypeDepth
  all individuals: 5597
  bin: 7.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 3.25e1
  variant carriers: 229
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 1.25e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 136
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 8.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 7.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.25e1
  variant carriers: 7
hgvs: p.Pro141Leu
num of homozygotes: 21
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

16-15793640-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793640
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793640
    reference: chr 16
allele count: 1
allele frequency: 9.919650828290845e-6
allele num: 100810
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.423G>A
  hgvsp: ENST00000576502.1:c.423G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2923G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.1002G>A
  hgvsp: ENST00000396353.2:c.1002G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.308G>A
  hgvsp: ENSP00000459863.1:p.Ala104Thr
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.381G>A
  hgvsp: ENST00000572967.1:c.381G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*174G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2923G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2923G>A
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5819
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11039
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31417
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38050
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala104Thr
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/16-15793645-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793645
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793645
    reference: chr 16
allele count: 2
allele frequency: 1.987399884730807e-5
allele num: 100634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*179C>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2928C>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2928C>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.428C>A
  hgvsp: ENSP00000461748.1:p.Pro143Gln
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.1007C>A
  hgvsp: ENSP00000379641.2:p.Pro336Gln
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.313C>A
  hgvsp: ENST00000573694.1:c.313C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2928C>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.386C>A
  hgvsp: ENSP00000459918.1:p.Pro129Gln
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5958
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro143Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

16-15793645-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793645
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793645
    reference: chr 16
allele count: 6
allele frequency: 5.96219965419242e-5
allele num: 100634
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2928C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.1007C>T
  hgvsp: ENSP00000379641.2:p.Pro336Leu
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2928C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.428C>T
  hgvsp: ENSP00000461748.1:p.Pro143Leu
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.386C>T
  hgvsp: ENSP00000459918.1:p.Pro129Leu
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2928C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.313C>T
  hgvsp: ENST00000573694.1:c.313C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*179C>T
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11217
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5958
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro143Leu
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

16-15793646-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793646
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793646
    reference: chr 16
allele count: 5
allele frequency: 4.983653616139064e-5
allele num: 100328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*180G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2929G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2929G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.314G>A
  hgvsp: ENSP00000459863.1:p.Val106Ile
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.1008G>A
  hgvsp: ENST00000396353.2:c.1008G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.429G>A
  hgvsp: ENST00000576502.1:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.387G>A
  hgvsp: ENST00000572967.1:c.387G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2929G>A
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3136
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val106Ile
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum

16-15793648-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793648
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793648
    reference: chr 16
allele count: 1
allele frequency: 9.979442348761552e-6
allele num: 100206
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.389C>G
  hgvsp: ENSP00000459918.1:p.Ser130Ter
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*182C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2931C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.316C>G
  hgvsp: ENST00000573694.1:c.316C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2931C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.1010C>G
  hgvsp: ENSP00000379641.2:p.Ser337Ter
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2931C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.431C>G
  hgvsp: ENSP00000461748.1:p.Ser144Ter
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11241
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8366
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser144Ter
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

16-15793650-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793650
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793650
    reference: chr 16
allele count: 2
allele frequency: 2.005012531328321e-5
allele num: 99750
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2933G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2933G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*184G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.391G>C
  hgvsp: ENSP00000459918.1:p.Ala131Pro
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2933G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.433G>C
  hgvsp: ENSP00000461748.1:p.Ala145Pro
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.1012G>C
  hgvsp: ENSP00000379641.2:p.Ala338Pro
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.318G>C
  hgvsp: ENSP00000459863.1:p.Ser107Thr
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11162
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala145Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/16-15793653-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793653
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793652
    reference: chr 16
allele count: 1
allele frequency: 1.006887107817472e-5
allele num: 99316
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2937delA
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.1016delA
  hgvsp: ENSP00000379641.2:p.Gln339ArgfsTer3
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2937delA
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.395delA
  hgvsp: ENSP00000459918.1:p.Gln132ArgfsTer3
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.437delA
  hgvsp: ENSP00000461748.1:p.Gln146ArgfsTer3
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*188delA
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2937delA
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.322delA
  hgvsp: ENSP00000459863.1:p.Gly110ValfsTer7
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6606
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30005
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3090
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37378
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gln146ArgfsTer3
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: CA
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

16-15793654-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793654
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793655
    reference: chr 16
allele count: 3
allele frequency: 3.026573313694236e-5
allele num: 99122
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.442dupG
  hgvsp: ENSP00000461748.1:p.Val148GlyfsTer31
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2942dupG
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*193dupG
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.327dupG
  hgvsp: ENSP00000459863.1:p.Ser111Ter
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.400dupG
  hgvsp: ENSP00000459918.1:p.Val134GlyfsTer?
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2942dupG
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2942dupG
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.1021dupG
  hgvsp: ENSP00000379641.2:p.Val341GlyfsTer?
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37167
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val148GlyfsTer31
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

16-15793654-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793654
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793654
    reference: chr 16
allele count: 1
allele frequency: 1.008857771231412e-5
allele num: 99122
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.437A>G
  hgvsp: ENSP00000461748.1:p.Gln146Arg
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.395A>G
  hgvsp: ENSP00000459918.1:p.Gln132Arg
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.1016A>G
  hgvsp: ENSP00000379641.2:p.Gln339Arg
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.322A>G
  hgvsp: ENST00000573694.1:c.322A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2937A>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2937A>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2937A>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*188A>G
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11053
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln132Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

16-15793654-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793654
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793653
    reference: chr 16
allele count: 1
allele frequency: 1.008857771231412e-5
allele num: 99122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2942delG
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.1021delG
  hgvsp: ENSP00000379641.2:p.Val341Ter
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.442delG
  hgvsp: ENSP00000461748.1:p.Val148Ter
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.400delG
  hgvsp: ENSP00000459918.1:p.Val134Ter
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.327delG
  hgvsp: ENSP00000459863.1:p.Gly110ValfsTer7
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2942delG
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2942delG
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*193delG
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37167
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9292
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly110ValfsTer7
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: AG
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

16-15793656-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793656
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793656
    reference: chr 16
allele count: 1
allele frequency: 1.011081452721831e-5
allele num: 98904
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*190G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.324G>A
  hgvsp: ENSP00000459863.1:p.Gly109Glu
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2939G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.397G>A
  hgvsp: ENSP00000459918.1:p.Gly133Arg
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2939G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.439G>A
  hgvsp: ENSP00000461748.1:p.Gly147Arg
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.1018G>A
  hgvsp: ENSP00000379641.2:p.Gly340Arg
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2939G>A
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29621
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9539
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36993
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly147Arg
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

16-15793656-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793656
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793656
    reference: chr 16
allele count: 217
allele frequency: 2.194046752406374e-3
allele num: 98904
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.1018G>C
  hgvsp: ENSP00000379641.2:p.Gly340Arg
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*190G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2939G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2939G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.397G>C
  hgvsp: ENSP00000459918.1:p.Gly133Arg
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.439G>C
  hgvsp: ENSP00000461748.1:p.Gly147Arg
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.324G>C
  hgvsp: ENSP00000459863.1:p.Gly109Ala
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2939G>C
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29621
  bin: 2.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 6795
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 1.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10947
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 9539
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly147Arg
num of homozygotes: 4
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-15793658-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793658
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793658
    reference: chr 16
allele count: 2
allele frequency: 2.028891413731537e-5
allele num: 98576
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.441G>A
  hgvsp: ENST00000576502.1:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2941G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.399G>A
  hgvsp: ENST00000572967.1:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*192G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2941G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.326G>A
  hgvsp: ENSP00000459863.1:p.Gly110Ser
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.1020G>A
  hgvsp: ENST00000396353.2:c.1020G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2941G>A
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6963
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3009
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly110Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

16-15793659-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793659
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793659
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 98378
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2942G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.400G>C
  hgvsp: ENSP00000459918.1:p.Val134Leu
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2942G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.1021G>C
  hgvsp: ENSP00000379641.2:p.Val341Leu
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2942G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*193G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.442G>C
  hgvsp: ENSP00000461748.1:p.Val148Leu
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.327G>C
  hgvsp: ENSP00000459863.1:p.Gly110Ala
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7038
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val148Leu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/16-15793661-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793661
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793661
    reference: chr 16
allele count: 1
allele frequency: 1.019659026021698e-5
allele num: 98072
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2944A>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.1023A>C
  hgvsp: ENST00000396353.2:c.1023A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.444A>C
  hgvsp: ENST00000576502.1:c.444A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*195A>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.329A>C
  hgvsp: ENSP00000459863.1:p.Ser111Arg
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.402A>C
  hgvsp: ENST00000572967.1:c.402A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2944A>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2944A>C
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29072
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10438
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3010
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser111Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS

16-15793664-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793664
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793664
    reference: chr 16
allele count: 2
allele frequency: 2.074215428014354e-5
allele num: 96422
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379641
  ensembl transcript: ENST00000396353
  gene symbol: NDE1
  hgvsc: ENST00000396353.2:c.1026C>G
  hgvsp: ENST00000396353.2:c.1026C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2947C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2947C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2947C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.447C>G
  hgvsp: ENST00000576502.1:c.447C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*198C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.332C>G
  hgvsp: ENSP00000459863.1:p.Gln112Glu
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.405C>G
  hgvsp: ENST00000572967.1:c.405C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7964
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5536
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2885
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11858
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln112Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

16-15793688-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793688
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793688
    reference: chr 16
allele count: 3
allele frequency: 3.510989396812022e-5
allele num: 85446
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.356C>T
  hgvsp: ENSP00000459863.1:p.Arg120Trp
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.*9C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2971C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.*9C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2971C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*222C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2971C>T
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12879
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17199
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22252
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg120Trp
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

16-15793689-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793689
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793689
    reference: chr 16
allele count: 1
allele frequency: 1.193345903243514e-5
allele num: 83798
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.357G>A
  hgvsp: ENSP00000459863.1:p.Arg120Gln
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2972G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2972G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.*10G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.*10G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2972G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*223G>A
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13008
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23339
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1885
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg120Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

16-15793690-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793690
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793690
    reference: chr 16
allele count: 1
allele frequency: 1.191951940497759e-5
allele num: 83896
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2973G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*224G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2973G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.358G>A
  hgvsp: ENST00000573694.1:c.358G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2973G>A
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13032
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16091
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13545
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7993
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1882
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23566
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg120Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

16-15793694-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793694
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793694
    reference: chr 16
allele count: 1
allele frequency: 1.213356629780625e-5
allele num: 82416
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.*15C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*228C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.*15C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2977C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.362C>G
  hgvsp: ENSP00000459863.1:p.Leu122Val
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2977C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2977C>G
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7561
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21126
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1932
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1500
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24840
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu122Val
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

16-15793706-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793706
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793706
    reference: chr 16
allele count: 1
allele frequency: 1.395634455423435e-5
allele num: 71652
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2989G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*240G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.374G>C
  hgvsp: ENSP00000459863.1:p.Val126Leu
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2989G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.*27G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2989G>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.*27G>C
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17445
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18421
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11660
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val126Leu
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

16-15793715-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793715
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793715
    reference: chr 16
allele count: 12
allele frequency: 1.924866061403227e-4
allele num: 62342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.*32+4C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2998C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*249C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2998C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.379+4C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2998C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.*36C>T
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19125
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4060
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6339
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18969
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32386
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2517
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7684
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 2.5e0
  variant carriers: 0
hgvs: c.*32+4C>T
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-15793716-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793716
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793716
    reference: chr 16
allele count: 3
allele frequency: 4.956056300799577e-5
allele num: 60532
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+2999G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.*37G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.379+5G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.*32+5G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+2999G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*250G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+2999G>A
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6791
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18922
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7421
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2492
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
hgvs: c.*32+5G>A
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP

16-15793722-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793722
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793722
    reference: chr 16
allele count: 1
allele frequency: 1.790382067533212e-5
allele num: 55854
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+3005C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*256C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+3005C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.379+11C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.*43C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+3005C>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.*32+11C>T
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8897
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19890
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5839
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9664
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

16-15793723-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793723
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793723
    reference: chr 16
allele count: 2
allele frequency: 3.845858010922237e-5
allele num: 52004
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+3006G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*257G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+3006G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.379+12G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.*44G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.*32+12G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+3006G>A
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10436
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17693
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2460
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29906
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

16-15793727-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793727
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793727
    reference: chr 16
allele count: 1
allele frequency: 2.018815359147252e-5
allele num: 49534
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*261C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+3010C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.*32+16C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+3010C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.*48C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.379+16C>G
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+3010C>G
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17122
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11912
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19836
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1500
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12856
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

16-15793734-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793734
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793734
    reference: chr 16
allele count: 1
allele frequency: 2.449179524859172e-5
allele num: 40830
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+3017T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+3017T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*268T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.*32+23T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.*55T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.379+23T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+3017T>C
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15558
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1902
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD

16-15793736-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793736
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793736
    reference: chr 16
allele count: 2
allele frequency: 5.248792777661138e-5
allele num: 38104
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.*32+25G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+3019G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+3019G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+3019G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*270G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.*57G>A
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.379+25G>A
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16521
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13553
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17791
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24931
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

16-15793736-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793736
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793736
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 38104
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*270G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+3019G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.*57G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.379+25G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+3019G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+3019G>T
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.*32+25G>T
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: 3' UTR
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16521
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13553
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20351
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17791
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24931
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3225
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2440
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

16-15793742-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15793742
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 15793742
    reference: chr 16
allele count: 1
allele frequency: 3.21254176304292e-5
allele num: 31128
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379643
  ensembl transcript: ENST00000396355
  gene symbol: NDE1
  hgvsc: ENST00000396355.1:c.947+3025T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000379642
  ensembl transcript: ENST00000396354
  gene symbol: NDE1
  hgvsc: ENST00000396354.1:c.947+3025T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459875
  ensembl transcript: ENST00000574109
  gene symbol: NDE1
  hgvsc: ENST00000574109.1:c.*276T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459863
  ensembl transcript: ENST00000573694
  gene symbol: NDE1
  hgvsc: ENST00000573694.1:c.379+31T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000459918
  ensembl transcript: ENST00000572967
  gene symbol: NDE1
  hgvsc: ENST00000572967.1:c.*32+31T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000461748
  ensembl transcript: ENST00000576502
  gene symbol: NDE1
  hgvsc: ENST00000576502.1:c.*63T>C
  variant of: http://identifiers.org/hgnc/17619
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072864
  ensembl protein: ENSP00000345892
  ensembl transcript: ENST00000342673
  gene symbol: NDE1
  hgvsc: ENST00000342673.5:c.947+3025T>C
  variant of: http://identifiers.org/hgnc/17619
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19340
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10633
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20705
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4039
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18768
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T

GenotypeQuality
all individuals: 193
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22634
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1759
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 6.57030223390276e-4
allele num: 1522
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 9.529860228716646e-4
allele num: 3148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1682
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1584
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.720000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.37e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.98e-1

DP
type: SiteQuality
SIO_000300: 6.40665e5

MQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

GenotypeQuality
all individuals: 969
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1685
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3422
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23878
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3032
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17954
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1410
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9866
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1522
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: -1.813e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

VQSLOD
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SIO_000300: 1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.57e-2

FS
type: SiteQuality
SIO_000300: 1.757e0

QD
type: SiteQuality
SIO_000300: 1.005e1

DP
type: SiteQuality
SIO_000300: 6.30864e5

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1410
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1588
num of homozygotes: 0

European (Non-Finnish)
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allele count: 11
allele frequency: 6.126768408154172e-4
allele num: 17954
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1522
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9866
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

MQ
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SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.757e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.813e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.57e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
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SIO_000300: 6.30864e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
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SIO_000300: 1.005e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1488
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1302
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1446
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 2.052966536645453e-4
allele num: 9742
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 17160
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.774e-1

DP
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SIO_000300: 6.20827e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.68e-2

FS
type: SiteQuality
SIO_000300: 1.719e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.93e-1

QD
type: SiteQuality
SIO_000300: 1.128e1

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.3e-1

QD
type: SiteQuality
SIO_000300: 2.157e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -1.223e-1

FS
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SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.5637e4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.146e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.3e-1

DP
type: SiteQuality
SIO_000300: 5.9467e4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.45e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.606e4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -1.072e-1

VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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DP
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QD
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MQRankSum
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MQ
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ReadPosRankSum
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BaseQRankSum
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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Other
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 1120
num of homozygotes: 0

InbreedingCoeff
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FS
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DP
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BaseQRankSum
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MQ
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QD
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ReadPosRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

European (Finnish)
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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East Asian
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FS
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QD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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MQ
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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African
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East Asian
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South Asian
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MQ
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QD
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VQSLOD
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FS
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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BaseQRankSum
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DP
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MQ
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VQSLOD
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FS
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QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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ReadPosRankSum
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FS
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InbreedingCoeff
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QD
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ClippingRankSum
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MQ
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MQRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

South Asian
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allele frequency: 1.998401278976818e-4
allele num: 5004
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.86e-1

DP
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InbreedingCoeff
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BaseQRankSum
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MQ
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FS
type: SiteQuality
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ClippingRankSum
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QD
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.321e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3656
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -6.11e-2

DP
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SIO_000300: 3.19224e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

QD
type: SiteQuality
SIO_000300: 1.019e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.274999999999999e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 402
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5946
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4180
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

DP
type: SiteQuality
SIO_000300: 3.45239e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.380000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 9.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.59e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4314
num of homozygotes: 0

South Asian
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allele frequency: 1.646361540994402e-4
allele num: 6074
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Other
type: Population
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allele frequency: 0.0e0
allele num: 134
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BaseQRankSum
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SIO_000300: -6.34e-1

InbreedingCoeff
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SIO_000300: -5.45e-2

ReadPosRankSum
type: SiteQuality
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FS
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DP
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ClippingRankSum
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SIO_000300: -1.46e-1

VQSLOD
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MQRankSum
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MQ
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 29

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4596
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 2.528775723753052e-3
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Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
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ClippingRankSum
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MQ
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DP
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QD
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FS
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 138

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 564
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African
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East Asian
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Latino
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allele count: 3
allele frequency: 5.432814197754436e-4
allele num: 5522
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European (Finnish)
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allele frequency: 4.416961130742049e-4
allele num: 4528
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European (Non-Finnish)
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allele frequency: 9.800078400627205e-4
allele num: 40816
num of homozygotes: 0

South Asian
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allele frequency: 8.759757155247181e-3
allele num: 11530
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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MQ
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VQSLOD
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ReadPosRankSum
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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European (Finnish)
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South Asian
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African
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East Asian
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Other
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ClippingRankSum
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QD
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VQSLOD
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ReadPosRankSum
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MQ
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FS
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MQRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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allele frequency: 1.609787508048938e-4
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European (Finnish)
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11910
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4920
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.506e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 9.24209e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.251e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.214e0

QD
type: SiteQuality
SIO_000300: 1.99e0

GenotypeQuality
all individuals: 14561
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1255
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6022
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5044
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12460
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.874062968515742e-4
allele num: 5336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.626e0

DP
type: SiteQuality
SIO_000300: 1.017951e6

VQSLOD
type: SiteQuality
SIO_000300: 1.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.19e-1

QD
type: SiteQuality
SIO_000300: 1.485e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5084
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6100
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.09810750702866e-5
allele num: 47662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.91e-1

QD
type: SiteQuality
SIO_000300: 1.0e1

DP
type: SiteQuality
SIO_000300: 1.025382e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.16e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12552
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.622849724115547e-4
allele num: 6162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.15e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.27e-1

FS
type: SiteQuality
SIO_000300: 2.031e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

QD
type: SiteQuality
SIO_000300: 9.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.248e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

DP
type: SiteQuality
SIO_000300: 1.035015e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

GenotypeQuality
all individuals: 97
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 845
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1470
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5984
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.527183872938302e-4
allele num: 13096
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e0

DP
type: SiteQuality
SIO_000300: 1.110508e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

QD
type: SiteQuality
SIO_000300: 1.257e1

MQRankSum
type: SiteQuality
SIO_000300: 7.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.27e0

GenotypeQuality
all individuals: 844
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.935433924285825e-5
allele num: 51668
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13148
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.11401e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.72e-1

QD
type: SiteQuality
SIO_000300: 6.77e0

MQ
type: SiteQuality
SIO_000300: 6.107e1

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

FS
type: SiteQuality
SIO_000300: 8.218e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.25e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.908105632727828e-5
allele num: 52408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6876
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 6.909258406264394e-4
allele num: 8684
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.5949e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.1e-2

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.02e-1

QD
type: SiteQuality
SIO_000300: 8.220000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

DP
type: SiteQuality
SIO_000300: 1.130702e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.895950250265433e-5
allele num: 52744
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6958
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 5.237168936106539e-4
allele num: 13366
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 1.140249e6

FS
type: SiteQuality
SIO_000300: 1.207e0

QD
type: SiteQuality
SIO_000300: 1.177e1

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.18e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.244500972617088e-4
allele num: 13366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6958
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.895950250265433e-5
allele num: 52744
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.177e1

FS
type: SiteQuality
SIO_000300: 1.207e0

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.18e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 78
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GenotypeQuality
all individuals: 75
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7030
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.605651894669236e-4
allele num: 6228
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 6.069e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

DP
type: SiteQuality
SIO_000300: 1.145858e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.362e0

QD
type: SiteQuality
SIO_000300: 1.115e1

GenotypeQuality
all individuals: 72
bin: 1.25e1
variant carriers: 8

GenotypeQuality
all individuals: 36814
bin: 6.25e1
variant carriers: 31

GenotypeQuality
all individuals: 251
bin: 8.25e1
variant carriers: 39

GenotypeQuality
all individuals: 6997
bin: 2.25e1
variant carriers: 13

GenotypeQuality
all individuals: 115
bin: 1.75e1
variant carriers: 15

GenotypeQuality
all individuals: 513
bin: 7.75e1
variant carriers: 30

GenotypeQuality
all individuals: 89
bin: 8.75e1
variant carriers: 20

GenotypeQuality
all individuals: 912
bin: 2.75e1
variant carriers: 11

GenotypeQuality
all individuals: 642
bin: 7.25e1
variant carriers: 22

GenotypeQuality
all individuals: 2886
bin: 6.75e1
variant carriers: 27

GenotypeQuality
all individuals: 713
bin: 5.75e1
variant carriers: 24

GenotypeQuality
all individuals: 2747
bin: 9.75e1
variant carriers: 2029

GenotypeQuality
all individuals: 340
bin: 4.25e1
variant carriers: 24

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.355472721111488e-3
allele num: 5902
num of homozygotes: 0

Latino
type: Population
allele count: 188
allele frequency: 1.956702747710241e-2
allele num: 9608
num of homozygotes: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7420
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 5.768676088837611e-4
allele num: 13868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 72
allele frequency: 1.298232960692391e-3
allele num: 55460
num of homozygotes: 0

African
type: Population
allele count: 2455
allele frequency: 3.393696433508432e-1
allele num: 7234
num of homozygotes: 392

Other
type: Population
allele count: 10
allele frequency: 1.336898395721925e-2
allele num: 748
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

DP
type: SiteQuality
SIO_000300: 1.224391e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

QD
type: SiteQuality
SIO_000300: 1.574e1

VQSLOD
type: SiteQuality
SIO_000300: 1.076e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.504e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 816
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 3114
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 123
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 239
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 461
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variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.436781609195402e-4
allele num: 6960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.03950103950104e-4
allele num: 9620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.441077926288864e-4
allele num: 55514
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.208378088077336e-3
allele num: 7448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13886
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.205016e6

MQRankSum
type: SiteQuality
SIO_000300: 1.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.65e-1

FS
type: SiteQuality
SIO_000300: 4.141e0

QD
type: SiteQuality
SIO_000300: 1.086e1

GenotypeQuality
all individuals: 790
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38757
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
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variant carriers: 0

GenotypeQuality
all individuals: 780
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variant carriers: 0

GenotypeQuality
all individuals: 3164
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variant carriers: 0

GenotypeQuality
all individuals: 76
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variant carriers: 0

GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
all individuals: 122
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variant carriers: 0

GenotypeQuality
all individuals: 805
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variant carriers: 0

GenotypeQuality
all individuals: 107
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variant carriers: 0

GenotypeQuality
all individuals: 986
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variant carriers: 0

GenotypeQuality
all individuals: 233
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variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7534
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.430410527821485e-4
allele num: 13982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5982
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.139542355335023e-5
allele num: 56026
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.438848920863309e-4
allele num: 6950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 6.042e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 4.492e0

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

QD
type: SiteQuality
SIO_000300: 1.497e1

MQRankSum
type: SiteQuality
SIO_000300: 4.82e-1

DP
type: SiteQuality
SIO_000300: 1.214161e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
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variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 702
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variant carriers: 0

GenotypeQuality
all individuals: 232
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variant carriers: 0

GenotypeQuality
all individuals: 86
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variant carriers: 0

GenotypeQuality
all individuals: 77
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variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
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variant carriers: 0

GenotypeQuality
all individuals: 551
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variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 791
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5984
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 5.748778384593274e-4
allele num: 6958
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13994
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56086
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

DP
type: SiteQuality
SIO_000300: 1.21458e6

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-2

FS
type: SiteQuality
SIO_000300: 3.415e0

QD
type: SiteQuality
SIO_000300: 9.460000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

GenotypeQuality
all individuals: 7031
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
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variant carriers: 0

GenotypeQuality
all individuals: 704
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variant carriers: 0

GenotypeQuality
all individuals: 1131
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variant carriers: 0

GenotypeQuality
all individuals: 961
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variant carriers: 0

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
all individuals: 3159
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variant carriers: 0

GenotypeQuality
all individuals: 38934
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GenotypeQuality
all individuals: 769
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variant carriers: 0

GenotypeQuality
all individuals: 569
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GenotypeQuality
all individuals: 797
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variant carriers: 1

GenotypeQuality
all individuals: 234
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6946
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7540
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.133685261806249e-5
allele num: 14018
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56084
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.161e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.76e0

MQRankSum
type: SiteQuality
SIO_000300: 5.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.12e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.99e-1

FS
type: SiteQuality
SIO_000300: 1.143e0

DP
type: SiteQuality
SIO_000300: 1.214196e6

GenotypeQuality
all individuals: 874
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3125
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variant carriers: 0

GenotypeQuality
all individuals: 120
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variant carriers: 0

GenotypeQuality
all individuals: 550
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variant carriers: 0

GenotypeQuality
all individuals: 489
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variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38351
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variant carriers: 0

GenotypeQuality
all individuals: 110
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variant carriers: 0

GenotypeQuality
all individuals: 7136
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14026
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.566461000748956e-5
allele num: 56078
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5974
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

DP
type: SiteQuality
SIO_000300: 1.215955e6

FS
type: SiteQuality
SIO_000300: 1.473e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.627e0

QD
type: SiteQuality
SIO_000300: 1.011e1

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

GenotypeQuality
all individuals: 7190
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
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variant carriers: 0

GenotypeQuality
all individuals: 3154
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 685
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variant carriers: 0

GenotypeQuality
all individuals: 157
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GenotypeQuality
all individuals: 605
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GenotypeQuality
all individuals: 72
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GenotypeQuality
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GenotypeQuality
all individuals: 779
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GenotypeQuality
all individuals: 799
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variant carriers: 3

GenotypeQuality
all individuals: 108
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GenotypeQuality
all individuals: 101
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6912
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.022076860179886e-4
allele num: 9784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.781641961231471e-5
allele num: 56128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.126567844925884e-5
allele num: 14032
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.441e0

DP
type: SiteQuality
SIO_000300: 1.214929e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.51e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.006e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

QD
type: SiteQuality
SIO_000300: 9.640000000000001e0

FS
type: SiteQuality
SIO_000300: 1.819e0

VQSLOD
type: SiteQuality
SIO_000300: 1.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 793
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 168
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GenotypeQuality
all individuals: 37726
bin: 6.25e1
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GenotypeQuality
all individuals: 138
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GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 1252
bin: 5.25e1
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GenotypeQuality
all individuals: 223
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GenotypeQuality
all individuals: 800
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GenotypeQuality
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GenotypeQuality
all individuals: 108
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GenotypeQuality
all individuals: 678
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56048
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14012
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.449695563931574e-4
allele num: 6898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.43e-1

FS
type: SiteQuality
SIO_000300: 2.395e0

QD
type: SiteQuality
SIO_000300: 7.86e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.29e-1

DP
type: SiteQuality
SIO_000300: 1.215904e6

MQ
type: SiteQuality
SIO_000300: 5.899e1

VQSLOD
type: SiteQuality
SIO_000300: 1.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.95e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7288
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GenotypeQuality
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GenotypeQuality
all individuals: 793
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GenotypeQuality
all individuals: 912
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GenotypeQuality
all individuals: 37726
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56048
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.427347987439338e-4
allele num: 14012
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.025220422390814e-4
allele num: 9754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5972
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.84e-1

FS
type: SiteQuality
SIO_000300: 2.395e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

DP
type: SiteQuality
SIO_000300: 1.215904e6

QD
type: SiteQuality
SIO_000300: 7.86e0

MQRankSum
type: SiteQuality
SIO_000300: -5.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.58e-1

MQ
type: SiteQuality
SIO_000300: 5.899e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.95e-1

GenotypeQuality
all individuals: 372
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 38507
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 625
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1015
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 223
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 356
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3130
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 9.75e1
variant carriers: 149

African
type: Population
allele count: 3
allele frequency: 4.347826086956522e-4
allele num: 6900
num of homozygotes: 0

Latino
type: Population
allele count: 14
allele frequency: 1.431492842535787e-3
allele num: 9780
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5978
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 138
allele frequency: 2.459279324232812e-3
allele num: 56114
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14022
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.666666666666667e-3
allele num: 750
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.107e1

DP
type: SiteQuality
SIO_000300: 1.222526e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

GenotypeQuality
all individuals: 295
bin: 5.75e1
variant carriers: 5

GenotypeQuality
all individuals: 720
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 3007
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 709
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 113
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 795
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 7173
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 703
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 307
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 71
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 38058
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2351
bin: 9.75e1
variant carriers: 1726

GenotypeQuality
all individuals: 495
bin: 7.75e1
variant carriers: 6

Latino
type: Population
allele count: 58
allele frequency: 5.931683370832481e-3
allele num: 9778
num of homozygotes: 1

African
type: Population
allele count: 30
allele frequency: 4.347826086956522e-3
allele num: 6900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 199
allele frequency: 3.313353313353314e-2
allele num: 6006
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 858
allele frequency: 1.526744724011531e-2
allele num: 56198
num of homozygotes: 5

East Asian
type: Population
allele count: 241
allele frequency: 3.18446088794926e-2
allele num: 7568
num of homozygotes: 7

Other
type: Population
allele count: 19
allele frequency: 2.513227513227513e-2
allele num: 756
num of homozygotes: 0

South Asian
type: Population
allele count: 398
allele frequency: 2.816303424851401e-2
allele num: 14132
num of homozygotes: 4

VQSLOD
type: SiteQuality
SIO_000300: 5.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.77e-1

QD
type: SiteQuality
SIO_000300: 1.169e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.34e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

DP
type: SiteQuality
SIO_000300: 1.247467e6

GenotypeQuality
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7599
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 756
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3143
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9708
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.13063320022818e-5
allele num: 14024
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5948
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.216997e6

MQRankSum
type: SiteQuality
SIO_000300: -1.237e0

QD
type: SiteQuality
SIO_000300: 9.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.444e0

FS
type: SiteQuality
SIO_000300: 3.259e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.213e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

VQSLOD
type: SiteQuality
SIO_000300: -4.22e0

GenotypeQuality
all individuals: 3162
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1199
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7911
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38837
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5918
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55906
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.924831822170225e-4
allele num: 6838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14024
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.085e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.35e-1

DP
type: SiteQuality
SIO_000300: 1.214485e6

GenotypeQuality
all individuals: 38837
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7911
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3162
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 56
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7502
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.462415911085113e-4
allele num: 6838
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.426126640045636e-4
allele num: 14024
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.366150323757736e-5
allele num: 55906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5918
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.085e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

DP
type: SiteQuality
SIO_000300: 1.214485e6

GenotypeQuality
all individuals: 197
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8145
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37876
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 588
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.466705778820769e-4
allele num: 6818
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.337971635001338e-4
allele num: 7474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55736
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.141939168927603e-4
allele num: 14006
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.066e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

FS
type: SiteQuality
SIO_000300: 4.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.149e1

DP
type: SiteQuality
SIO_000300: 1.21131e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.99e-1

GenotypeQuality
all individuals: 109
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1192
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3141
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38557
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 711
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 77
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5886
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.339764201500536e-4
allele num: 7464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6782
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 5.631e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.067e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.08e-1

QD
type: SiteQuality
SIO_000300: 1.34e1

DP
type: SiteQuality
SIO_000300: 1.208719e6

GenotypeQuality
all individuals: 143
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37894
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3112
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8701
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13960
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6740
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.686005909213e-4
allele num: 7446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5866
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.62e-1

QD
type: SiteQuality
SIO_000300: 1.307e1

VQSLOD
type: SiteQuality
SIO_000300: 8.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.83e-1

DP
type: SiteQuality
SIO_000300: 1.20283e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.62e-1

GenotypeQuality
all individuals: 757
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9149
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 51
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.812053781756243e-5
allele num: 55186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13924
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5850
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
SIO_000300: 2.519e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.027e0

QD
type: SiteQuality
SIO_000300: 2.245e1

MQRankSum
type: SiteQuality
SIO_000300: 7.0e-1

MQ
type: SiteQuality
SIO_000300: 6.014e1

DP
type: SiteQuality
SIO_000300: 1.196211e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-1

GenotypeQuality
all individuals: 960
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
all individuals: 3074
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.443658138268917e-5
allele num: 55110
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.199999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.65e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.72e-1

DP
type: SiteQuality
SIO_000300: 1.194092e6

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

FS
type: SiteQuality
SIO_000300: 5.513e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1190
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.199424046076313e-5
allele num: 13890
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.199999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

FS
type: SiteQuality
SIO_000300: 5.513e0

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.65e-1

DP
type: SiteQuality
SIO_000300: 1.194092e6

GenotypeQuality
all individuals: 643
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
all individuals: 960
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55110
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5842
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.199424046076313e-5
allele num: 13890
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

FS
type: SiteQuality
SIO_000300: 5.513e0

QD
type: SiteQuality
SIO_000300: 9.199999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.194092e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

GenotypeQuality
all individuals: 786
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3041
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9412
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.355380862022228e-4
allele num: 7378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13920
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54976
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5818
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.84e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.13e0

DP
type: SiteQuality
SIO_000300: 1.194658e6

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

FS
type: SiteQuality
SIO_000300: 1.204e0

QD
type: SiteQuality
SIO_000300: 1.088e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.369e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 824
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3041
bin: 6.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 946
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1201
bin: 7.5e0
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GenotypeQuality
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bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 77
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 783
bin: 9.75e1
variant carriers: 204

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 523
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54976
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.688172043010753e-3
allele num: 744
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9412
num of homozygotes: 0

South Asian
type: Population
allele count: 215
allele frequency: 1.544540229885057e-2
allele num: 13920
num of homozygotes: 4

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6656
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

QD
type: SiteQuality
SIO_000300: 1.088e1

DP
type: SiteQuality
SIO_000300: 1.194658e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.204e0

VQSLOD
type: SiteQuality
SIO_000300: 2.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.84e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.369e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 801
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variant carriers: 0

GenotypeQuality
all individuals: 9882
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 580
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GenotypeQuality
all individuals: 1203
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 876
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54846
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.067235859124867e-4
allele num: 9370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7350
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.227522405319457e-5
allele num: 13836
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

DP
type: SiteQuality
SIO_000300: 1.183608e6

FS
type: SiteQuality
SIO_000300: 9.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

QD
type: SiteQuality
SIO_000300: 8.32e0

GenotypeQuality
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3010
bin: 6.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13818
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6616
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.129e1

VQSLOD
type: SiteQuality
SIO_000300: 8.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 5.853e0

MQRankSum
type: SiteQuality
SIO_000300: 2.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.181554e6

GenotypeQuality
all individuals: 122
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 3.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.25e1
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GenotypeQuality
all individuals: 43
bin: 8.75e1
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GenotypeQuality
all individuals: 578
bin: 7.25e1
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GenotypeQuality
all individuals: 37155
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 9.25e1
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GenotypeQuality
all individuals: 103
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.365374112506827e-4
allele num: 7324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13794
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.285e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

DP
type: SiteQuality
SIO_000300: 1.176233e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 898
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.863377184809749e-5
allele num: 53666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5670
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.1101243339254e-4
allele num: 9008
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7212
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.79e-1

FS
type: SiteQuality
SIO_000300: 2.062e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.899e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.155559e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.88e-1

QD
type: SiteQuality
SIO_000300: 1.178e1

GenotypeQuality
all individuals: 23578
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1744
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5070
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12714
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.304375236414071e-5
allele num: 47586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7394
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

QD
type: SiteQuality
SIO_000300: 8.210000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.51e-1

DP
type: SiteQuality
SIO_000300: 9.93107e5

VQSLOD
type: SiteQuality
SIO_000300: -7.932e-1

GenotypeQuality
all individuals: 229
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1854
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1965
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21241
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.946598855689765e-5
allele num: 12584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4978
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.31e0

DP
type: SiteQuality
SIO_000300: 9.71178e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-1

QD
type: SiteQuality
SIO_000300: 1.251e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

GenotypeQuality
all individuals: 157
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1965
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
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variant carriers: 1

GenotypeQuality
all individuals: 21773
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4986
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.637197118533071e-4
allele num: 6108
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.604e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.17e-1

DP
type: SiteQuality
SIO_000300: 9.68927e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.001e0

FS
type: SiteQuality
SIO_000300: 1.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

MQ
type: SiteQuality
SIO_000300: 5.907e1

MQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

QD
type: SiteQuality
SIO_000300: 1.297e1

VQSLOD
type: SiteQuality
SIO_000300: 3.39e-1

GenotypeQuality
all individuals: 2078
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 39
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1929
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7002
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.182548343445807e-5
allele num: 45818
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.328e-1

DP
type: SiteQuality
SIO_000300: 9.47695e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

FS
type: SiteQuality
SIO_000300: 2.187e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.068e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.56e0

QD
type: SiteQuality
SIO_000300: 1.232e1

GenotypeQuality
all individuals: 1811
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31386
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1404
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4024
bin: 7.5e0
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GenotypeQuality
all individuals: 574
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variant carriers: 1

GenotypeQuality
all individuals: 241
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5748
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.543105640608311e-5
allele num: 39322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11708
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

FS
type: SiteQuality
SIO_000300: 3.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.059e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

DP
type: SiteQuality
SIO_000300: 8.05724e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.671e0

QD
type: SiteQuality
SIO_000300: 9.57e0

GenotypeQuality
all individuals: 725
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 6897
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GenotypeQuality
all individuals: 141
bin: 5.25e1
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GenotypeQuality
all individuals: 165
bin: 5.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
all individuals: 257
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variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 7.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3930
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.836547291092746e-4
allele num: 10890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4232
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 1.658767772511848e-3
allele num: 4220
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.155172413793103e-4
allele num: 4640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.893446487505893e-5
allele num: 33936
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.189e1

MQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

DP
type: SiteQuality
SIO_000300: 7.17554e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

FS
type: SiteQuality
SIO_000300: 1.452e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.64e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
all individuals: 1635
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 140
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GenotypeQuality
all individuals: 571
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variant carriers: 3

GenotypeQuality
all individuals: 7281
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GenotypeQuality
all individuals: 34
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3850
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.319664492078285e-5
allele num: 10730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.086427267194157e-5
allele num: 32860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.83e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.47e0

FS
type: SiteQuality
SIO_000300: 2.118e0

QD
type: SiteQuality
SIO_000300: 1.407e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.61e-1

DP
type: SiteQuality
SIO_000300: 7.06172e5

GenotypeQuality
all individuals: 60
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31741
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 126
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GenotypeQuality
all individuals: 2542
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GenotypeQuality
all individuals: 569
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.318730917297226e-5
allele num: 30132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.274e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.16e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

MQRankSum
type: SiteQuality
SIO_000300: -6.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.22e-1

DP
type: SiteQuality
SIO_000300: 6.57285e5

QD
type: SiteQuality
SIO_000300: 9.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.25e-1

GenotypeQuality
all individuals: 86
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variant carriers: 1

GenotypeQuality
all individuals: 93
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GenotypeQuality
all individuals: 11281
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GenotypeQuality
all individuals: 174
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GenotypeQuality
all individuals: 486
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GenotypeQuality
all individuals: 154
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GenotypeQuality
all individuals: 4908
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GenotypeQuality
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GenotypeQuality
all individuals: 1602
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GenotypeQuality
all individuals: 980
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.583715596330275e-5
allele num: 27904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3460
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.001602564102564e-4
allele num: 9984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3274
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

QD
type: SiteQuality
SIO_000300: 6.99e0

DP
type: SiteQuality
SIO_000300: 6.29201e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.52e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.465e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.174e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.153999999999999e-1

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29545
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2422
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4444
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1526
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.785011355034065e-5
allele num: 26420
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.74e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.76e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.265e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 6.03415e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

GenotypeQuality
all individuals: 16690
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26233
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1408
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2203
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1693
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3568
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9086
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.770739064856712e-4
allele num: 2652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2886
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.059e0

VQSLOD
type: SiteQuality
SIO_000300: -1.764e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.482e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 5.39695e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.392e1

GenotypeQuality
all individuals: 2440
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3225
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8812
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2484
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 8.424599831508003e-4
allele num: 2374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2746
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.08e-2

DP
type: SiteQuality
SIO_000300: 5.21513e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.268e0

MQRankSum
type: SiteQuality
SIO_000300: 6.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

QD
type: SiteQuality
SIO_000300: 1.501e1

GenotypeQuality
all individuals: 62
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1841
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 450
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2746
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8812
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.501e1

VQSLOD
type: SiteQuality
SIO_000300: 2.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.268e0

DP
type: SiteQuality
SIO_000300: 5.21513e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.08e-2

GenotypeQuality
all individuals: 1696
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21156
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1895
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1976
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.45577792123951e-5
allele num: 15490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 992
num of homozygotes: 0