X-138689972-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138689972
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138689972
    reference: chr 0
allele count: 1
allele frequency: 1.294917449012625e-5
allele num: 77225
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1285-34G>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.157-34G>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1837-34G>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1582-34G>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1582-34G>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1402-34G>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.211-34G>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1450-34G>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1402-34G>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1630-34G>A
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8488
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3687
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13868
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD

X-138689976-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138689976
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138689976
    reference: chr 0
allele count: 1
allele frequency: 1.307360439273108e-5
allele num: 76490
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1450-38C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1630-38C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1582-38C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.211-38C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1837-38C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.157-38C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1402-38C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1582-38C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1285-38C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1402-38C>T
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14709
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9674
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

X-138689983-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138689983
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138689983
    reference: chr 0
allele count: 1
allele frequency: 1.33193036668043e-5
allele num: 75079
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.211-45A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1285-45A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1582-45A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1582-45A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1837-45A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1450-45A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1402-45A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.157-45A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1402-45A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1630-45A>G
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13779
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genotype depth: GenotypeDepth
  all individuals: 14848
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genotype depth: GenotypeDepth
  all individuals: 132
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 59
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genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10600
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5439
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 9289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
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genotype depth: GenotypeDepth
  all individuals: 474
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genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 2024
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2514
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-138689986-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138689986
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138689986
    reference: chr 0
allele count: 59
allele frequency: 7.894243891996039e-4
allele num: 74738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1402-48A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1582-48A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1450-48A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1837-48A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.211-48A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1582-48A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.157-48A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1630-48A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1285-48A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1402-48A>G
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9490
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13610
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10555
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14834
  bin: 2.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 11316
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3095
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum

X-138692431-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138692431
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138692431
    reference: chr 0
allele count: 1
allele frequency: 1.875046876171904e-5
allele num: 53332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1836+29A>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1629+29A>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.210+29A>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1401+29A>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.156+29A>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1284+29A>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1449+29A>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1581+29A>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1401+29A>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1581+29A>T
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10814
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1894
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

X-138692432-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138692432
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138692432
    reference: chr 0
allele count: 8
allele frequency: 1.497959030820507e-4
allele num: 53406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1836+28G>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1581+28G>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1401+28G>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1284+28G>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1581+28G>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1629+28G>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.156+28G>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1449+28G>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.210+28G>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1401+28G>C
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10661
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6964
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3074
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

X-138692447-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138692447
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138692447
    reference: chr 0
allele count: 1
allele frequency: 1.786384179781704e-5
allele num: 55979
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1449+13A>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1581+13A>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1401+13A>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1581+13A>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1836+13A>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.156+13A>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1401+13A>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1284+13A>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1629+13A>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.210+13A>C
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3071
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21311
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

X-138692462-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138692462
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138692462
    reference: chr 0
allele count: 1
allele frequency: 1.642386716376238e-5
allele num: 60887
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1399A>G
  hgvsp: ENSP00000359605.4:p.Lys467Glu
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.154A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1834A>G
  hgvsp: ENSP00000359610.4:p.Lys612Glu
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1282A>G
  hgvsp: ENSP00000438155.1:p.Lys428Glu
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.208A>G
  hgvsp: ENSP00000405848.1:p.Lys70Glu
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1579A>G
  hgvsp: ENSP00000427745.1:p.Lys527Glu
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1447A>G
  hgvsp: ENSP00000342204.6:p.Lys483Glu
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1579A>G
  hgvsp: ENSP00000397055.1:p.Lys527Glu
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1627A>G
  hgvsp: ENSP00000430276.1:p.Lys543Glu
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1399A>G
  hgvsp: ENSP00000359608.4:p.Lys467Glu
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20038
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys543Glu
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD

X-138692505-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138692505
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138692505
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 69895
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1592-8T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.119-8T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1799-8T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1544-8T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1364-8T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1412-8T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1364-8T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.173-8T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1544-8T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1247-8T>C
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6771
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30704
  bin: 6.25e1
  variant carriers: 0
hgvs: c.1592-8T>C
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

X-138692510-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138692510
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138692510
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 69720
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1412-13A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.173-13A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1247-13A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1799-13A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1364-13A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1544-13A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1544-13A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.119-13A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1592-13A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1364-13A>G
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14217
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2093
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

X-138692515-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138692515
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138692515
    reference: chr 0
allele count: 1
allele frequency: 1.438931737078393e-5
allele num: 69496
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.173-18T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1592-18T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1544-18T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1544-18T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1364-18T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1247-18T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1412-18T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1799-18T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1364-18T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.119-18T>C
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8894
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6459
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

X-138692530-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138692530
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138692530
    reference: chr 0
allele count: 1
allele frequency: 1.457152432715986e-5
allele num: 68627
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1592-33G>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1364-33G>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1544-33G>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1412-33G>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1247-33G>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.119-33G>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1799-33G>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1544-33G>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1364-33G>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.173-33G>A
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15085
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13035
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3081
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3794
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

X-138692542-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138692542
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138692542
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 64880
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1247-45A>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1364-45A>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1544-45A>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.119-45A>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1592-45A>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1799-45A>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1412-45A>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1364-45A>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1544-45A>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.173-45A>T
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14917
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3623
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14063
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6349
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4260
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5827
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ

X-138695361-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138695361
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138695361
    reference: chr 0
allele count: 1
allele frequency: 9.33968431867003e-5
allele num: 10707
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.172+1679T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1543+1679T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1363+1679T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1246+1679T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1363+1679T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1411+14T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.118+14T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1798+1679T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1543+1679T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1591+14T>C
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3615
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD

X-138695443-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138695443
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138695443
    reference: chr 0
allele count: 4
allele frequency: 3.625487174839119e-4
allele num: 11033
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1363+1597C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1363+1597C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1246+1597C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1798+1597C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1364-21C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.71-21C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1543+1597C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1543+1597C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.172+1597C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1544-21C>T
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
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genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 136
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

X-138695457-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138695457
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138695457
    reference: chr 0
allele count: 25
allele frequency: 2.288748512313467e-3
allele num: 10923
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.71-35T>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1798+1583T>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1544-35T>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1246+1583T>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1543+1583T>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1364-35T>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1363+1583T>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.172+1583T>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1543+1583T>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1363+1583T>G
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
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genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 108
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 64
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genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1149
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genotype depth: GenotypeDepth
  all individuals: 60
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genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 1366
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 184
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  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 59
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genotype depth: GenotypeDepth
  all individuals: 144
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genotype depth: GenotypeDepth
  all individuals: 638
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genotype depth: GenotypeDepth
  all individuals: 90
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genotype depth: GenotypeDepth
  all individuals: 58
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genotype depth: GenotypeDepth
  all individuals: 50
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genotype depth: GenotypeDepth
  all individuals: 603
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genotype quality: GenotypeQuality
  all individuals: 1825
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genotype quality: GenotypeQuality
  all individuals: 387
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum

X-138695471-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138695471
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138695471
    reference: chr 0
allele count: 39
allele frequency: 3.636702722864603e-3
allele num: 10724
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1363+1569A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1543+1569A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1364-49A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1798+1569A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1543+1569A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1246+1569A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.71-49A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1363+1569A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1544-49A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.172+1569A>G
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 64
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genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 512
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genotype quality: GenotypeQuality
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 3.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

X-138697001-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697001
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697001
    reference: chr 0
allele count: 1
allele frequency: 1.196988377242857e-5
allele num: 83543
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1798+39T>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1363+39T>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1543+39T>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.70+39T>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1543+39T>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1543+39T>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1363+39T>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1246+39T>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.172+39T>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1363+39T>A
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2690
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7156
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 5178
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 319
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genotype quality: GenotypeQuality
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

X-138697010-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697010
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697010
    reference: chr 0
allele count: 1
allele frequency: 1.192094032377274e-5
allele num: 83886
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1543+30T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.172+30T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1363+30T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1363+30T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1543+30T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1798+30T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1363+30T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1543+30T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.70+30T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1246+30T>C
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2951
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 753
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28957
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

X-138697014-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697014
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697014
    reference: chr 0
allele count: 1
allele frequency: 1.18914548005803e-5
allele num: 84094
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1798+26C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.70+26C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1543+26C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1363+26C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1543+26C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1246+26C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1363+26C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.172+26C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1543+26C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1363+26C>T
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 5216
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
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genotype depth: GenotypeDepth
  all individuals: 8624
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
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genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.25e1
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genotype depth: GenotypeDepth
  all individuals: 731
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genotype quality: GenotypeQuality
  all individuals: 1531
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genotype quality: GenotypeQuality
  all individuals: 96
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

X-138697018-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697018
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697018
    reference: chr 0
allele count: 1
allele frequency: 1.187169076619892e-5
allele num: 84234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1246+22G>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1543+22G>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1363+22G>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.70+22G>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1543+22G>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1363+22G>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1543+22G>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.172+22G>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1363+22G>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1798+22G>T
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3978
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genotype quality: GenotypeQuality
  all individuals: 2731
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 40
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

X-138697020-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697020
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697020
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 84462
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1543+20C>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1363+20C>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.70+20C>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1543+20C>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.172+20C>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1798+20C>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1363+20C>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1246+20C>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1543+20C>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1363+20C>G
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 8950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2388
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum

X-138697050-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697050
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697050
    reference: chr 0
allele count: 1
allele frequency: 1.156096094707392e-5
allele num: 86498
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1533A>G
  hgvsp: ENST00000520602.1:c.1533A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1353A>G
  hgvsp: ENST00000338585.6:c.1353A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1236A>G
  hgvsp: ENST00000536274.1:c.1236A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1533A>G
  hgvsp: ENST00000414978.1:c.1533A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.60A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1353A>G
  hgvsp: ENST00000370576.4:c.1353A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1788A>G
  hgvsp: ENST00000370578.4:c.1788A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.162A>G
  hgvsp: ENST00000446225.1:c.162A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1353A>G
  hgvsp: ENST00000370573.4:c.1353A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1533A>G
  hgvsp: ENST00000519895.1:c.1533A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser511Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

X-138697075-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697075
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697075
    reference: chr 0
allele count: 1
allele frequency: 1.143798325479251e-5
allele num: 87428
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1328T>C
  hgvsp: ENSP00000359605.4:p.Val443Ala
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1328T>C
  hgvsp: ENSP00000359608.4:p.Val443Ala
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1328T>C
  hgvsp: ENSP00000342204.6:p.Val443Ala
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.35T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1763T>C
  hgvsp: ENSP00000359610.4:p.Val588Ala
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.137T>C
  hgvsp: ENSP00000405848.1:p.Val46Ala
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1508T>C
  hgvsp: ENSP00000430276.1:p.Val503Ala
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1211T>C
  hgvsp: ENSP00000438155.1:p.Val404Ala
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1508T>C
  hgvsp: ENSP00000397055.1:p.Val503Ala
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1508T>C
  hgvsp: ENSP00000427745.1:p.Val503Ala
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2820
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val503Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

X-138697090-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697090
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697090
    reference: chr 0
allele count: 1
allele frequency: 1.142126182100598e-5
allele num: 87556
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1493C>T
  hgvsp: ENSP00000427745.1:p.Thr498Ile
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1196C>T
  hgvsp: ENSP00000438155.1:p.Thr399Ile
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1313C>T
  hgvsp: ENSP00000342204.6:p.Thr438Ile
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.122C>T
  hgvsp: ENSP00000405848.1:p.Thr41Ile
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1313C>T
  hgvsp: ENSP00000359605.4:p.Thr438Ile
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1313C>T
  hgvsp: ENSP00000359608.4:p.Thr438Ile
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1748C>T
  hgvsp: ENSP00000359610.4:p.Thr583Ile
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1493C>T
  hgvsp: ENSP00000430276.1:p.Thr498Ile
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1493C>T
  hgvsp: ENSP00000397055.1:p.Thr498Ile
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.20C>T
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr498Ile
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD

X-138697107-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697107
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697107
    reference: chr 0
allele count: 1
allele frequency: 1.141409183778293e-5
allele num: 87611
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1296C>G
  hgvsp: ENSP00000342204.6:p.Ile432Met
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1476C>G
  hgvsp: ENSP00000427745.1:p.Ile492Met
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1296C>G
  hgvsp: ENSP00000359608.4:p.Ile432Met
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1296C>G
  hgvsp: ENSP00000359605.4:p.Ile432Met
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1731C>G
  hgvsp: ENSP00000359610.4:p.Ile577Met
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1179C>G
  hgvsp: ENSP00000438155.1:p.Ile393Met
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1476C>G
  hgvsp: ENSP00000430276.1:p.Ile492Met
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1476C>G
  hgvsp: ENSP00000397055.1:p.Ile492Met
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.105C>G
  hgvsp: ENSP00000405848.1:p.Ile35Met
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.3C>G
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile492Met
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

X-138697109-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697109
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697109
    reference: chr 0
allele count: 2
allele frequency: 2.282583884957772e-5
allele num: 87620
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101977
  ensembl transcript: ENST00000483690
  gene symbol: MCF2
  hgvsc: ENST00000483690.1:n.1A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1729A>G
  hgvsp: ENSP00000359610.4:p.Ile577Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1474A>G
  hgvsp: ENSP00000430276.1:p.Ile492Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.103A>G
  hgvsp: ENSP00000405848.1:p.Ile35Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1294A>G
  hgvsp: ENSP00000359608.4:p.Ile432Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1294A>G
  hgvsp: ENSP00000359605.4:p.Ile432Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1177A>G
  hgvsp: ENSP00000438155.1:p.Ile393Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1474A>G
  hgvsp: ENSP00000427745.1:p.Ile492Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1474A>G
  hgvsp: ENSP00000397055.1:p.Ile492Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1294A>G
  hgvsp: ENSP00000342204.6:p.Ile432Val
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1986
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile492Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

X-138697111-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697111
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697111
    reference: chr 0
allele count: 1
allele frequency: 1.141383128074601e-5
allele num: 87613
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1472C>T
  hgvsp: ENSP00000397055.1:p.Pro491Leu
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1472C>T
  hgvsp: ENSP00000430276.1:p.Pro491Leu
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.101C>T
  hgvsp: ENSP00000405848.1:p.Pro34Leu
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1727C>T
  hgvsp: ENSP00000359610.4:p.Pro576Leu
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1175C>T
  hgvsp: ENSP00000438155.1:p.Pro392Leu
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1472C>T
  hgvsp: ENSP00000427745.1:p.Pro491Leu
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1292C>T
  hgvsp: ENSP00000359608.4:p.Pro431Leu
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1292C>T
  hgvsp: ENSP00000342204.6:p.Pro431Leu
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1292C>T
  hgvsp: ENSP00000359605.4:p.Pro431Leu
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7326
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4260
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15415
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro491Leu
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

X-138697116-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697116
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697116
    reference: chr 0
allele count: 1
allele frequency: 1.141396155777747e-5
allele num: 87612
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1467G>A
  hgvsp: ENST00000414978.1:c.1467G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1287G>A
  hgvsp: ENST00000370576.4:c.1287G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1722G>A
  hgvsp: ENST00000370578.4:c.1722G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1467G>A
  hgvsp: ENST00000520602.1:c.1467G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1467G>A
  hgvsp: ENST00000519895.1:c.1467G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1287G>A
  hgvsp: ENST00000338585.6:c.1287G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1287G>A
  hgvsp: ENST00000370573.4:c.1287G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1170G>A
  hgvsp: ENST00000536274.1:c.1170G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.96G>A
  hgvsp: ENST00000446225.1:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3138
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15420
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val489Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-138697130-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697130
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697130
    reference: chr 0
allele count: 1
allele frequency: 1.141291942478886e-5
allele num: 87620
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1156G>A
  hgvsp: ENSP00000438155.1:p.Ala386Thr
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1273G>A
  hgvsp: ENSP00000342204.6:p.Ala425Thr
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1453G>A
  hgvsp: ENSP00000427745.1:p.Ala485Thr
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1273G>A
  hgvsp: ENSP00000359608.4:p.Ala425Thr
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.82G>A
  hgvsp: ENSP00000405848.1:p.Ala28Thr
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1453G>A
  hgvsp: ENSP00000430276.1:p.Ala485Thr
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1708G>A
  hgvsp: ENSP00000359610.4:p.Ala570Thr
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1273G>A
  hgvsp: ENSP00000359605.4:p.Ala425Thr
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1453G>A
  hgvsp: ENSP00000397055.1:p.Ala485Thr
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12103
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala485Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum

X-138697133-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697133
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697133
    reference: chr 0
allele count: 1
allele frequency: 1.141252867397829e-5
allele num: 87623
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1450C>T
  hgvsp: ENST00000414978.1:c.1450C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.79C>T
  hgvsp: ENST00000446225.1:c.79C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1450C>T
  hgvsp: ENST00000519895.1:c.1450C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1450C>T
  hgvsp: ENST00000520602.1:c.1450C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1270C>T
  hgvsp: ENST00000370573.4:c.1270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1270C>T
  hgvsp: ENST00000370576.4:c.1270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1705C>T
  hgvsp: ENST00000370578.4:c.1705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1153C>T
  hgvsp: ENST00000536274.1:c.1153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1270C>T
  hgvsp: ENST00000338585.6:c.1270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4259
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu484Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum

X-138697153-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697153
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697153
    reference: chr 0
allele count: 1
allele frequency: 1.141448269564423e-5
allele num: 87608
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.59A>G
  hgvsp: ENSP00000405848.1:p.Gln20Arg
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1250A>G
  hgvsp: ENSP00000359605.4:p.Gln417Arg
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1430A>G
  hgvsp: ENSP00000427745.1:p.Gln477Arg
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1430A>G
  hgvsp: ENSP00000430276.1:p.Gln477Arg
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1430A>G
  hgvsp: ENSP00000397055.1:p.Gln477Arg
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1685A>G
  hgvsp: ENSP00000359610.4:p.Gln562Arg
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1133A>G
  hgvsp: ENSP00000438155.1:p.Gln378Arg
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1250A>G
  hgvsp: ENSP00000342204.6:p.Gln417Arg
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1250A>G
  hgvsp: ENSP00000359608.4:p.Gln417Arg
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7326
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28971
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln477Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ

X-138697164-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697164
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697164
    reference: chr 0
allele count: 1
allele frequency: 1.142308834616527e-5
allele num: 87542
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.48A>G
  hgvsp: ENSP00000405848.1:p.Ile16Met
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1419A>G
  hgvsp: ENSP00000427745.1:p.Ile473Met
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1674A>G
  hgvsp: ENSP00000359610.4:p.Ile558Met
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1239A>G
  hgvsp: ENSP00000359605.4:p.Ile413Met
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1419A>G
  hgvsp: ENSP00000430276.1:p.Ile473Met
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1239A>G
  hgvsp: ENSP00000342204.6:p.Ile413Met
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1419A>G
  hgvsp: ENSP00000397055.1:p.Ile473Met
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1122A>G
  hgvsp: ENSP00000438155.1:p.Ile374Met
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1239A>G
  hgvsp: ENSP00000359608.4:p.Ile413Met
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile473Met
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ

X-138697166-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697166
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697166
    reference: chr 0
allele count: 1
allele frequency: 1.142582922955633e-5
allele num: 87521
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1237A>G
  hgvsp: ENSP00000359608.4:p.Ile413Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1417A>G
  hgvsp: ENSP00000430276.1:p.Ile473Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1237A>G
  hgvsp: ENSP00000342204.6:p.Ile413Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1120A>G
  hgvsp: ENSP00000438155.1:p.Ile374Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1672A>G
  hgvsp: ENSP00000359610.4:p.Ile558Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1417A>G
  hgvsp: ENSP00000427745.1:p.Ile473Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.46A>G
  hgvsp: ENSP00000405848.1:p.Ile16Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1237A>G
  hgvsp: ENSP00000359605.4:p.Ile413Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1417A>G
  hgvsp: ENSP00000397055.1:p.Ile473Val
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3134
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile473Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

X-138697171-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697171
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697171
    reference: chr 0
allele count: 3
allele frequency: 3.430217933179355e-5
allele num: 87458
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1232G>A
  hgvsp: ENSP00000359608.4:p.Arg411Gln
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1115G>A
  hgvsp: ENSP00000438155.1:p.Arg372Gln
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1667G>A
  hgvsp: ENSP00000359610.4:p.Arg556Gln
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1412G>A
  hgvsp: ENSP00000430276.1:p.Arg471Gln
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1412G>A
  hgvsp: ENSP00000427745.1:p.Arg471Gln
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1232G>A
  hgvsp: ENSP00000342204.6:p.Arg411Gln
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.41G>A
  hgvsp: ENSP00000405848.1:p.Arg14Gln
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1232G>A
  hgvsp: ENSP00000359605.4:p.Arg411Gln
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1412G>A
  hgvsp: ENSP00000397055.1:p.Arg471Gln
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7320
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2688
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15030
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg471Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

X-138697172-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697172
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697172
    reference: chr 0
allele count: 2
allele frequency: 2.286968851484243e-5
allele num: 87452
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1411C>A
  hgvsp: ENST00000519895.1:c.1411C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1231C>A
  hgvsp: ENST00000370576.4:c.1231C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1411C>A
  hgvsp: ENST00000520602.1:c.1411C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1231C>A
  hgvsp: ENST00000370573.4:c.1231C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1411C>A
  hgvsp: ENST00000414978.1:c.1411C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1114C>A
  hgvsp: ENST00000536274.1:c.1114C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1666C>A
  hgvsp: ENST00000370578.4:c.1666C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1231C>A
  hgvsp: ENST00000338585.6:c.1231C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.40C>A
  hgvsp: ENST00000446225.1:c.40C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2688
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4222
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg471Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD

X-138697191-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697191
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697191
    reference: chr 0
allele count: 1
allele frequency: 1.148765077541643e-5
allele num: 87050
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1392A>G
  hgvsp: ENST00000414978.1:c.1392A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.21A>G
  hgvsp: ENST00000446225.1:c.21A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1647A>G
  hgvsp: ENST00000370578.4:c.1647A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1392A>G
  hgvsp: ENST00000520602.1:c.1392A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1212A>G
  hgvsp: ENST00000370576.4:c.1212A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1095A>G
  hgvsp: ENST00000536274.1:c.1095A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1212A>G
  hgvsp: ENST00000338585.6:c.1212A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1212A>G
  hgvsp: ENST00000370573.4:c.1212A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1392A>G
  hgvsp: ENST00000519895.1:c.1392A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2688
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14039
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gln464Gln
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-138697194-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697194
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697194
    reference: chr 0
allele count: 1
allele frequency: 1.149438499293095e-5
allele num: 86999
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1389A>G
  hgvsp: ENSP00000397055.1:p.Ile463Met
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1092A>G
  hgvsp: ENSP00000438155.1:p.Ile364Met
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1644A>G
  hgvsp: ENSP00000359610.4:p.Ile548Met
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1209A>G
  hgvsp: ENSP00000342204.6:p.Ile403Met
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.18A>G
  hgvsp: ENSP00000405848.1:p.Ile6Met
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1389A>G
  hgvsp: ENSP00000427745.1:p.Ile463Met
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1209A>G
  hgvsp: ENSP00000359605.4:p.Ile403Met
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1389A>G
  hgvsp: ENSP00000430276.1:p.Ile463Met
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1209A>G
  hgvsp: ENSP00000359608.4:p.Ile403Met
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7260
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14034
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile463Met
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: T
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

X-138697196-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697196
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697196
    reference: chr 0
allele count: 1
allele frequency: 1.150125938790298e-5
allele num: 86947
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1207A>G
  hgvsp: ENSP00000359605.4:p.Ile403Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1207A>G
  hgvsp: ENSP00000342204.6:p.Ile403Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1642A>G
  hgvsp: ENSP00000359610.4:p.Ile548Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1207A>G
  hgvsp: ENSP00000359608.4:p.Ile403Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1387A>G
  hgvsp: ENSP00000430276.1:p.Ile463Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1387A>G
  hgvsp: ENSP00000427745.1:p.Ile463Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1090A>G
  hgvsp: ENSP00000438155.1:p.Ile364Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.16A>G
  hgvsp: ENSP00000405848.1:p.Ile6Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1387A>G
  hgvsp: ENSP00000397055.1:p.Ile463Val
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile463Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD

X-138697205-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697205
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697205
    reference: chr 0
allele count: 1
allele frequency: 1.154094728095282e-5
allele num: 86648
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1633A>G
  hgvsp: ENSP00000359610.4:p.Met545Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1378A>G
  hgvsp: ENSP00000397055.1:p.Met460Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1198A>G
  hgvsp: ENSP00000342204.6:p.Met400Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1198A>G
  hgvsp: ENSP00000359608.4:p.Met400Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1198A>G
  hgvsp: ENSP00000359605.4:p.Met400Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1081A>G
  hgvsp: ENSP00000438155.1:p.Met361Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1378A>G
  hgvsp: ENSP00000430276.1:p.Met460Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1378A>G
  hgvsp: ENSP00000427745.1:p.Met460Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000405848
  ensembl transcript: ENST00000446225
  gene symbol: MCF2
  hgvsc: ENST00000446225.1:c.7A>G
  hgvsp: ENSP00000405848.1:p.Met3Val
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2688
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13143
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Met460Val
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD

X-138697214-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697214
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697214
    reference: chr 0
allele count: 5
allele frequency: 5.801338949029436e-5
allele num: 86187
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1075-3C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1372-3C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1192-3C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1372-3C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1192-3C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1627-3C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1372-3C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1192-3C>T
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7231
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2619
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12016
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1955
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
hgvs: c.1372-3C>T
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

X-138697215-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697215
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697215
    reference: chr 0
allele count: 8
allele frequency: 9.293140500667945e-5
allele num: 86085
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1372-4G>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1192-4G>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1192-4G>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1372-4G>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1627-4G>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1372-4G>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1192-4G>A
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1075-4G>A
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7244
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2806
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1372-4G>A
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

X-138697216-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697216
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697216
    reference: chr 0
allele count: 371
allele frequency: 4.310745491727087e-3
allele num: 86064
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1192-5C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1075-5C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1627-5C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1192-5C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1372-5C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1372-5C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1372-5C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1192-5C>T
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5213
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3918
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 8969
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8568
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 9.75e1
  variant carriers: 248
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7202
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3108
  bin: 5.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2764
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11748
  bin: 6.25e1
  variant carriers: 0
hgvs: c.1372-5C>T
num of homozygotes: 4
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

X-138697216-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697216
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697216
    reference: chr 0
allele count: 2
allele frequency: 2.323852017103551e-5
allele num: 86064
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1192-5C>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1075-5C>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1192-5C>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1627-5C>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1372-5C>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1372-5C>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1192-5C>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1372-5C>G
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8568
  bin: 2.75e1
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genotype depth: GenotypeDepth
  all individuals: 3108
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2764
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1372-5C>G
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

X-138697221-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697221
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697221
    reference: chr 0
allele count: 1
allele frequency: 1.165053068167255e-5
allele num: 85833
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1372-10C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1192-10C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1372-10C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1192-10C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1627-10C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1192-10C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1075-10C>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1372-10C>T
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8582
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genotype depth: GenotypeDepth
  all individuals: 2893
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

X-138697228-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697228
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697228
    reference: chr 0
allele count: 1
allele frequency: 1.171852112263432e-5
allele num: 85335
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1192-17T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1372-17T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1192-17T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1372-17T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1372-17T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1627-17T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1075-17T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1192-17T>C
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 737
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2897
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-138697233-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697233
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697233
    reference: chr 0
allele count: 4
allele frequency: 4.696323952426238e-5
allele num: 85173
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1192-22A>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1372-22A>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1192-22A>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1627-22A>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1372-22A>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1075-22A>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1372-22A>T
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1192-22A>T
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 1934
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1526
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3922
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

X-138697239-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697239
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697239
    reference: chr 0
allele count: 1
allele frequency: 1.178967224711153e-5
allele num: 84820
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1192-28T>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1192-28T>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1075-28T>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1372-28T>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1627-28T>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1372-28T>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1372-28T>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1192-28T>G
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5219
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7447
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 355
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28990
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

X-138697242-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697242
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697242
    reference: chr 0
allele count: 1
allele frequency: 1.180526042404495e-5
allele num: 84708
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1192-31A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1372-31A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1075-31A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1192-31A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1372-31A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1627-31A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1192-31A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1372-31A>G
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3114
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5219
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 713
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP

X-138697246-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697246
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697246
    reference: chr 0
allele count: 40309
allele frequency: 4.784621410851425e-1
allele num: 84247
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1192-35T>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1372-35T>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1192-35T>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1627-35T>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1192-35T>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1372-35T>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1075-35T>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1372-35T>G
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 1.75e1
  variant carriers: 740
genotype depth: GenotypeDepth
  all individuals: 3208
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  variant carriers: 2090
genotype depth: GenotypeDepth
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  variant carriers: 8212
genotype depth: GenotypeDepth
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  variant carriers: 1418
genotype depth: GenotypeDepth
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  variant carriers: 577
genotype depth: GenotypeDepth
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  variant carriers: 808
genotype depth: GenotypeDepth
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  variant carriers: 2276
genotype depth: GenotypeDepth
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  variant carriers: 1860
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 891
genotype depth: GenotypeDepth
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  variant carriers: 1939
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1984
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genotype depth: GenotypeDepth
  all individuals: 2508
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  variant carriers: 1657
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 2.75e1
  variant carriers: 1072
genotype depth: GenotypeDepth
  all individuals: 1614
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  variant carriers: 1386
genotype quality: GenotypeQuality
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  variant carriers: 197
genotype quality: GenotypeQuality
  all individuals: 1877
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 678
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genotype quality: GenotypeQuality
  all individuals: 347
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  variant carriers: 159
num of homozygotes: 6705
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum

X-138697247-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697247
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697247
    reference: chr 0
allele count: 1
allele frequency: 1.191568461565959e-5
allele num: 83923
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1372-36A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1627-36A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1192-36A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1372-36A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1192-36A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1192-36A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1075-36A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1372-36A>G
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 871
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
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genotype quality: GenotypeQuality
  all individuals: 437
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

X-138697252-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697252
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697252
    reference: chr 0
allele count: 1
allele frequency: 1.19591475519625e-5
allele num: 83618
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1627-41A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1372-41A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1372-41A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1372-41A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1192-41A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1192-41A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1075-41A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1192-41A>G
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
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genotype depth: GenotypeDepth
  all individuals: 3029
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

X-138697261-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138697261
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138697262
    reference: chr 0
allele count: 1
allele frequency: 1.204674135646308e-5
allele num: 83010
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1192-51dupT
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1372-51dupT
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1372-51dupT
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1372-51dupT
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1075-51dupT
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1192-51dupT
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1627-51dupT
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1192-51dupT
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 211
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-138698400-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138698400
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138698400
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 10439
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1074+41T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1191+41T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1626+41T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1371+41T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1371+41T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1371+41T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1191+41T>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1191+41T>C
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3149
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: A
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

X-138698407-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138698407
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138698407
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 10971
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1074+34A>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1191+34A>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1371+34A>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1191+34A>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1626+34A>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1191+34A>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1371+34A>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1371+34A>C
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29822
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3299
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25473
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16064
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

X-138698408-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138698408
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138698408
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 11076
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1191+33A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1191+33A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1074+33A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1371+33A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1626+33A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1371+33A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1371+33A>G
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1191+33A>G
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20332
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29318
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3030
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25414
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

X-138698415-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138698415
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138698415
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 12802
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1371+26A>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1191+26A>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1371+26A>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1074+26A>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1371+26A>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1626+26A>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1191+26A>C
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1191+26A>C
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24440
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22655
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24084
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP

X-138698448-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138698448
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138698448
    reference: chr 0
allele count: 1
allele frequency: 1.861365497729134e-5
allele num: 53724
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1184A>G
  hgvsp: ENSP00000359605.4:p.Glu395Gly
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1364A>G
  hgvsp: ENSP00000397055.1:p.Glu455Gly
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1619A>G
  hgvsp: ENSP00000359610.4:p.Glu540Gly
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1184A>G
  hgvsp: ENSP00000342204.6:p.Glu395Gly
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1184A>G
  hgvsp: ENSP00000359608.4:p.Glu395Gly
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1067A>G
  hgvsp: ENSP00000438155.1:p.Glu356Gly
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1364A>G
  hgvsp: ENSP00000430276.1:p.Glu455Gly
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1364A>G
  hgvsp: ENSP00000427745.1:p.Glu455Gly
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2306
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu455Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS

X-138698458-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138698458
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138698458
    reference: chr 0
allele count: 1
allele frequency: 1.617207083367025e-5
allele num: 61835
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1174T>G
  hgvsp: ENSP00000342204.6:p.Leu392Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1057T>G
  hgvsp: ENSP00000438155.1:p.Leu353Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1174T>G
  hgvsp: ENSP00000359608.4:p.Leu392Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1354T>G
  hgvsp: ENSP00000397055.1:p.Leu452Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1354T>G
  hgvsp: ENSP00000430276.1:p.Leu452Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1174T>G
  hgvsp: ENSP00000359605.4:p.Leu392Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1609T>G
  hgvsp: ENSP00000359610.4:p.Leu537Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1354T>G
  hgvsp: ENSP00000427745.1:p.Leu452Val
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20956
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu452Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

X-138698461-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138698461
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138698461
    reference: chr 0
allele count: 1
allele frequency: 1.573440327275588e-5
allele num: 63555
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1606A>G
  hgvsp: ENSP00000359610.4:p.Ile536Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1171A>G
  hgvsp: ENSP00000342204.6:p.Ile391Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1171A>G
  hgvsp: ENSP00000359608.4:p.Ile391Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1351A>G
  hgvsp: ENSP00000397055.1:p.Ile451Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1351A>G
  hgvsp: ENSP00000430276.1:p.Ile451Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1351A>G
  hgvsp: ENSP00000427745.1:p.Ile451Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1054A>G
  hgvsp: ENSP00000438155.1:p.Ile352Val
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1171A>G
  hgvsp: ENSP00000359605.4:p.Ile391Val
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30598
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19844
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile451Val
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD

X-138698463-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138698463
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138698463
    reference: chr 0
allele count: 1
allele frequency: 1.54667079112211e-5
allele num: 64655
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1349T>A
  hgvsp: ENSP00000397055.1:p.Val450Glu
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1169T>A
  hgvsp: ENSP00000359608.4:p.Val390Glu
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1604T>A
  hgvsp: ENSP00000359610.4:p.Val535Glu
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1052T>A
  hgvsp: ENSP00000438155.1:p.Val351Glu
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1169T>A
  hgvsp: ENSP00000359605.4:p.Val390Glu
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1169T>A
  hgvsp: ENSP00000342204.6:p.Val390Glu
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1349T>A
  hgvsp: ENSP00000427745.1:p.Val450Glu
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1349T>A
  hgvsp: ENSP00000430276.1:p.Val450Glu
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30868
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val450Glu
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

X-138698472-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138698472
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138698472
    reference: chr 0
allele count: 3
allele frequency: 4.294610264118531e-5
allele num: 69855
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1340A>C
  hgvsp: ENSP00000430276.1:p.Glu447Ala
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1043A>C
  hgvsp: ENSP00000438155.1:p.Glu348Ala
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1340A>C
  hgvsp: ENSP00000397055.1:p.Glu447Ala
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1340A>C
  hgvsp: ENSP00000427745.1:p.Glu447Ala
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1595A>C
  hgvsp: ENSP00000359610.4:p.Glu532Ala
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1160A>C
  hgvsp: ENSP00000342204.6:p.Glu387Ala
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1160A>C
  hgvsp: ENSP00000359608.4:p.Glu387Ala
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1160A>C
  hgvsp: ENSP00000359605.4:p.Glu387Ala
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3575
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35155
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu447Ala
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

X-138698481-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138698481
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138698481
    reference: chr 0
allele count: 1
allele frequency: 1.338741850408986e-5
allele num: 74697
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1331T>G
  hgvsp: ENSP00000397055.1:p.Leu444Arg
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1331T>G
  hgvsp: ENSP00000430276.1:p.Leu444Arg
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1331T>G
  hgvsp: ENSP00000427745.1:p.Leu444Arg
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1151T>G
  hgvsp: ENSP00000359608.4:p.Leu384Arg
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1034T>G
  hgvsp: ENSP00000438155.1:p.Leu345Arg
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1151T>G
  hgvsp: ENSP00000359605.4:p.Leu384Arg
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1151T>G
  hgvsp: ENSP00000342204.6:p.Leu384Arg
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1586T>G
  hgvsp: ENSP00000359610.4:p.Leu529Arg
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3452
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu444Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-138698485-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138698485
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138698485
    reference: chr 0
allele count: 11
allele frequency: 1.44649291218473e-4
allele num: 76046
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1147A>G
  hgvsp: ENSP00000359608.4:p.Thr383Ala
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1327A>G
  hgvsp: ENSP00000397055.1:p.Thr443Ala
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1327A>G
  hgvsp: ENSP00000427745.1:p.Thr443Ala
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1327A>G
  hgvsp: ENSP00000430276.1:p.Thr443Ala
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1147A>G
  hgvsp: ENSP00000359605.4:p.Thr383Ala
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1582A>G
  hgvsp: ENSP00000359610.4:p.Thr528Ala
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1030A>G
  hgvsp: ENSP00000438155.1:p.Thr344Ala
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1147A>G
  hgvsp: ENSP00000342204.6:p.Thr383Ala
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39316
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr443Ala
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

X-138698490-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138698490
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138698490
    reference: chr 0
allele count: 1
allele frequency: 1.285462702299693e-5
allele num: 77793
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1577C>A
  hgvsp: ENSP00000359610.4:p.Pro526His
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1142C>A
  hgvsp: ENSP00000359605.4:p.Pro381His
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1322C>A
  hgvsp: ENSP00000397055.1:p.Pro441His
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1142C>A
  hgvsp: ENSP00000342204.6:p.Pro381His
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1322C>A
  hgvsp: ENSP00000427745.1:p.Pro441His
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1142C>A
  hgvsp: ENSP00000359608.4:p.Pro381His
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1025C>A
  hgvsp: ENSP00000438155.1:p.Pro342His
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1322C>A
  hgvsp: ENSP00000430276.1:p.Pro441His
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3751
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8653
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro441His
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

X-138698511-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138698511
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138698511
    reference: chr 0
allele count: 11
allele frequency: 1.338622922092146e-4
allele num: 82174
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1301T>A
  hgvsp: ENSP00000397055.1:p.Leu434Gln
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1556T>A
  hgvsp: ENSP00000359610.4:p.Leu519Gln
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1004T>A
  hgvsp: ENSP00000438155.1:p.Leu335Gln
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1301T>A
  hgvsp: ENSP00000427745.1:p.Leu434Gln
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1121T>A
  hgvsp: ENSP00000359608.4:p.Leu374Gln
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1121T>A
  hgvsp: ENSP00000342204.6:p.Leu374Gln
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1301T>A
  hgvsp: ENSP00000430276.1:p.Leu434Gln
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1121T>A
  hgvsp: ENSP00000359605.4:p.Leu374Gln
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42681
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7101
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu434Gln
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

X-138698512-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138698512
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138698512
    reference: chr 0
allele count: 2
allele frequency: 2.429631789302331e-5
allele num: 82317
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1120C>T
  hgvsp: ENST00000370573.4:c.1120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1300C>T
  hgvsp: ENST00000519895.1:c.1300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1300C>T
  hgvsp: ENST00000520602.1:c.1300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1555C>T
  hgvsp: ENST00000370578.4:c.1555C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1120C>T
  hgvsp: ENST00000370576.4:c.1120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.1003C>T
  hgvsp: ENST00000536274.1:c.1003C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1120C>T
  hgvsp: ENST00000338585.6:c.1120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1300C>T
  hgvsp: ENST00000414978.1:c.1300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42756
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4291
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu434Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

X-138698533-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138698533
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138698533
    reference: chr 0
allele count: 118
allele frequency: 1.391328954970464e-3
allele num: 84811
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1099G>A
  hgvsp: ENSP00000342204.6:p.Glu367Lys
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1279G>A
  hgvsp: ENSP00000427745.1:p.Glu427Lys
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1279G>A
  hgvsp: ENSP00000430276.1:p.Glu427Lys
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.982G>A
  hgvsp: ENSP00000438155.1:p.Glu328Lys
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1099G>A
  hgvsp: ENSP00000359608.4:p.Glu367Lys
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1099G>A
  hgvsp: ENSP00000359605.4:p.Glu367Lys
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1534G>A
  hgvsp: ENSP00000359610.4:p.Glu512Lys
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1279G>A
  hgvsp: ENSP00000397055.1:p.Glu427Lys
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 44397
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8212
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 2
hgvs: p.Glu427Lys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

X-138698550-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138698550
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138698550
    reference: chr 0
allele count: 1
allele frequency: 1.167828656179565e-5
allele num: 85629
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1262A>G
  hgvsp: ENSP00000397055.1:p.Lys421Arg
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1082A>G
  hgvsp: ENSP00000342204.6:p.Lys361Arg
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1262A>G
  hgvsp: ENSP00000430276.1:p.Lys421Arg
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1517A>G
  hgvsp: ENSP00000359610.4:p.Lys506Arg
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.965A>G
  hgvsp: ENSP00000438155.1:p.Lys322Arg
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1082A>G
  hgvsp: ENSP00000359608.4:p.Lys361Arg
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1262A>G
  hgvsp: ENSP00000427745.1:p.Lys421Arg
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1082A>G
  hgvsp: ENSP00000359605.4:p.Lys361Arg
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1006
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys421Arg
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

X-138698557-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138698557
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138698557
    reference: chr 0
allele count: 1
allele frequency: 1.166493636777211e-5
allele num: 85727
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1255G>A
  hgvsp: ENSP00000430276.1:p.Ala419Thr
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1075G>A
  hgvsp: ENSP00000342204.6:p.Ala359Thr
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1075G>A
  hgvsp: ENSP00000359608.4:p.Ala359Thr
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.958G>A
  hgvsp: ENSP00000438155.1:p.Ala320Thr
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1075G>A
  hgvsp: ENSP00000359605.4:p.Ala359Thr
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1255G>A
  hgvsp: ENSP00000397055.1:p.Ala419Thr
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1510G>A
  hgvsp: ENSP00000359610.4:p.Ala504Thr
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1255G>A
  hgvsp: ENSP00000427745.1:p.Ala419Thr
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1671
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4826
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49408
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala419Thr
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

X-138698559-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24138698559
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24138698559
    reference: chr 0
allele count: 1
allele frequency: 1.166167158400485e-5
allele num: 85751
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359608
  ensembl transcript: ENST00000370576
  gene symbol: MCF2
  hgvsc: ENST00000370576.4:c.1073A>G
  hgvsp: ENSP00000359608.4:p.Asp358Gly
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359605
  ensembl transcript: ENST00000370573
  gene symbol: MCF2
  hgvsc: ENST00000370573.4:c.1073A>G
  hgvsp: ENSP00000359605.4:p.Asp358Gly
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000427745
  ensembl transcript: ENST00000520602
  gene symbol: MCF2
  hgvsc: ENST00000520602.1:c.1253A>G
  hgvsp: ENSP00000427745.1:p.Asp418Gly
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000397055
  ensembl transcript: ENST00000414978
  gene symbol: MCF2
  hgvsc: ENST00000414978.1:c.1253A>G
  hgvsp: ENSP00000397055.1:p.Asp418Gly
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000438155
  ensembl transcript: ENST00000536274
  gene symbol: MCF2
  hgvsc: ENST00000536274.1:c.956A>G
  hgvsp: ENSP00000438155.1:p.Asp319Gly
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000342204
  ensembl transcript: ENST00000338585
  gene symbol: MCF2
  hgvsc: ENST00000338585.6:c.1073A>G
  hgvsp: ENSP00000342204.6:p.Asp358Gly
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000359610
  ensembl transcript: ENST00000370578
  gene symbol: MCF2
  hgvsc: ENST00000370578.4:c.1508A>G
  hgvsp: ENSP00000359610.4:p.Asp503Gly
  variant of: http://identifiers.org/hgnc/6940
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101977
  ensembl protein: ENSP00000430276
  ensembl transcript: ENST00000519895
  gene symbol: MCF2
  hgvsc: ENST00000519895.1:c.1253A>G
  hgvsp: ENSP00000430276.1:p.Asp418Gly
  variant of: http://identifiers.org/hgnc/6940
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp418Gly
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 1085
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5638
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17807
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1933
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3886
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1120
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2394
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2823
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1128
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6055
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41285
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.139341460635753e-4
allele num: 8777
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4197
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8907
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.66e-1

QD
type: SiteQuality
SIO_000300: 1.477e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.241e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.16328e6

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

GenotypeQuality
all individuals: 5900
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1045
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3933
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13628
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2391
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1344
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 912
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2752
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8749
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.39406272444338e-4
allele num: 4177
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40791
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6004
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8865
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.873e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.037e0

VQSLOD
type: SiteQuality
SIO_000300: -3.695e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.449e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.92e0

QD
type: SiteQuality
SIO_000300: 3.63e0

DP
type: SiteQuality
SIO_000300: 1.146899e6

GenotypeQuality
all individuals: 6212
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12558
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2604
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4943
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1705
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2683
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11843
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3958
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2389
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5913
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4134
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8765
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8690
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.509095471082675e-5
allele num: 39855
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.505e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.177e0

VQSLOD
type: SiteQuality
SIO_000300: -2.67e0

DP
type: SiteQuality
SIO_000300: 1.127487e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.984e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

GenotypeQuality
all individuals: 2431
bin: 9.75e1
variant carriers: 47

GenotypeQuality
all individuals: 886
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 3

GenotypeQuality
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bin: 2.75e1
variant carriers: 3

GenotypeQuality
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bin: 5.25e1
variant carriers: 2

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 706
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2217
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5009
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 274
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2355
bin: 1.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2548
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11749
bin: 6.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5899
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.154467790348649e-4
allele num: 8662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 50
allele frequency: 1.261734127384677e-3
allele num: 39628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8745
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.201092283993838e-4
allele num: 7141
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.834862385321101e-3
allele num: 545
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 9.713453132588635e-4
allele num: 4118
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.126782e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.07e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.151e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e-1

GenotypeQuality
all individuals: 2063
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11716
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 415
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26841
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7084
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.497502497502498e-4
allele num: 4004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2692
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.078965e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.21e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.31e1

VQSLOD
type: SiteQuality
SIO_000300: 3.97e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

GenotypeQuality
all individuals: 351
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4326
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6420
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19025
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3305
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
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variant carriers: 0

GenotypeQuality
all individuals: 1934
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1738
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2446
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 657
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 12087
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 419
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4017
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 1.128031584884377e-3
allele num: 7092
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.272e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.03e-2

QD
type: SiteQuality
SIO_000300: 1.219e1

DP
type: SiteQuality
SIO_000300: 1.08329e6

GenotypeQuality
all individuals: 318
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4294
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1300
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2593
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17330
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.525098702763678e-5
allele num: 28368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2824
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4330
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6789
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7344
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQRankSum
type: SiteQuality
SIO_000300: -1.202e0

MQ
type: SiteQuality
SIO_000300: 5.912e1

DP
type: SiteQuality
SIO_000300: 1.157442e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

FS
type: SiteQuality
SIO_000300: 5.895e0

VQSLOD
type: SiteQuality
SIO_000300: -2.895e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.942e0

QD
type: SiteQuality
SIO_000300: 3.26e0

GenotypeDepth
all individuals: 184
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2460
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1557
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3069
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 588
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.286670097786928e-4
allele num: 7772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 459
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3083
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31281
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4868
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.53e-1

DP
type: SiteQuality
SIO_000300: 1.253367e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e0

VQSLOD
type: SiteQuality
SIO_000300: -4.245e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.32e0

FS
type: SiteQuality
SIO_000300: 1.957e0

QD
type: SiteQuality
SIO_000300: 1.224e1

GenotypeQuality
all individuals: 313
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3069
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18048
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2175
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 305
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5671
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36765
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7875
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.685e1

DP
type: SiteQuality
SIO_000300: 1.358379e6

VQSLOD
type: SiteQuality
SIO_000300: 4.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 132
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 943
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18934
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 597
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3069
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29408
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 511
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3641
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7841
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6956
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8429
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36680
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.13e0

QD
type: SiteQuality
SIO_000300: 1.691e1

DP
type: SiteQuality
SIO_000300: 1.34242e6

GenotypeQuality
all individuals: 1287
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3068
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26976
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20260
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2029
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3641
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6927
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.736277567996498e-5
allele num: 36546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8401
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7823
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.258e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.777e1

DP
type: SiteQuality
SIO_000300: 1.315435e6

VQSLOD
type: SiteQuality
SIO_000300: -6.649e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

GenotypeQuality
all individuals: 180
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1590
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22602
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1569
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3065
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 181
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3496
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3106
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17109
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3597
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 503
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36141
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.472754050073638e-4
allele num: 6790
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7648
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.213324e6

FS
type: SiteQuality
SIO_000300: 2.831e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.426e0

VQSLOD
type: SiteQuality
SIO_000300: -1.513e0

MQ
type: SiteQuality
SIO_000300: 5.766e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

QD
type: SiteQuality
SIO_000300: 6.03e0

GenotypeQuality
all individuals: 360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 2.5e0
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 2951
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1510
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6769
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3967
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2972
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16821
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 507
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33935
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8207
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7257
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6363
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3391
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 477
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.23e-2

DP
type: SiteQuality
SIO_000300: 1.137458e6

VQSLOD
type: SiteQuality
SIO_000300: 1.14e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.412e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 734
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 7.25e1
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GenotypeQuality
all individuals: 269
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1818
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1251
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.534854245880862e-4
allele num: 3945
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 375
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 213
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 733
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4058
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.076e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.21317e5

VQSLOD
type: SiteQuality
SIO_000300: 5.22e-1

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 7.5e0
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GenotypeQuality
all individuals: 303
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 7.25e1
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GenotypeQuality
all individuals: 3260
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1820
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1251
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4032
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 9.310986964618249e-4
allele num: 4296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 373
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 211
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 138
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 1.475e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.414e0

FS
type: SiteQuality
SIO_000300: 2.776e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-3

DP
type: SiteQuality
SIO_000300: 3.23158e5

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

GenotypeQuality
all individuals: 191
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 21

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.997501249375312e-4
allele num: 4002
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 137
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1251
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.372479240806643e-4
allele num: 4215
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 2.997275204359673e-2
allele num: 734
num of homozygotes: 1

DP
type: SiteQuality
SIO_000300: 3.11351e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.47e0

QD
type: SiteQuality
SIO_000300: 1.537e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.735e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

GenotypeQuality
all individuals: 111
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 705
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 230
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variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 7.5e0
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GenotypeQuality
all individuals: 413
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variant carriers: 0

GenotypeQuality
all individuals: 884
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variant carriers: 3

GenotypeQuality
all individuals: 290
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variant carriers: 2

GenotypeQuality
all individuals: 137
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1826
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variant carriers: 13

GenotypeQuality
all individuals: 201
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 375
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 262
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.36986301369863e-3
allele num: 730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1251
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 207
num of homozygotes: 0

South Asian
type: Population
allele count: 38
allele frequency: 9.343496434718466e-3
allele num: 4067
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 135
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 373
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3961
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.38e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.798e0

DP
type: SiteQuality
SIO_000300: 3.08277e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-2

FS
type: SiteQuality
SIO_000300: 2.951e0

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

QD
type: SiteQuality
SIO_000300: 2.223e1

GenotypeQuality
all individuals: 169
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 120
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GenotypeQuality
all individuals: 838
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2361
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3044
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 28942
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1499
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variant carriers: 0

GenotypeQuality
all individuals: 2752
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.547508511296812e-4
allele num: 6462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9119
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.669362e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.087e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.32e0

MQRankSum
type: SiteQuality
SIO_000300: 2.35e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

QD
type: SiteQuality
SIO_000300: 1.512e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.755e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.89e-1

GenotypeQuality
all individuals: 386
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
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variant carriers: 0

GenotypeQuality
all individuals: 3101
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2806
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
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variant carriers: 0

GenotypeQuality
all individuals: 60
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variant carriers: 0

GenotypeQuality
all individuals: 113
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GenotypeQuality
all individuals: 2870
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variant carriers: 0

GenotypeQuality
all individuals: 121
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variant carriers: 0

GenotypeQuality
all individuals: 411
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variant carriers: 0

GenotypeQuality
all individuals: 2386
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variant carriers: 0

GenotypeQuality
all individuals: 1928
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variant carriers: 0

GenotypeQuality
all individuals: 3933
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10397
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.128610655824943e-5
allele num: 46979
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9128
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 597
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7836
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.296e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

VQSLOD
type: SiteQuality
SIO_000300: -1.897e0

DP
type: SiteQuality
SIO_000300: 2.690424e6

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.19e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e-1

QD
type: SiteQuality
SIO_000300: 2.178e1

GenotypeQuality
all individuals: 2844
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 113
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variant carriers: 0

GenotypeQuality
all individuals: 51
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variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
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variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2384
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GenotypeQuality
all individuals: 3109
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
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GenotypeQuality
all individuals: 3957
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variant carriers: 0

GenotypeQuality
all individuals: 28959
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10788
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2805
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1929
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47054
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9131
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.536098310291859e-4
allele num: 6510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4505
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.616e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.32e-1

QD
type: SiteQuality
SIO_000300: 1.706e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.66e-1

DP
type: SiteQuality
SIO_000300: 2.696662e6

MQ
type: SiteQuality
SIO_000300: 5.928e1

VQSLOD
type: SiteQuality
SIO_000300: -8.858e-1

GenotypeQuality
all individuals: 123
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 7.5e0
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GenotypeQuality
all individuals: 95
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1942
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GenotypeQuality
all individuals: 77
bin: 5.25e1
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GenotypeQuality
all individuals: 570
bin: 3.25e1
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GenotypeQuality
all individuals: 3112
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2388
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11038
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28963
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.2531328320802e-4
allele num: 7980
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6531
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47090
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9135
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.702331e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.76e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

MQRankSum
type: SiteQuality
SIO_000300: -1.308e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.288e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.27e-1

QD
type: SiteQuality
SIO_000300: 1.444e1

GenotypeQuality
all individuals: 3113
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1950
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 7.5e0
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GenotypeQuality
all individuals: 2702
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 77
bin: 4.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2810
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4013
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8405
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47171
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8088
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.31e0

QD
type: SiteQuality
SIO_000300: 1.106e1

FS
type: SiteQuality
SIO_000300: 2.603e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.139999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.705463e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.11e-1

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2818
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4149
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4515
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9195
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.098327632876597e-5
allele num: 47657
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

African
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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DP
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MQ
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SIO_000300: 5.963e1

QD
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ReadPosRankSum
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SIO_000300: 4.72e-1

ClippingRankSum
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SIO_000300: 7.000000000000001e-2

InbreedingCoeff
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SIO_000300: 1.13e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 4.486e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.91e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47879
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 1.084481075805227e-4
allele num: 9221
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

ReadPosRankSum
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SIO_000300: 1.43e0

MQRankSum
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SIO_000300: 4.33e-1

DP
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ClippingRankSum
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SIO_000300: 7.5e-2

MQ
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
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SIO_000300: 2.18e-1

InbreedingCoeff
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SIO_000300: 1.5e-2

QD
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SIO_000300: 1.699e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.086680716983494e-5
allele num: 47923
num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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ReadPosRankSum
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MQ
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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MQRankSum
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085592725452574e-5
allele num: 47948
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.35e1

MQ
type: SiteQuality
SIO_000300: 5.942e1

InbreedingCoeff
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SIO_000300: 5.0e-4

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 1.029e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
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MQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.99e-1

VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.085505735140772e-5
allele num: 47950
num of homozygotes: 0

East Asian
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allele frequency: 1.509889778046203e-4
allele num: 6623
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
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QD
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BaseQRankSum
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MQRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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MQ
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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Other
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African
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.085636223329927e-5
allele num: 47947
num of homozygotes: 0

FS
type: SiteQuality
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DP
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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MQ
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

African
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East Asian
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Latino
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Other
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 47951
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InbreedingCoeff
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VQSLOD
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QD
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ClippingRankSum
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MQ
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FS
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MQRankSum
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DP
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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European (Non-Finnish)
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African
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Latino
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East Asian
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European (Finnish)
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South Asian
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ClippingRankSum
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FS
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BaseQRankSum
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MQ
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QD
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DP
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.510345869204048e-4
allele num: 6621
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47951
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9259
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

FS
type: SiteQuality
SIO_000300: 1.328e0

DP
type: SiteQuality
SIO_000300: 2.768292e6

MQ
type: SiteQuality
SIO_000300: 5.895e1

QD
type: SiteQuality
SIO_000300: 1.743e1

VQSLOD
type: SiteQuality
SIO_000300: -1.779e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.31e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

MQRankSum
type: SiteQuality
SIO_000300: 4.39e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10111
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6621
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9259
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085679723021733e-5
allele num: 47946
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.74e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.14e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.672e0

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.836e0

DP
type: SiteQuality
SIO_000300: 2.767791e6

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.86e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6621
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.086680716983494e-5
allele num: 47923
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 5.2e-2

FS
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SIO_000300: 0.0e0

DP
type: SiteQuality
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MQ
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SIO_000300: 5.886e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10061
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086985558059938e-5
allele num: 47916
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6621
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

FS
type: SiteQuality
SIO_000300: 7.98e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

DP
type: SiteQuality
SIO_000300: 2.765925e6

VQSLOD
type: SiteQuality
SIO_000300: 6.6e-1

QD
type: SiteQuality
SIO_000300: 1.59e1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.510117789187557e-4
allele num: 6622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9253
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.087639088954302e-5
allele num: 47901
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.175778953556731e-4
allele num: 8505
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

VQSLOD
type: SiteQuality
SIO_000300: 5.76e-1

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.212e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.35e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.63e-1

DP
type: SiteQuality
SIO_000300: 2.764803e6

BaseQRankSum
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SIO_000300: 3.9e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele frequency: 1.996406468356957e-4
allele num: 10018
num of homozygotes: 0

FS
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MQ
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
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InbreedingCoeff
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8489
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.091612633340305e-5
allele num: 47810
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9228
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

MQ
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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FS
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DP
type: SiteQuality
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MQRankSum
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
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allele frequency: 1.029548028415526e-4
allele num: 9713
num of homozygotes: 0

East Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
allele num: 6615
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.178689297501179e-4
allele num: 8484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9226
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.621e0

MQRankSum
type: SiteQuality
SIO_000300: -1.912e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.201e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

DP
type: SiteQuality
SIO_000300: 2.748563e6

QD
type: SiteQuality
SIO_000300: 1.395e1

GenotypeQuality
all individuals: 1528
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2807
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1960
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3117
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1883
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28968
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2389
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47729
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.605136436597111e-3
allele num: 623
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-2

DP
type: SiteQuality
SIO_000300: 2.739198e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.405e1

VQSLOD
type: SiteQuality
SIO_000300: 8.37e-1

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2806
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1528
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2389
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4054
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.086248099065827e-4
allele num: 9206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47624
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.742145820983995e-4
allele num: 8435
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6593
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9185
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.19e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.24e-1

DP
type: SiteQuality
SIO_000300: 2.725181e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.451e0

FS
type: SiteQuality
SIO_000300: 3.115e0

QD
type: SiteQuality
SIO_000300: 1.888e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.0e-2

MQ
type: SiteQuality
SIO_000300: 5.986e1

GenotypeQuality
all individuals: 196
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4042
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1527
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variant carriers: 0

GenotypeQuality
all individuals: 3112
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variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2681
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28970
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 11851
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2388
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.40389100153371e-5
allele num: 47597
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9201
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 6.067040800849386e-4
allele num: 6593
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9134
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.08e-2

FS
type: SiteQuality
SIO_000300: 9.44e-1

MQ
type: SiteQuality
SIO_000300: 5.987e1

DP
type: SiteQuality
SIO_000300: 2.723906e6

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-2

QD
type: SiteQuality
SIO_000300: 1.925e1

GenotypeQuality
all individuals: 1946
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4031
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3101
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 29061
bin: 9.75e1
variant carriers: 358

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 122
bin: 3.75e1
variant carriers: 1

Latino
type: Population
allele count: 36
allele frequency: 3.913894324853229e-3
allele num: 9198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 42
allele frequency: 8.824641761566584e-4
allele num: 47594
num of homozygotes: 0

African
type: Population
allele count: 285
allele frequency: 3.38680926916221e-2
allele num: 8415
num of homozygotes: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6593
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 4.422821760283061e-4
allele num: 4522
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 5.48185505975222e-4
allele num: 9121
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.610305958132045e-3
allele num: 621
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.074e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.474e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.913e-1

FS
type: SiteQuality
SIO_000300: 8.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

DP
type: SiteQuality
SIO_000300: 2.748318e6

QD
type: SiteQuality
SIO_000300: 1.848e1

GenotypeQuality
all individuals: 3101
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1946
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11748
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variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 343
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variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
all individuals: 4031
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 29061
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2794
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6593
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9121
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8415
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.202210362650754e-5
allele num: 47594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9198
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.848e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.074e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.474e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
SIO_000300: 4.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.913e-1

FS
type: SiteQuality
SIO_000300: 8.32e-1

DP
type: SiteQuality
SIO_000300: 2.748318e6

GenotypeQuality
all individuals: 1525
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
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variant carriers: 0

GenotypeQuality
all individuals: 259
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variant carriers: 0

GenotypeQuality
all individuals: 1944
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variant carriers: 0

GenotypeQuality
all individuals: 3102
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variant carriers: 0

GenotypeQuality
all individuals: 2954
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28989
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 11297
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variant carriers: 0

GenotypeQuality
all individuals: 2389
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8978
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.191895113230036e-4
allele num: 8390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.179e0

VQSLOD
type: SiteQuality
SIO_000300: -8.789e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.77e-1

DP
type: SiteQuality
SIO_000300: 2.721935e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.38e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.689e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.87e-1

QD
type: SiteQuality
SIO_000300: 2.289e1

GenotypeQuality
all individuals: 1525
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2804
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2389
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3935
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1937
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variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10304
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.10819243580554e-5
allele num: 47434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9176
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8669
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4519
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6575
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.3e-2

MQ
type: SiteQuality
SIO_000300: 5.944e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.06e-1

QD
type: SiteQuality
SIO_000300: 1.606e1

DP
type: SiteQuality
SIO_000300: 2.709587e6

FS
type: SiteQuality
SIO_000300: 8.75e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.53e0

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3092
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10089
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28991
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2390
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2919
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2804
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4519
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9169
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47403
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8331
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.665267086540705e-4
allele num: 8574
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

FS
type: SiteQuality
SIO_000300: 2.953e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 2.42e1

VQSLOD
type: SiteQuality
SIO_000300: -2.258e0

DP
type: SiteQuality
SIO_000300: 2.706211e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.74e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.12e-1

GenotypeQuality
all individuals: 8910
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1925
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2390
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2804
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1525
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3084
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2587
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47321
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9161
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6559
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.203514261644e-4
allele num: 8309
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 7.62e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.587e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-1

MQ
type: SiteQuality
SIO_000300: 5.897e1

MQRankSum
type: SiteQuality
SIO_000300: -4.34e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.124e-1

DP
type: SiteQuality
SIO_000300: 2.700247e6

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2804
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8659
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3084
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3801
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1525
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.203514261644e-4
allele num: 8309
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8273
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47298
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

QD
type: SiteQuality
SIO_000300: 2.906e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.367e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.98e0

MQRankSum
type: SiteQuality
SIO_000300: -1.118e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.697903e6

GenotypeQuality
all individuals: 5294
bin: 6.25e1
variant carriers: 264

GenotypeQuality
all individuals: 374
bin: 1.25e1
variant carriers: 92

GenotypeQuality
all individuals: 926
bin: 8.75e1
variant carriers: 260

GenotypeQuality
all individuals: 437
bin: 1.75e1
variant carriers: 188

GenotypeQuality
all individuals: 2194
bin: 6.75e1
variant carriers: 261

GenotypeQuality
all individuals: 430
bin: 4.75e1
variant carriers: 246

GenotypeQuality
all individuals: 386
bin: 5.25e1
variant carriers: 244

GenotypeQuality
all individuals: 1411
bin: 9.25e1
variant carriers: 436

GenotypeQuality
all individuals: 294
bin: 5.75e1
variant carriers: 144

GenotypeQuality
all individuals: 1645
bin: 8.25e1
variant carriers: 412

GenotypeQuality
all individuals: 704
bin: 3.75e1
variant carriers: 312

GenotypeQuality
all individuals: 38630
bin: 9.75e1
variant carriers: 29933

Other
type: Population
allele count: 274
allele frequency: 4.521452145214521e-1
allele num: 606
num of homozygotes: 34

Latino
type: Population
allele count: 3184
allele frequency: 3.492759982448442e-1
allele num: 9116
num of homozygotes: 429

East Asian
type: Population
allele count: 1085
allele frequency: 1.664621049401657e-1
allele num: 6518
num of homozygotes: 64

African
type: Population
allele count: 5555
allele frequency: 6.696805304400241e-1
allele num: 8295
num of homozygotes: 1462

European (Non-Finnish)
type: Population
allele count: 25396
allele frequency: 5.39846523393491e-1
allele num: 47043
num of homozygotes: 4158

South Asian
type: Population
allele count: 2209
allele frequency: 2.70147976030329e-1
allele num: 8177
num of homozygotes: 129

European (Finnish)
type: Population
allele count: 2606
allele frequency: 5.801424755120214e-1
allele num: 4492
num of homozygotes: 429

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.737e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.2e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.25e-1

DP
type: SiteQuality
SIO_000300: 3.432471e6

MQ
type: SiteQuality
SIO_000300: 5.977e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.38e0

QD
type: SiteQuality
SIO_000300: 2.941e1

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

GenotypeQuality
all individuals: 453
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8636
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2665
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1792
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3036
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2364
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2834
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3744
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28539
bin: 9.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47062
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6529
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.09421162052741e-4
allele num: 9139
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7865
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.339e0

VQSLOD
type: SiteQuality
SIO_000300: -1.502e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

FS
type: SiteQuality
SIO_000300: 1.436e1

MQ
type: SiteQuality
SIO_000300: 5.324e1

QD
type: SiteQuality
SIO_000300: 2.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.849e0

DP
type: SiteQuality
SIO_000300: 2.768656e6

GenotypeQuality
all individuals: 2656
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2998
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 540
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variant carriers: 0

GenotypeQuality
all individuals: 2614
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7635
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1147
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3598
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28539
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.533977603926983e-4
allele num: 6519
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 595
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46971
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8208
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7697
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
type: SiteQuality
SIO_000300: -4.044e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.395e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.92e-1

DP
type: SiteQuality
SIO_000300: 2.756544e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.888e0

QD
type: SiteQuality
SIO_000300: 3.195e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.042e0

GenotypeQuality
all individuals: 797
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1515
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1454
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3366
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2615
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4933
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2939
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6473
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 593
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.138259884106314e-5
allele num: 46767
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4489
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.85e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

DP
type: SiteQuality
SIO_000300: 2.740317e6

MQRankSum
type: SiteQuality
SIO_000300: 4.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.342e1

VQSLOD
type: SiteQuality
SIO_000300: 2.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.335e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

GenotypeQuality
all individuals: 1300
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1300
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variant carriers: 0

GenotypeQuality
all individuals: 10696
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variant carriers: 0

GenotypeQuality
all individuals: 608
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variant carriers: 1

GenotypeQuality
all individuals: 24273
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variant carriers: 0

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
all individuals: 76
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variant carriers: 0

GenotypeQuality
all individuals: 301
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GenotypeQuality
all individuals: 100
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variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 493
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 735
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5679
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 531
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 105
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.67e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.73e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.069e0

DP
type: SiteQuality
SIO_000300: 3.35259e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

GenotypeQuality
all individuals: 2446
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1540
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 549
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1251
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5935
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.402e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.67444e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.14e-2

GenotypeQuality
all individuals: 17008
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1765
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 111
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2225
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1620
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.507e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.05e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e0

MQRankSum
type: SiteQuality
SIO_000300: -1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

QD
type: SiteQuality
SIO_000300: 1.471e1

DP
type: SiteQuality
SIO_000300: 3.73837e5

GenotypeQuality
all individuals: 119
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 9.25e1
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GenotypeQuality
all individuals: 2775
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
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GenotypeQuality
all individuals: 1122
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2051
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 972
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6832
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.13e-2

QD
type: SiteQuality
SIO_000300: 1.321e1

MQ
type: SiteQuality
SIO_000300: 5.177e1

DP
type: SiteQuality
SIO_000300: 4.29094e5

GenotypeQuality
all individuals: 922
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25943
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24093
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2113
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 631
bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6111
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.497971176717504e-5
allele num: 28588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4179
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3231
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6998
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4211
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.10064e5

QD
type: SiteQuality
SIO_000300: 2.789e1

MQ
type: SiteQuality
SIO_000300: 5.845e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.736e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 516
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28660
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2544
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 874
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33329
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5065
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7681
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6799
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.049600327936052e-4
allele num: 4879
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -6.721e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.006736e6

MQ
type: SiteQuality
SIO_000300: 5.635e1

QD
type: SiteQuality
SIO_000300: 3.237e1

GenotypeQuality
all individuals: 669
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1013
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2663
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29618
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 432
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.283202874374438e-4
allele num: 7793
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6944
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5004
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3694
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 1.027388e6

QD
type: SiteQuality
SIO_000300: 3.192e1

GenotypeQuality
all individuals: 819
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19086
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 998
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 651
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2719
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7870
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7021
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34997
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.96232339089482e-4
allele num: 5096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3745
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5452
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e0

VQSLOD
type: SiteQuality
SIO_000300: -2.621e0

MQRankSum
type: SiteQuality
SIO_000300: -1.311e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.67e-1

DP
type: SiteQuality
SIO_000300: 1.043246e6

QD
type: SiteQuality
SIO_000300: 4.97e0

FS
type: SiteQuality
SIO_000300: 1.2856e1

MQ
type: SiteQuality
SIO_000300: 5.913e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e0

GenotypeQuality
all individuals: 421
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 136
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15263
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 306
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
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variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34797
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3074
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.269953360912756e-5
allele num: 37951
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8271
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.36518771331058e-4
allele num: 7325
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3974
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.425e-1

QD
type: SiteQuality
SIO_000300: 1.743e1

MQRankSum
type: SiteQuality
SIO_000300: 6.11e-1

DP
type: SiteQuality
SIO_000300: 1.114601e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.13e-1

FS
type: SiteQuality
SIO_000300: 6.982e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

GenotypeQuality
all individuals: 111
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11360
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 635
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variant carriers: 0

GenotypeQuality
all individuals: 38687
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
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variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
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variant carriers: 0

GenotypeQuality
all individuals: 640
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variant carriers: 1

GenotypeQuality
all individuals: 734
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.458149996312775e-5
allele num: 40681
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7313
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5793
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7619
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4151
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 2.737e0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.3e-1

DP
type: SiteQuality
SIO_000300: 1.188784e6

QD
type: SiteQuality
SIO_000300: 2.102e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.07e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

GenotypeQuality
all individuals: 710
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3605
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10208
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 39620
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 1.75e1
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GenotypeQuality
all individuals: 645
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 469
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.311475409836066e-4
allele num: 7625
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.696928559307653e-3
allele num: 5893
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4195
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41399
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.06e-2

FS
type: SiteQuality
SIO_000300: 1.619e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

VQSLOD
type: SiteQuality
SIO_000300: 5.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.38e-1

QD
type: SiteQuality
SIO_000300: 2.016e1

DP
type: SiteQuality
SIO_000300: 1.210668e6

GenotypeQuality
all individuals: 97
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 52
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GenotypeQuality
all individuals: 756
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 4.25e1
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GenotypeQuality
all individuals: 41103
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 561
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
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GenotypeQuality
all individuals: 697
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8055
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42341
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7801
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.66333998669328e-4
allele num: 6012
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.242374e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.312e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.09e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.97e-1

QD
type: SiteQuality
SIO_000300: 1.483e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

FS
type: SiteQuality
SIO_000300: 5.821e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.102e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

VQSLOD
type: SiteQuality
SIO_000300: 2.49e-1

GenotypeQuality
all individuals: 255
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 3.75e1
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GenotypeQuality
all individuals: 646
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 365
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 44817
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 860
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4275
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4752
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 7.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 595
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8009
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 1.226036558181008e-3
allele num: 8972
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44829
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6257
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.957e1

FS
type: SiteQuality
SIO_000300: 7.66e0

QD
type: SiteQuality
SIO_000300: 1.753e1

VQSLOD
type: SiteQuality
SIO_000300: -1.085e0

DP
type: SiteQuality
SIO_000300: 1.326361e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.58e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.93e-1

GenotypeQuality
all individuals: 464
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 862
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44973
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4632
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 140
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8976
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44917
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4375
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6263
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8021
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.181738845860151e-4
allele num: 9167
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.329724e6

FS
type: SiteQuality
SIO_000300: 9.743e0

QD
type: SiteQuality
SIO_000300: 2.225e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.669e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.24e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 124
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 49
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 245
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48431
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 238
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 926
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 740
bin: 9.75e1
variant carriers: 99

GenotypeQuality
all individuals: 130
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4623
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 384
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2323
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 270
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 189
bin: 5.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 6
allele frequency: 1.349831271091114e-3
allele num: 4445
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9079
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 110
allele frequency: 2.368086801145293e-3
allele num: 46451
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.453385672227674e-4
allele num: 8152
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.123e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

DP
type: SiteQuality
SIO_000300: 1.388205e6

FS
type: SiteQuality
SIO_000300: 5.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.791e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.05e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.117e0

QD
type: SiteQuality
SIO_000300: 1.794e1

GenotypeQuality
all individuals: 4811
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49481
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 216
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9746
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9115
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.128837229105463e-5
allele num: 46974
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6513
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4472
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.412e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.17e-1

DP
type: SiteQuality
SIO_000300: 1.405839e6

MQ
type: SiteQuality
SIO_000300: 5.859e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

QD
type: SiteQuality
SIO_000300: 3.281e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.89e-1

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 252
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9127
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47041
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4481
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.221597849987784e-4
allele num: 8186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.299e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.8e-2

DP
type: SiteQuality
SIO_000300: 1.409009e6

FS
type: SiteQuality
SIO_000300: 1.957e0

MQ
type: SiteQuality
SIO_000300: 5.896e1

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

QD
type: SiteQuality
SIO_000300: 1.321e1

VQSLOD
type: SiteQuality
SIO_000300: 7.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3