19-43680114-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680114
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680114
    reference: chr 19
allele count: 7
allele frequency: 5.77748431825685e-5
allele num: 121160
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.896G>A
  hgvsp: ENSP00000471866.1:p.Ser299Asn
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.617G>A
  hgvsp: ENSP00000385250.1:p.Ser206Asn
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.617G>A
  hgvsp: ENSP00000382334.2:p.Ser206Asn
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5824G>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.617G>A
  hgvsp: ENSP00000386008.1:p.Ser206Asn
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.617G>A
  hgvsp: ENSP00000344413.6:p.Ser206Asn
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.706G>A
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44782
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser206Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS

19-43680118-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680118
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680118
    reference: chr 19
allele count: 1
allele frequency: 8.255865792645674e-6
allele num: 121126
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.613C>T
  hgvsp: ENSP00000385250.1:p.Pro205Ser
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5828C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.613C>T
  hgvsp: ENSP00000344413.6:p.Pro205Ser
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.702C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.613C>T
  hgvsp: ENSP00000382334.2:p.Pro205Ser
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.892C>T
  hgvsp: ENSP00000471866.1:p.Pro298Ser
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.613C>T
  hgvsp: ENSP00000386008.1:p.Pro205Ser
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44783
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro205Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

19-43680121-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680121
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680121
    reference: chr 19
allele count: 1
allele frequency: 8.257365570088519e-6
allele num: 121104
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.610C>T
  hgvsp: ENST00000407356.1:c.610C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.610C>T
  hgvsp: ENST00000366175.3:c.610C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.889C>T
  hgvsp: ENST00000599812.1:c.889C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.699C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.610C>T
  hgvsp: ENST00000404580.1:c.610C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.610C>T
  hgvsp: ENST00000342951.6:c.610C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5831C>T
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44783
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2472
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu204Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-43680124-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680124
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680124
    reference: chr 19
allele count: 1
allele frequency: 8.260776182530111e-6
allele num: 121054
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.696A>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.607A>T
  hgvsp: ENSP00000386008.1:p.Ile203Phe
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.607A>T
  hgvsp: ENSP00000344413.6:p.Ile203Phe
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.607A>T
  hgvsp: ENSP00000385250.1:p.Ile203Phe
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.607A>T
  hgvsp: ENSP00000382334.2:p.Ile203Phe
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.886A>T
  hgvsp: ENSP00000471866.1:p.Ile296Phe
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5834A>T
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44783
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55894
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile203Phe
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

19-43680128-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680128
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680128
    reference: chr 19
allele count: 1
allele frequency: 8.261731658955718e-6
allele num: 121040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5838C>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.603C>A
  hgvsp: ENST00000404580.1:c.603C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.603C>A
  hgvsp: ENST00000407356.1:c.603C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.603C>A
  hgvsp: ENST00000342951.6:c.603C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.882C>A
  hgvsp: ENST00000599812.1:c.882C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.692C>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.603C>A
  hgvsp: ENST00000366175.3:c.603C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 44783
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2420
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile201Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

19-43680141-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680141
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680141
    reference: chr 19
allele count: 5
allele frequency: 4.132299707433181e-5
allele num: 120998
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.869T>C
  hgvsp: ENSP00000471866.1:p.Ile290Thr
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5851T>C
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.590T>C
  hgvsp: ENSP00000344413.6:p.Ile197Thr
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.590T>C
  hgvsp: ENSP00000386008.1:p.Ile197Thr
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.590T>C
  hgvsp: ENSP00000385250.1:p.Ile197Thr
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.679T>C
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.590T>C
  hgvsp: ENSP00000382334.2:p.Ile197Thr
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44783
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55893
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2356
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile197Thr
num of homozygotes: 1
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-43680144-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680144
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680144
    reference: chr 19
allele count: 14
allele frequency: 1.157177808635853e-4
allele num: 120984
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.587C>T
  hgvsp: ENSP00000382334.2:p.Pro196Leu
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.587C>T
  hgvsp: ENSP00000386008.1:p.Pro196Leu
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5854C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.866C>T
  hgvsp: ENSP00000471866.1:p.Pro289Leu
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.587C>T
  hgvsp: ENSP00000344413.6:p.Pro196Leu
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.676C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.587C>T
  hgvsp: ENSP00000385250.1:p.Pro196Leu
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44783
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro196Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

19-43680147-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680147
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680147
    reference: chr 19
allele count: 1
allele frequency: 8.267059076404159e-6
allele num: 120962
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.584G>C
  hgvsp: ENSP00000386008.1:p.Arg195Pro
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.584G>C
  hgvsp: ENSP00000382334.2:p.Arg195Pro
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.863G>C
  hgvsp: ENSP00000471866.1:p.Arg288Pro
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.584G>C
  hgvsp: ENSP00000344413.6:p.Arg195Pro
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.673G>C
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5857G>C
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.584G>C
  hgvsp: ENSP00000385250.1:p.Arg195Pro
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45749
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg195Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

19-43680147-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680147
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680147
    reference: chr 19
allele count: 29156
allele frequency: 2.410343744316397e-1
allele num: 120962
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.584G>A
  hgvsp: ENSP00000385250.1:p.Arg195Gln
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.673G>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.584G>A
  hgvsp: ENSP00000344413.6:p.Arg195Gln
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.863G>A
  hgvsp: ENSP00000471866.1:p.Arg288Gln
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.584G>A
  hgvsp: ENSP00000382334.2:p.Arg195Gln
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.584G>A
  hgvsp: ENSP00000386008.1:p.Arg195Gln
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5857G>A
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 3.75e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.25e1
  variant carriers: 148
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 9.25e1
  variant carriers: 391
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.25e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 7.75e1
  variant carriers: 325
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 5.75e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.75e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 2.75e1
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 8.75e1
  variant carriers: 359
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 7.25e1
  variant carriers: 295
genotype depth: GenotypeDepth
  all individuals: 45749
  bin: 9.75e1
  variant carriers: 21036
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 3.25e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 179
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 8.25e1
  variant carriers: 360
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 2.25e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 6.75e1
  variant carriers: 237
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 129
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 9.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 3
hgvs: p.Arg195Gln
num of homozygotes: 4693
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD

19-43680162-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680162
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680162
    reference: chr 19
allele count: 1
allele frequency: 8.267332462507647e-6
allele num: 120958
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.569G>C
  hgvsp: ENSP00000386008.1:p.Ser190Thr
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.569G>C
  hgvsp: ENSP00000344413.6:p.Ser190Thr
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.569G>C
  hgvsp: ENSP00000382334.2:p.Ser190Thr
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.569G>C
  hgvsp: ENSP00000385250.1:p.Ser190Thr
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.848G>C
  hgvsp: ENSP00000471866.1:p.Ser283Thr
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.658G>C
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5872G>C
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42595
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser190Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/19-43680166-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680166
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680166
    reference: chr 19
allele count: 1
allele frequency: 8.268289456277286e-6
allele num: 120944
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5876G>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.844G>T
  hgvsp: ENSP00000471866.1:p.Val282Phe
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.565G>T
  hgvsp: ENSP00000344413.6:p.Val189Phe
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.654G>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.565G>T
  hgvsp: ENSP00000382334.2:p.Val189Phe
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.565G>T
  hgvsp: ENSP00000386008.1:p.Val189Phe
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.565G>T
  hgvsp: ENSP00000385250.1:p.Val189Phe
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42596
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val189Phe
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/19-43680167-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680167
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680167
    reference: chr 19
allele count: 387
allele frequency: 3.199775106245762e-3
allele num: 120946
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.653G>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.843G>T
  hgvsp: ENST00000599812.1:c.843G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.564G>T
  hgvsp: ENST00000342951.6:c.564G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.564G>T
  hgvsp: ENST00000404580.1:c.564G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5877G>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.564G>T
  hgvsp: ENST00000407356.1:c.564G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.564G>T
  hgvsp: ENST00000366175.3:c.564G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 42614
  bin: 9.75e1
  variant carriers: 302
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4375
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.75e1
  variant carriers: 2
hgvs: p.Pro188Pro
num of homozygotes: 10
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-43680167-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680167
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680167
    reference: chr 19
allele count: 186
allele frequency: 1.537876407653002e-3
allele num: 120946
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.653G>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.564G>A
  hgvsp: ENST00000407356.1:c.564G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5877G>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.564G>A
  hgvsp: ENST00000404580.1:c.564G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.564G>A
  hgvsp: ENST00000366175.3:c.564G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.564G>A
  hgvsp: ENST00000342951.6:c.564G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.843G>A
  hgvsp: ENST00000599812.1:c.843G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42614
  bin: 9.75e1
  variant carriers: 143
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.25e1
  variant carriers: 1
hgvs: p.Pro188Pro
num of homozygotes: 5
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum

19-43680168-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680168
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680168
    reference: chr 19
allele count: 7
allele frequency: 5.787611204815293e-5
allele num: 120948
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.563C>T
  hgvsp: ENSP00000386008.1:p.Pro188Leu
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.842C>T
  hgvsp: ENSP00000471866.1:p.Pro281Leu
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.563C>T
  hgvsp: ENSP00000344413.6:p.Pro188Leu
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.563C>T
  hgvsp: ENSP00000385250.1:p.Pro188Leu
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.652C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.563C>T
  hgvsp: ENSP00000382334.2:p.Pro188Leu
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5878C>T
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42576
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro188Leu
num of homozygotes: 1
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

19-43680169-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680169
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680169
    reference: chr 19
allele count: 1
allele frequency: 8.266785708380868e-6
allele num: 120966
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.562C>T
  hgvsp: ENSP00000385250.1:p.Pro188Ser
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.841C>T
  hgvsp: ENSP00000471866.1:p.Pro281Ser
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.651C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.562C>T
  hgvsp: ENSP00000386008.1:p.Pro188Ser
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5879C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.562C>T
  hgvsp: ENSP00000344413.6:p.Pro188Ser
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.562C>T
  hgvsp: ENSP00000382334.2:p.Pro188Ser
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42573
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4470
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53424
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro188Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD

19-43680169-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680169
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680169
    reference: chr 19
allele count: 1
allele frequency: 8.266785708380868e-6
allele num: 120966
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.841C>G
  hgvsp: ENSP00000471866.1:p.Pro281Ala
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.562C>G
  hgvsp: ENSP00000385250.1:p.Pro188Ala
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.562C>G
  hgvsp: ENSP00000382334.2:p.Pro188Ala
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.562C>G
  hgvsp: ENSP00000344413.6:p.Pro188Ala
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5879C>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.562C>G
  hgvsp: ENSP00000386008.1:p.Pro188Ala
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.651C>G
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42573
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro188Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

19-43680170-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680170
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680170
    reference: chr 19
allele count: 1
allele frequency: 8.266649031148734e-6
allele num: 120968
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.561C>A
  hgvsp: ENST00000404580.1:c.561C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.561C>A
  hgvsp: ENST00000407356.1:c.561C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.650C>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.561C>A
  hgvsp: ENST00000342951.6:c.561C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.561C>A
  hgvsp: ENST00000366175.3:c.561C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5880C>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.840C>A
  hgvsp: ENST00000599812.1:c.840C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42573
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4508
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu187Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/19-43680174-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680174
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680174
    reference: chr 19
allele count: 4
allele frequency: 3.306331625061994e-5
allele num: 120980
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5884G>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.557G>T
  hgvsp: ENSP00000385250.1:p.Ser186Ile
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.557G>T
  hgvsp: ENSP00000382334.2:p.Ser186Ile
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.646G>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.557G>T
  hgvsp: ENSP00000386008.1:p.Ser186Ile
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.557G>T
  hgvsp: ENSP00000344413.6:p.Ser186Ile
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.836G>T
  hgvsp: ENSP00000471866.1:p.Ser279Ile
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42573
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4549
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser186Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-43680181-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680181
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680181
    reference: chr 19
allele count: 4
allele frequency: 3.306058351929912e-5
allele num: 120990
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.550G>T
  hgvsp: ENSP00000386008.1:p.Gly184Cys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.550G>T
  hgvsp: ENSP00000385250.1:p.Gly184Cys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.829G>T
  hgvsp: ENSP00000471866.1:p.Gly277Cys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.550G>T
  hgvsp: ENSP00000344413.6:p.Gly184Cys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.550G>T
  hgvsp: ENSP00000382334.2:p.Gly184Cys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5891G>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.639G>T
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42575
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly184Cys
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

19-43680181-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680181
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680181
    reference: chr 19
allele count: 1
allele frequency: 8.265145879824779e-6
allele num: 120990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.829G>A
  hgvsp: ENSP00000471866.1:p.Gly277Ser
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.550G>A
  hgvsp: ENSP00000386008.1:p.Gly184Ser
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.550G>A
  hgvsp: ENSP00000344413.6:p.Gly184Ser
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.550G>A
  hgvsp: ENSP00000382334.2:p.Gly184Ser
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.639G>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5891G>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.550G>A
  hgvsp: ENSP00000385250.1:p.Gly184Ser
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42575
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly184Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum

19-43680182-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680182
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680182
    reference: chr 19
allele count: 4
allele frequency: 3.305511941161887e-5
allele num: 121010
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.549T>C
  hgvsp: ENST00000404580.1:c.549T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.828T>C
  hgvsp: ENST00000599812.1:c.828T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.549T>C
  hgvsp: ENST00000342951.6:c.549T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.549T>C
  hgvsp: ENST00000407356.1:c.549T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.638T>C
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.549T>C
  hgvsp: ENST00000366175.3:c.549T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5892T>C
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42576
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4656
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn183Asn
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP

19-43680183-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680183
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680183
    reference: chr 19
allele count: 2
allele frequency: 1.652728655009421e-5
allele num: 121012
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.548A>G
  hgvsp: ENSP00000344413.6:p.Asn183Ser
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5893A>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.827A>G
  hgvsp: ENSP00000471866.1:p.Asn276Ser
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.548A>G
  hgvsp: ENSP00000386008.1:p.Asn183Ser
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.637A>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.548A>G
  hgvsp: ENSP00000385250.1:p.Asn183Ser
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.548A>G
  hgvsp: ENSP00000382334.2:p.Asn183Ser
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42574
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53428
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn183Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/19-43680191-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680191
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680191
    reference: chr 19
allele count: 1
allele frequency: 8.26296045347127e-6
allele num: 121022
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.819G>T
  hgvsp: ENSP00000471866.1:p.Trp273Cys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5901G>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.540G>T
  hgvsp: ENSP00000385250.1:p.Trp180Cys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.540G>T
  hgvsp: ENSP00000344413.6:p.Trp180Cys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.629G>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.540G>T
  hgvsp: ENSP00000382334.2:p.Trp180Cys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.540G>T
  hgvsp: ENSP00000386008.1:p.Trp180Cys
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42574
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4659
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Trp180Cys
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

19-43680195-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680195
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680195
    reference: chr 19
allele count: 2
allele frequency: 1.652428243303535e-5
allele num: 121034
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.815T>C
  hgvsp: ENSP00000471866.1:p.Ile272Thr
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.536T>C
  hgvsp: ENSP00000386008.1:p.Ile179Thr
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5905T>C
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.536T>C
  hgvsp: ENSP00000385250.1:p.Ile179Thr
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.536T>C
  hgvsp: ENSP00000382334.2:p.Ile179Thr
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.625T>C
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.536T>C
  hgvsp: ENSP00000344413.6:p.Ile179Thr
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42574
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile179Thr
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

19-43680197-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680197
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680197
    reference: chr 19
allele count: 3
allele frequency: 2.478396642598681e-5
allele num: 121046
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.623C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5907C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.534C>T
  hgvsp: ENST00000342951.6:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.534C>T
  hgvsp: ENST00000366175.3:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.534C>T
  hgvsp: ENST00000407356.1:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.534C>T
  hgvsp: ENST00000404580.1:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.813C>T
  hgvsp: ENST00000599812.1:c.813C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42576
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4714
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr178Tyr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS

19-43680197-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680197
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680197
    reference: chr 19
allele count: 1
allele frequency: 8.261322141995606e-6
allele num: 121046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.623C>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.534C>A
  hgvsp: ENSP00000385250.1:p.Tyr178Ter
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.534C>A
  hgvsp: ENSP00000344413.6:p.Tyr178Ter
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.534C>A
  hgvsp: ENSP00000382334.2:p.Tyr178Ter
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.534C>A
  hgvsp: ENSP00000386008.1:p.Tyr178Ter
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5907C>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.813C>A
  hgvsp: ENSP00000471866.1:p.Tyr271Ter
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42576
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Tyr178Ter
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

19-43680202-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680202
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680202
    reference: chr 19
allele count: 1
allele frequency: 8.259684480052863e-6
allele num: 121070
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.808A>G
  hgvsp: ENSP00000471866.1:p.Thr270Ala
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.618A>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.529A>G
  hgvsp: ENSP00000344413.6:p.Thr177Ala
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.529A>G
  hgvsp: ENSP00000386008.1:p.Thr177Ala
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.529A>G
  hgvsp: ENSP00000385250.1:p.Thr177Ala
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5912A>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.529A>G
  hgvsp: ENSP00000382334.2:p.Thr177Ala
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42573
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4741
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr177Ala
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

19-43680206-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680206
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680206
    reference: chr 19
allele count: 1
allele frequency: 8.258593066085262e-6
allele num: 121086
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.804C>G
  hgvsp: ENSP00000471866.1:p.Asn268Lys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.525C>G
  hgvsp: ENSP00000386008.1:p.Asn175Lys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5916C>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.525C>G
  hgvsp: ENSP00000382334.2:p.Asn175Lys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.525C>G
  hgvsp: ENSP00000344413.6:p.Asn175Lys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.525C>G
  hgvsp: ENSP00000385250.1:p.Asn175Lys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.614C>G
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42572
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53430
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asn175Lys
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

19-43680209-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680209
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680209
    reference: chr 19
allele count: 2
allele frequency: 1.651664051531918e-5
allele num: 121090
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.611G>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.522G>A
  hgvsp: ENST00000342951.6:c.522G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.522G>A
  hgvsp: ENST00000366175.3:c.522G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.801G>A
  hgvsp: ENST00000599812.1:c.801G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5919G>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.522G>A
  hgvsp: ENST00000404580.1:c.522G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.522G>A
  hgvsp: ENST00000407356.1:c.522G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42572
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4691
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu174Glu
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/19-43680212-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680212
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680211
    reference: chr 19
allele count: 1
allele frequency: 8.256820133430213e-6
allele num: 121112
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.607delG
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.518delG
  hgvsp: ENSP00000386008.1:p.Ser173MetfsTer10
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5923delG
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.797delG
  hgvsp: ENSP00000471866.1:p.Ser266MetfsTer10
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.518delG
  hgvsp: ENSP00000385250.1:p.Ser173MetfsTer10
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.518delG
  hgvsp: ENSP00000382334.2:p.Ser173MetfsTer10
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.518delG
  hgvsp: ENSP00000344413.6:p.Ser173MetfsTer10
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42572
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser173MetfsTer10
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: AC
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP

19-43680215-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680215
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680215
    reference: chr 19
allele count: 5
allele frequency: 4.128410066715107e-5
allele num: 121112
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.516G>A
  hgvsp: ENST00000366175.3:c.516G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5925G>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.605G>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.516G>A
  hgvsp: ENST00000342951.6:c.516G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.516G>A
  hgvsp: ENST00000407356.1:c.516G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.516G>A
  hgvsp: ENST00000404580.1:c.516G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.795G>A
  hgvsp: ENST00000599812.1:c.795G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42571
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53421
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys172Lys
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

19-43680215-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680215
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680213
    reference: chr 19
allele count: 1
allele frequency: 8.256820133430213e-6
allele num: 121112
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5927_431-5926delAA
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.793_794delAA
  hgvsp: ENSP00000471866.1:p.Lys265GlufsTer2
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.603_604delAA
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.514_515delAA
  hgvsp: ENSP00000385250.1:p.Lys172GlufsTer2
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.514_515delAA
  hgvsp: ENSP00000382334.2:p.Lys172GlufsTer2
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.514_515delAA
  hgvsp: ENSP00000344413.6:p.Lys172GlufsTer2
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.514_515delAA
  hgvsp: ENSP00000386008.1:p.Lys172GlufsTer2
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42571
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys172GlufsTer2
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: CTT
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

19-43680221-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680221
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680221
    reference: chr 19
allele count: 3
allele frequency: 2.475492623031983e-5
allele num: 121188
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.510A>C
  hgvsp: ENSP00000382334.2:p.Glu170Asp
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.599A>C
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.510A>C
  hgvsp: ENSP00000385250.1:p.Glu170Asp
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.789A>C
  hgvsp: ENSP00000471866.1:p.Glu263Asp
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.510A>C
  hgvsp: ENSP00000344413.6:p.Glu170Asp
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5931A>C
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.510A>C
  hgvsp: ENSP00000386008.1:p.Glu170Asp
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42570
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 6.75e1
  variant carriers: 1
hgvs: p.Glu170Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

19-43680228-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680228
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680228
    reference: chr 19
allele count: 246
allele frequency: 2.028464468888633e-3
allele num: 121274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5938C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.592C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.503C>T
  hgvsp: ENSP00000385250.1:p.Thr168Ile
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.503C>T
  hgvsp: ENSP00000344413.6:p.Thr168Ile
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.782C>T
  hgvsp: ENSP00000471866.1:p.Thr261Ile
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.503C>T
  hgvsp: ENSP00000386008.1:p.Thr168Ile
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.503C>T
  hgvsp: ENSP00000382334.2:p.Thr168Ile
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 42613
  bin: 9.75e1
  variant carriers: 200
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr168Ile
num of homozygotes: 14
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

19-43680234-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680234
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680234
    reference: chr 19
allele count: 3
allele frequency: 2.473247704001715e-5
allele num: 121298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.497C>T
  hgvsp: ENSP00000344413.6:p.Ala166Val
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5944C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.497C>T
  hgvsp: ENSP00000385250.1:p.Ala166Val
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.776C>T
  hgvsp: ENSP00000471866.1:p.Ala259Val
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.497C>T
  hgvsp: ENSP00000382334.2:p.Ala166Val
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.497C>T
  hgvsp: ENSP00000386008.1:p.Ala166Val
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.586C>T
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42558
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5036
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala166Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

19-43680235-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680235
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680235
    reference: chr 19
allele count: 2
allele frequency: 1.648940555692967e-5
allele num: 121290
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.775G>C
  hgvsp: ENSP00000471866.1:p.Ala259Pro
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.496G>C
  hgvsp: ENSP00000344413.6:p.Ala166Pro
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.496G>C
  hgvsp: ENSP00000386008.1:p.Ala166Pro
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.496G>C
  hgvsp: ENSP00000382334.2:p.Ala166Pro
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5945G>C
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.496G>C
  hgvsp: ENSP00000385250.1:p.Ala166Pro
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.585G>C
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42560
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala166Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

19-43680235-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680235
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680235
    reference: chr 19
allele count: 26
allele frequency: 2.143622722400857e-4
allele num: 121290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.775G>A
  hgvsp: ENSP00000471866.1:p.Ala259Thr
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.496G>A
  hgvsp: ENSP00000344413.6:p.Ala166Thr
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.496G>A
  hgvsp: ENSP00000382334.2:p.Ala166Thr
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.496G>A
  hgvsp: ENSP00000385250.1:p.Ala166Thr
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.496G>A
  hgvsp: ENSP00000386008.1:p.Ala166Thr
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5945G>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.585G>A
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42560
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala166Thr
num of homozygotes: 1
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/19-43680238-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680238
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680238
    reference: chr 19
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5948T>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.493T>G
  hgvsp: ENSP00000344413.6:p.Leu165Val
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.493T>G
  hgvsp: ENSP00000386008.1:p.Leu165Val
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.582T>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.493T>G
  hgvsp: ENSP00000385250.1:p.Leu165Val
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.493T>G
  hgvsp: ENSP00000382334.2:p.Leu165Val
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.772T>G
  hgvsp: ENSP00000471866.1:p.Leu258Val
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42551
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu165Val
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-43680239-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680239
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680239
    reference: chr 19
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.581C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.492C>T
  hgvsp: ENST00000366175.3:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5949C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.492C>T
  hgvsp: ENST00000407356.1:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.492C>T
  hgvsp: ENST00000342951.6:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.492C>T
  hgvsp: ENST00000404580.1:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.771C>T
  hgvsp: ENST00000599812.1:c.771C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42665
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val164Val
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

19-43680239-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680239
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680239
    reference: chr 19
allele count: 5
allele frequency: 4.121807659967356e-5
allele num: 121306
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.492C>G
  hgvsp: ENST00000404580.1:c.492C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.492C>G
  hgvsp: ENST00000407356.1:c.492C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.771C>G
  hgvsp: ENST00000599812.1:c.771C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.492C>G
  hgvsp: ENST00000366175.3:c.492C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.492C>G
  hgvsp: ENST00000342951.6:c.492C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5949C>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.581C>G
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42665
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5030
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val164Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD

19-43680239-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680239
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680239
    reference: chr 19
allele count: 378
allele frequency: 3.116086590935321e-3
allele num: 121306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5949C>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.581C>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.771C>A
  hgvsp: ENST00000599812.1:c.771C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.492C>A
  hgvsp: ENST00000407356.1:c.492C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.492C>A
  hgvsp: ENST00000366175.3:c.492C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.492C>A
  hgvsp: ENST00000404580.1:c.492C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.492C>A
  hgvsp: ENST00000342951.6:c.492C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42665
  bin: 9.75e1
  variant carriers: 345
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val164Val
num of homozygotes: 7
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS

19-43680244-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680244
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680244
    reference: chr 19
allele count: 242
allele frequency: 1.994889127029923e-3
allele num: 121310
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.576G>C
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.487G>C
  hgvsp: ENSP00000344413.6:p.Asp163His
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.487G>C
  hgvsp: ENSP00000386008.1:p.Asp163His
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.487G>C
  hgvsp: ENSP00000382334.2:p.Asp163His
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.766G>C
  hgvsp: ENSP00000471866.1:p.Asp256His
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.487G>C
  hgvsp: ENSP00000385250.1:p.Asp163His
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5954G>C
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42568
  bin: 9.75e1
  variant carriers: 237
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5062
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp163His
num of homozygotes: 4
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

19-43680244-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680244
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680244
    reference: chr 19
allele count: 2
allele frequency: 1.64866870002473e-5
allele num: 121310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5954G>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.487G>A
  hgvsp: ENSP00000344413.6:p.Asp163Asn
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.487G>A
  hgvsp: ENSP00000386008.1:p.Asp163Asn
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.487G>A
  hgvsp: ENSP00000382334.2:p.Asp163Asn
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.487G>A
  hgvsp: ENSP00000385250.1:p.Asp163Asn
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.766G>A
  hgvsp: ENSP00000471866.1:p.Asp256Asn
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.576G>A
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42568
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp163Asn
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

19-43680248-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680248
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680248
    reference: chr 19
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.483T>A
  hgvsp: ENSP00000344413.6:p.Asn161Lys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5958T>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.483T>A
  hgvsp: ENSP00000385250.1:p.Asn161Lys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.572T>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.762T>A
  hgvsp: ENSP00000471866.1:p.Asn254Lys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.483T>A
  hgvsp: ENSP00000386008.1:p.Asn161Lys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.483T>A
  hgvsp: ENSP00000382334.2:p.Asn161Lys
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42533
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5066
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn161Lys
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

19-43680251-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680251
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680251
    reference: chr 19
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.759G>A
  hgvsp: ENST00000599812.1:c.759G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5961G>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.480G>A
  hgvsp: ENST00000342951.6:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.480G>A
  hgvsp: ENST00000407356.1:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.480G>A
  hgvsp: ENST00000366175.3:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.480G>A
  hgvsp: ENST00000404580.1:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.569G>A
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42533
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53427
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu160Glu
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

19-43680254-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680254
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680254
    reference: chr 19
allele count: 2
allele frequency: 1.648723063986942e-5
allele num: 121306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.477G>A
  hgvsp: ENST00000404580.1:c.477G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.566G>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.477G>A
  hgvsp: ENST00000407356.1:c.477G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5964G>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.477G>A
  hgvsp: ENST00000366175.3:c.477G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.477G>A
  hgvsp: ENST00000342951.6:c.477G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.756G>A
  hgvsp: ENST00000599812.1:c.756G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42533
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5065
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg159Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

19-43680255-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680255
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680255
    reference: chr 19
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.476G>A
  hgvsp: ENSP00000344413.6:p.Arg159Lys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5965G>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.476G>A
  hgvsp: ENSP00000382334.2:p.Arg159Lys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.476G>A
  hgvsp: ENSP00000386008.1:p.Arg159Lys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.476G>A
  hgvsp: ENSP00000385250.1:p.Arg159Lys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.755G>A
  hgvsp: ENSP00000471866.1:p.Arg252Lys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.565G>A
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42534
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5066
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg159Lys
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

19-43680260-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680260
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680260
    reference: chr 19
allele count: 1
allele frequency: 8.244566830458728e-6
allele num: 121292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.471A>C
  hgvsp: ENSP00000344413.6:p.Lys157Asn
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.560A>C
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.471A>C
  hgvsp: ENSP00000382334.2:p.Lys157Asn
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.750A>C
  hgvsp: ENSP00000471866.1:p.Lys250Asn
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.471A>C
  hgvsp: ENSP00000386008.1:p.Lys157Asn
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5970A>C
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.471A>C
  hgvsp: ENSP00000385250.1:p.Lys157Asn
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42534
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53428
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5034
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys157Asn
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

19-43680264-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680264
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680264
    reference: chr 19
allele count: 1
allele frequency: 8.244838730954422e-6
allele num: 121288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.467C>T
  hgvsp: ENSP00000386008.1:p.Ser156Leu
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.746C>T
  hgvsp: ENSP00000471866.1:p.Ser249Leu
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.467C>T
  hgvsp: ENSP00000382334.2:p.Ser156Leu
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.467C>T
  hgvsp: ENSP00000344413.6:p.Ser156Leu
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.467C>T
  hgvsp: ENSP00000385250.1:p.Ser156Leu
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5974C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.556C>T
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42534
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5051
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser156Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

19-43680266-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680266
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680266
    reference: chr 19
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.465C>G
  hgvsp: ENSP00000344413.6:p.Asn155Lys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.554C>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.465C>G
  hgvsp: ENSP00000386008.1:p.Asn155Lys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.744C>G
  hgvsp: ENSP00000471866.1:p.Asn248Lys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5976C>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.465C>G
  hgvsp: ENSP00000385250.1:p.Asn155Lys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.465C>G
  hgvsp: ENSP00000382334.2:p.Asn155Lys
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42534
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5013
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn155Lys
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

19-43680269-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680269
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680269
    reference: chr 19
allele count: 23303
allele frequency: 1.921358134626167e-1
allele num: 121284
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.462C>G
  hgvsp: ENSP00000382334.2:p.Asn154Lys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.551C>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.462C>G
  hgvsp: ENSP00000344413.6:p.Asn154Lys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.462C>G
  hgvsp: ENSP00000386008.1:p.Asn154Lys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5979C>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.741C>G
  hgvsp: ENSP00000471866.1:p.Asn247Lys
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.462C>G
  hgvsp: ENSP00000385250.1:p.Asn154Lys
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 3.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.75e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 43807
  bin: 9.75e1
  variant carriers: 18613
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 2.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 7.25e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 9.25e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.25e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 5.75e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 8.25e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 6.75e1
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 3.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 7.75e1
  variant carriers: 178
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.25e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 8.75e1
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.25e1
  variant carriers: 125
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 8.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 6.75e1
  variant carriers: 3
hgvs: p.Asn154Lys
num of homozygotes: 3018
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

19-43680271-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680271
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680271
    reference: chr 19
allele count: 1
allele frequency: 8.247422680412371e-6
allele num: 121250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.460A>G
  hgvsp: ENSP00000344413.6:p.Asn154Asp
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.549A>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5981A>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.739A>G
  hgvsp: ENSP00000471866.1:p.Asn247Asp
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.460A>G
  hgvsp: ENSP00000382334.2:p.Asn154Asp
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.460A>G
  hgvsp: ENSP00000385250.1:p.Asn154Asp
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.460A>G
  hgvsp: ENSP00000386008.1:p.Asn154Asp
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39578
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn154Asp
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

19-43680275-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680275
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680275
    reference: chr 19
allele count: 1
allele frequency: 8.249872126982032e-6
allele num: 121214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.545C>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.456C>A
  hgvsp: ENST00000404580.1:c.456C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.456C>A
  hgvsp: ENST00000407356.1:c.456C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.735C>A
  hgvsp: ENST00000599812.1:c.735C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5985C>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.456C>A
  hgvsp: ENST00000342951.6:c.456C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.456C>A
  hgvsp: ENST00000366175.3:c.456C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39578
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5896
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr152Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: G
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-43680281-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680281
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680281
    reference: chr 19
allele count: 1
allele frequency: 8.251369727374745e-6
allele num: 121192
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.729C>A
  hgvsp: ENSP00000471866.1:p.Tyr243Ter
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.450C>A
  hgvsp: ENSP00000344413.6:p.Tyr150Ter
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.539C>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.450C>A
  hgvsp: ENSP00000386008.1:p.Tyr150Ter
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.450C>A
  hgvsp: ENSP00000382334.2:p.Tyr150Ter
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.450C>A
  hgvsp: ENSP00000385250.1:p.Tyr150Ter
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5991C>A
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39578
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5890
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Tyr150Ter
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD

19-43680285-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680285
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680285
    reference: chr 19
allele count: 4
allele frequency: 3.301038176506511e-5
allele num: 121174
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.446C>G
  hgvsp: ENSP00000344413.6:p.Pro149Arg
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.446C>G
  hgvsp: ENSP00000382334.2:p.Pro149Arg
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.725C>G
  hgvsp: ENSP00000471866.1:p.Pro242Arg
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-5995C>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.446C>G
  hgvsp: ENSP00000385250.1:p.Pro149Arg
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.535C>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.446C>G
  hgvsp: ENSP00000386008.1:p.Pro149Arg
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39579
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52199
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro149Arg
num of homozygotes: 1
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD

19-43680290-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680290
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680290
    reference: chr 19
allele count: 1
allele frequency: 8.253957772752034e-6
allele num: 121154
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.441C>T
  hgvsp: ENST00000407356.1:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.720C>T
  hgvsp: ENST00000599812.1:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.441C>T
  hgvsp: ENST00000366175.3:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.441C>T
  hgvsp: ENST00000342951.6:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-6000C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.530C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.441C>T
  hgvsp: ENST00000404580.1:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39578
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52198
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro147Pro
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

19-43680290-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680290
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680290
    reference: chr 19
allele count: 1
allele frequency: 8.253957772752034e-6
allele num: 121154
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.441C>G
  hgvsp: ENST00000404580.1:c.441C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.441C>G
  hgvsp: ENST00000342951.6:c.441C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.530C>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.441C>G
  hgvsp: ENST00000366175.3:c.441C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-6000C>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.720C>G
  hgvsp: ENST00000599812.1:c.720C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.441C>G
  hgvsp: ENST00000407356.1:c.441C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39578
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52198
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro147Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

19-43680292-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680292
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680292
    reference: chr 19
allele count: 1
allele frequency: 8.255320554097116e-6
allele num: 121134
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.439C>T
  hgvsp: ENSP00000382334.2:p.Pro147Ser
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.528C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.718C>T
  hgvsp: ENSP00000471866.1:p.Pro240Ser
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-6002C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.439C>T
  hgvsp: ENSP00000385250.1:p.Pro147Ser
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.439C>T
  hgvsp: ENSP00000386008.1:p.Pro147Ser
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.439C>T
  hgvsp: ENSP00000344413.6:p.Pro147Ser
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39578
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro147Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-43680293-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680293
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680293
    reference: chr 19
allele count: 1
allele frequency: 8.256274768824306e-6
allele num: 121120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.717G>T
  hgvsp: ENST00000599812.1:c.717G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.438G>T
  hgvsp: ENST00000407356.1:c.438G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-6003G>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.527G>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.438G>T
  hgvsp: ENST00000366175.3:c.438G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.438G>T
  hgvsp: ENST00000342951.6:c.438G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.438G>T
  hgvsp: ENST00000404580.1:c.438G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39578
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52196
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu146Leu
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

19-43680296-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680296
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680296
    reference: chr 19
allele count: 1
allele frequency: 8.258047467256841e-6
allele num: 121094
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-6006G>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.435G>A
  hgvsp: ENST00000342951.6:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.714G>A
  hgvsp: ENST00000599812.1:c.714G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.435G>A
  hgvsp: ENST00000407356.1:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.524G>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.435G>A
  hgvsp: ENST00000404580.1:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.435G>A
  hgvsp: ENST00000366175.3:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39579
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys145Lys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ

19-43680299-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680299
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680299
    reference: chr 19
allele count: 1
allele frequency: 8.262004692818665e-6
allele num: 121036
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.432G>A
  hgvsp: ENST00000366175.3:c.432G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.711G>A
  hgvsp: ENST00000599812.1:c.711G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.432G>A
  hgvsp: ENST00000407356.1:c.432G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.521G>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.432G>A
  hgvsp: ENST00000404580.1:c.432G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.432G>A
  hgvsp: ENST00000342951.6:c.432G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-6009G>A
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39579
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5611
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52194
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: c.432G>A
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/19-43680300-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680300
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680300
    reference: chr 19
allele count: 1
allele frequency: 8.263916435277007e-6
allele num: 121008
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.520T>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.431T>G
  hgvsp: ENSP00000386008.1:p.Leu144Arg
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-6010T>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.431T>G
  hgvsp: ENSP00000385250.1:p.Leu144Arg
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.431T>G
  hgvsp: ENSP00000344413.6:p.Leu144Arg
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.431T>G
  hgvsp: ENSP00000382334.2:p.Leu144Arg
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.710T>G
  hgvsp: ENSP00000471866.1:p.Leu237Arg
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39586
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu144Arg
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

19-43680300-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680300
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680300
    reference: chr 19
allele count: 108
allele frequency: 8.925029750099166e-4
allele num: 121008
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.431T>C
  hgvsp: ENSP00000386008.1:p.Leu144Pro
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.431T>C
  hgvsp: ENSP00000385250.1:p.Leu144Pro
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.710T>C
  hgvsp: ENSP00000471866.1:p.Leu237Pro
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.431T>C
  hgvsp: ENSP00000382334.2:p.Leu144Pro
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-6010T>C
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.431T>C
  hgvsp: ENSP00000344413.6:p.Leu144Pro
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.520T>C
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39586
  bin: 9.75e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu144Pro
num of homozygotes: 1
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-43680303-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680303
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680303
    reference: chr 19
allele count: 1
allele frequency: 8.273077750384698e-6
allele num: 120874
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.431-3C>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.520-3C>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-6013C>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.431-3C>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.710-3C>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.431-3C>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.431-3C>G
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39562
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52187
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
hgvs: c.431-3C>G
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

19-43680307-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680307
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680307
    reference: chr 19
allele count: 2
allele frequency: 1.659310390601666e-5
allele num: 120532
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.431-7C>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.431-7C>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.520-7C>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-6017C>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.431-7C>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.431-7C>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.710-7C>A
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39562
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52186
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4895
  bin: 6.25e1
  variant carriers: 0
hgvs: c.431-7C>A
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

19-43680308-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680308
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680308
    reference: chr 19
allele count: 1
allele frequency: 8.303303053954863e-6
allele num: 120434
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.431-8C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.520-8C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.431-8C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.431-8C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.710-8C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.431-8C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-6018C>T
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39562
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 9.25e1
  variant carriers: 0
hgvs: c.431-8C>T
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD

19-43680310-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680310
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680310
    reference: chr 19
allele count: 4
allele frequency: 3.323197580712161e-5
allele num: 120366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.520-10A>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.431-10A>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.431-10A>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-6020A>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.431-10A>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.710-10A>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.431-10A>G
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39562
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52186
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

19-43680323-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680323
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680323
    reference: chr 19
allele count: 9
allele frequency: 7.535542642798533e-5
allele num: 119434
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.520-23T>C
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.431-23T>C
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.431-23T>C
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.710-23T>C
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.431-23T>C
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-6033T>C
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.431-23T>C
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39561
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP

19-43680329-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680329
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680329
    reference: chr 19
allele count: 1
allele frequency: 8.448086508405846e-6
allele num: 118370
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.431-29G>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-6039G>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.431-29G>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.710-29G>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.431-29G>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.520-29G>A
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.431-29G>A
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39558
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1878
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP

19-43680330-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680330
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680330
    reference: chr 19
allele count: 1
allele frequency: 8.444662129068216e-6
allele num: 118418
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.431-30A>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.431-30A>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.520-30A>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.431-30A>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.431-30A>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.710-30A>G
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-6040A>G
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39557
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1935
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

19-43680331-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680331
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680331
    reference: chr 19
allele count: 4
allele frequency: 3.378777896035004e-5
allele num: 118386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.431-31C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.431-31C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-6041C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.520-31C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.431-31C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.431-31C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.710-31C>T
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39558
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

19-43680336-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43680336
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 43680336
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 118140
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000471866
  ensembl transcript: ENST00000599812
  gene symbol: PSG5
  hgvsc: ENST00000599812.1:c.710-36C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386053
  ensembl transcript: ENST00000407568
  gene symbol: PSG5
  hgvsc: ENST00000407568.1:c.431-6046C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl transcript: ENST00000600817
  gene symbol: PSG5
  hgvsc: ENST00000600817.1:n.520-36C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000344413
  ensembl transcript: ENST00000342951
  gene symbol: PSG5
  hgvsc: ENST00000342951.6:c.431-36C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000386008
  ensembl transcript: ENST00000407356
  gene symbol: PSG5
  hgvsc: ENST00000407356.1:c.431-36C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000382334
  ensembl transcript: ENST00000366175
  gene symbol: PSG5
  hgvsc: ENST00000366175.3:c.431-36C>T
  variant of: http://identifiers.org/hgnc/9522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204941
  ensembl protein: ENSP00000385250
  ensembl transcript: ENST00000404580
  gene symbol: PSG5
  hgvsc: ENST00000404580.1:c.431-36C>T
  variant of: http://identifiers.org/hgnc/9522
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39555
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 148
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55895
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 215
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2497
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.72951936174353e-5
allele num: 10278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001831116981359e-5
allele num: 66626
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.566e0

MQ
type: SiteQuality
SIO_000300: 3.492e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.857e0

QD
type: SiteQuality
SIO_000300: 1.13e1

MQRankSum
type: SiteQuality
SIO_000300: -4.71e-1

DP
type: SiteQuality
SIO_000300: 8.412453e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 1.111e0

GenotypeQuality
all individuals: 147
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2485
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55894
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.926e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.661e0

MQRankSum
type: SiteQuality
SIO_000300: 6.01e-1

QD
type: SiteQuality
SIO_000300: 2.714e1

MQ
type: SiteQuality
SIO_000300: 3.477e1

VQSLOD
type: SiteQuality
SIO_000300: -4.449e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.305e0

DP
type: SiteQuality
SIO_000300: 8.411156e6

GenotypeQuality
all individuals: 250
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55894
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.754194303550527e-5
allele num: 10252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.01e-1

FS
type: SiteQuality
SIO_000300: 2.1613e1

VQSLOD
type: SiteQuality
SIO_000300: -5.584e0

MQRankSum
type: SiteQuality
SIO_000300: 1.97e0

MQ
type: SiteQuality
SIO_000300: 4.285e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 8.41073e6

QD
type: SiteQuality
SIO_000300: 1.933e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2366
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.03e-1

FS
type: SiteQuality
SIO_000300: 6.331e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.033e1

VQSLOD
type: SiteQuality
SIO_000300: -4.324e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e0

MQ
type: SiteQuality
SIO_000300: 3.359e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.594e0

DP
type: SiteQuality
SIO_000300: 8.409734e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.44e-1

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55893
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502268425322237e-5
allele num: 66566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 4.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.354e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-1

QD
type: SiteQuality
SIO_000300: 1.375e1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

VQSLOD
type: SiteQuality
SIO_000300: -4.324e0

MQ
type: SiteQuality
SIO_000300: 3.209e1

DP
type: SiteQuality
SIO_000300: 8.409117e6

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.50815976918222e-5
allele num: 66546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.960015680125441e-4
allele num: 10204
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.469e0

DP
type: SiteQuality
SIO_000300: 8.407819e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.43e-2

MQ
type: SiteQuality
SIO_000300: 2.797e1

MQRankSum
type: SiteQuality
SIO_000300: -4.03e-1

FS
type: SiteQuality
SIO_000300: 1.104e0

QD
type: SiteQuality
SIO_000300: 1.811e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.27e-1

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55893
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 2358
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66534
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 1.274259949029602e-3
allele num: 10202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.749e0

MQRankSum
type: SiteQuality
SIO_000300: -1.64e-1

QD
type: SiteQuality
SIO_000300: 1.203e1

FS
type: SiteQuality
SIO_000300: 5.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.816e0

MQ
type: SiteQuality
SIO_000300: 2.778e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

DP
type: SiteQuality
SIO_000300: 8.407805e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.72e-1

GenotypeQuality
all individuals: 97
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56531
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2119
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502900598154438e-5
allele num: 66538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.793e1

FS
type: SiteQuality
SIO_000300: 2.463e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.76e-1

DP
type: SiteQuality
SIO_000300: 8.611809e6

MQRankSum
type: SiteQuality
SIO_000300: -3.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.082e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

QD
type: SiteQuality
SIO_000300: 1.505e1

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 74
bin: 2.75e1
variant carriers: 5

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 7

GenotypeQuality
all individuals: 160
bin: 7.25e1
variant carriers: 15

GenotypeQuality
all individuals: 451
bin: 6.75e1
variant carriers: 22

GenotypeQuality
all individuals: 197
bin: 7.75e1
variant carriers: 15

GenotypeQuality
all individuals: 2119
bin: 6.25e1
variant carriers: 14

GenotypeQuality
all individuals: 88
bin: 3.75e1
variant carriers: 10

GenotypeQuality
all individuals: 110
bin: 8.75e1
variant carriers: 10

GenotypeQuality
all individuals: 56531
bin: 9.75e1
variant carriers: 24293

GenotypeQuality
all individuals: 180
bin: 8.25e1
variant carriers: 28

European (Non-Finnish)
type: Population
allele count: 11352
allele frequency: 1.706092759024918e-1
allele num: 66538
num of homozygotes: 1144

Other
type: Population
allele count: 206
allele frequency: 2.268722466960352e-1
allele num: 908
num of homozygotes: 28

East Asian
type: Population
allele count: 5191
allele frequency: 6.010884668828161e-1
allele num: 8636
num of homozygotes: 1571

South Asian
type: Population
allele count: 6038
allele frequency: 3.658507028599127e-1
allele num: 16504
num of homozygotes: 1132

African
type: Population
allele count: 2028
allele frequency: 1.989795918367347e-1
allele num: 10192
num of homozygotes: 258

Latino
type: Population
allele count: 3141
allele frequency: 2.714779602420052e-1
allele num: 11570
num of homozygotes: 457

European (Finnish)
type: Population
allele count: 1200
allele frequency: 1.814333232537043e-1
allele num: 6614
num of homozygotes: 103

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

FS
type: SiteQuality
SIO_000300: 2.463e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.082e-1

DP
type: SiteQuality
SIO_000300: 8.611809e6

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 2.793e1

QD
type: SiteQuality
SIO_000300: 1.505e1

GenotypeQuality
all individuals: 208
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4320
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53426
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

FS
type: SiteQuality
SIO_000300: 8.058e0

MQRankSum
type: SiteQuality
SIO_000300: 9.419999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.283e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 7.5646e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-2

MQ
type: SiteQuality
SIO_000300: 2.806e1

QD
type: SiteQuality
SIO_000300: 1.361e1

GenotypeQuality
all individuals: 274
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4359
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53426
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 208
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503488092374308e-5
allele num: 66512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.868e1

VQSLOD
type: SiteQuality
SIO_000300: -6.524e0

DP
type: SiteQuality
SIO_000300: 7.565075e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.062e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 1.593e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.427e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.065e0

QD
type: SiteQuality
SIO_000300: 1.15e1

GenotypeQuality
all individuals: 81
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53497
bin: 9.75e1
variant carriers: 371

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 113
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 334
allele frequency: 3.27515199058639e-2
allele num: 10198
num of homozygotes: 10

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 36
allele frequency: 3.110957483581058e-3
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.105199843613726e-4
allele num: 66502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817300702689605e-4
allele num: 16508
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.34e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.741e0

QD
type: SiteQuality
SIO_000300: 1.215e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.67e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

MQ
type: SiteQuality
SIO_000300: 2.772e1

DP
type: SiteQuality
SIO_000300: 7.575076e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53497
bin: 9.75e1
variant carriers: 177

GenotypeQuality
all individuals: 4375
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 96
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 181
allele frequency: 1.774857815257894e-2
allele num: 10198
num of homozygotes: 5

Latino
type: Population
allele count: 2
allele frequency: 1.728309713100588e-4
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.511142522029412e-5
allele num: 66502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.21e-1

FS
type: SiteQuality
SIO_000300: 5.27e-1

QD
type: SiteQuality
SIO_000300: 1.215e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.67e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

MQ
type: SiteQuality
SIO_000300: 2.772e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.34e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.741e0

DP
type: SiteQuality
SIO_000300: 7.575076e6

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53428
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 4413
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.63460140537921e-4
allele num: 16508
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e0

FS
type: SiteQuality
SIO_000300: 7.055e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

QD
type: SiteQuality
SIO_000300: 1.434e1

DP
type: SiteQuality
SIO_000300: 7.558394e6

VQSLOD
type: SiteQuality
SIO_000300: -5.001e0

MQRankSum
type: SiteQuality
SIO_000300: -7.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.2e-2

MQ
type: SiteQuality
SIO_000300: 2.825e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.8e-2

GenotypeQuality
all individuals: 210
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.801999607920016e-5
allele num: 10202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-2

MQ
type: SiteQuality
SIO_000300: 2.777e1

MQRankSum
type: SiteQuality
SIO_000300: -3.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.709e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 2.507e0

VQSLOD
type: SiteQuality
SIO_000300: -5.055e0

DP
type: SiteQuality
SIO_000300: 7.558316e6

QD
type: SiteQuality
SIO_000300: 1.068e1

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53424
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4470
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.055e0

QD
type: SiteQuality
SIO_000300: 1.068e1

FS
type: SiteQuality
SIO_000300: 2.507e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.12e-1

DP
type: SiteQuality
SIO_000300: 7.558316e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.709e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.76e-1

MQ
type: SiteQuality
SIO_000300: 2.777e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-2

GenotypeQuality
all individuals: 96
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53424
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 210
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503397678753984e-5
allele num: 66516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.558453e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 1.048e0

MQ
type: SiteQuality
SIO_000300: 2.839e1

QD
type: SiteQuality
SIO_000300: 1.334e1

MQRankSum
type: SiteQuality
SIO_000300: 2.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.333e0

VQSLOD
type: SiteQuality
SIO_000300: -5.498e0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.625346901017577e-4
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.012e1

MQRankSum
type: SiteQuality
SIO_000300: 2.61e-1

MQ
type: SiteQuality
SIO_000300: 2.939e1

DP
type: SiteQuality
SIO_000300: 7.55904e6

VQSLOD
type: SiteQuality
SIO_000300: -4.647e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e-1

QD
type: SiteQuality
SIO_000300: 1.217e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.62e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.012144531954548e-5
allele num: 66532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.199e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.017e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.966e0

QD
type: SiteQuality
SIO_000300: 1.279e1

MQRankSum
type: SiteQuality
SIO_000300: 8.52e-1

MQ
type: SiteQuality
SIO_000300: 2.865e1

DP
type: SiteQuality
SIO_000300: 7.560033e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 60
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variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.966e0

QD
type: SiteQuality
SIO_000300: 1.279e1

MQRankSum
type: SiteQuality
SIO_000300: 8.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.017e0

MQ
type: SiteQuality
SIO_000300: 2.865e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

FS
type: SiteQuality
SIO_000300: 3.199e0

DP
type: SiteQuality
SIO_000300: 7.560033e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 53429
bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.011060351045924e-5
allele num: 66544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.15e0

MQRankSum
type: SiteQuality
SIO_000300: -1.165e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1

QD
type: SiteQuality
SIO_000300: 1.219e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

FS
type: SiteQuality
SIO_000300: 1.109e0

VQSLOD
type: SiteQuality
SIO_000300: -3.551e0

MQ
type: SiteQuality
SIO_000300: 2.826e1

DP
type: SiteQuality
SIO_000300: 7.560266e6

GenotypeQuality
all individuals: 257
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 880
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variant carriers: 0

GenotypeQuality
all individuals: 209
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variant carriers: 0

GenotypeQuality
all individuals: 284
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variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.957330201605011e-4
allele num: 10218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.819e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.0e-1

FS
type: SiteQuality
SIO_000300: 2.0474e1

DP
type: SiteQuality
SIO_000300: 7.5601e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.021e1

VQSLOD
type: SiteQuality
SIO_000300: -7.105e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQRankSum
type: SiteQuality
SIO_000300: -2.6e0

QD
type: SiteQuality
SIO_000300: 1.26e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 144
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502584445245823e-5
allele num: 66552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

FS
type: SiteQuality
SIO_000300: 4.32e-1

MQ
type: SiteQuality
SIO_000300: 2.984e1

QD
type: SiteQuality
SIO_000300: 1.289e1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.25e-1

DP
type: SiteQuality
SIO_000300: 7.560641e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.991e0

VQSLOD
type: SiteQuality
SIO_000300: -4.604e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66564
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.259e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQ
type: SiteQuality
SIO_000300: 3.389e1

VQSLOD
type: SiteQuality
SIO_000300: -4.091e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.24e-1

FS
type: SiteQuality
SIO_000300: 8.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.02e0

DP
type: SiteQuality
SIO_000300: 7.561209e6

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.12e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.561602e6

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQ
type: SiteQuality
SIO_000300: 3.213e1

QD
type: SiteQuality
SIO_000300: 1.093e1

FS
type: SiteQuality
SIO_000300: 1.101e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

FS
type: SiteQuality
SIO_000300: 1.101e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -6.68e0

MQ
type: SiteQuality
SIO_000300: 3.213e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 65
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53429
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501907422426482e-5
allele num: 66582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.74e-1

DP
type: SiteQuality
SIO_000300: 7.561672e6

MQ
type: SiteQuality
SIO_000300: 3.652e1

VQSLOD
type: SiteQuality
SIO_000300: -2.907e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.66e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.04e-1

QD
type: SiteQuality
SIO_000300: 1.214e1

GenotypeQuality
all individuals: 272
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4763
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50159168718842e-5
allele num: 66596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

DP
type: SiteQuality
SIO_000300: 7.561949e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.537e0

MQRankSum
type: SiteQuality
SIO_000300: -6.17e-1

FS
type: SiteQuality
SIO_000300: 6.516e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.108e0

MQ
type: SiteQuality
SIO_000300: 3.606e1

QD
type: SiteQuality
SIO_000300: 1.276e1

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53430
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.952362358453729e-4
allele num: 10244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.446e0

QD
type: SiteQuality
SIO_000300: 1.215e1

MQ
type: SiteQuality
SIO_000300: 3.745e1

DP
type: SiteQuality
SIO_000300: 7.562134e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e-1

FS
type: SiteQuality
SIO_000300: 1.729e0

MQRankSum
type: SiteQuality
SIO_000300: 8.35e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.998e0

GenotypeQuality
all individuals: 211
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4748
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
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GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53430
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66608
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.28e-1

MQ
type: SiteQuality
SIO_000300: 3.927e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

QD
type: SiteQuality
SIO_000300: 1.506e1

FS
type: SiteQuality
SIO_000300: 5.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.06e-1

DP
type: SiteQuality
SIO_000300: 7.562812e6

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 35
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4776
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 7.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.949697796841489e-4
allele num: 10258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002732486562772e-5
allele num: 66606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.614e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 7.564098e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQ
type: SiteQuality
SIO_000300: 3.818e1

QD
type: SiteQuality
SIO_000300: 1.076e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.849e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.241e0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
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variant carriers: 0

GenotypeQuality
all individuals: 4776
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 53421
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 9.748488984207447e-5
allele num: 10258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.614e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.849e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQ
type: SiteQuality
SIO_000300: 3.818e1

QD
type: SiteQuality
SIO_000300: 1.076e1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.241e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.564098e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4912
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 143
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GenotypeQuality
all individuals: 53425
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GenotypeQuality
all individuals: 211
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variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 271
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.716284492809949e-5
allele num: 10292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000930288389401e-5
allele num: 66646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 4.675e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.362e0

MQRankSum
type: SiteQuality
SIO_000300: -2.119e0

DP
type: SiteQuality
SIO_000300: 7.565487e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

FS
type: SiteQuality
SIO_000300: 3.8248e1

VQSLOD
type: SiteQuality
SIO_000300: -9.324e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.73e0

QD
type: SiteQuality
SIO_000300: 6.899999999999999e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
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variant carriers: 229

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 78
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GenotypeQuality
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GenotypeQuality
all individuals: 4997
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GenotypeQuality
all individuals: 270
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.320774282751469e-4
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.499745043342632e-4
allele num: 66678
num of homozygotes: 0

African
type: Population
allele count: 231
allele frequency: 2.233610520208857e-2
allele num: 10342
num of homozygotes: 14

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.58e-1

FS
type: SiteQuality
SIO_000300: 5.18e-1

MQ
type: SiteQuality
SIO_000300: 4.309e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.909999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.337e1

DP
type: SiteQuality
SIO_000300: 7.586242e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.079e0

MQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 273
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
all individuals: 212
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817300702689605e-4
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.803e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.718e0

MQ
type: SiteQuality
SIO_000300: 3.684e1

DP
type: SiteQuality
SIO_000300: 7.563796e6

QD
type: SiteQuality
SIO_000300: 1.176e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.51e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 272
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GenotypeQuality
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GenotypeQuality
all individuals: 53437
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 142
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.055e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.84e-1

DP
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SIO_000300: 7.565767e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.158e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.86e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.572e0

VQSLOD
type: SiteQuality
SIO_000300: -2.753e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.131e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 53437
bin: 9.75e1
variant carriers: 25

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728309713100588e-4
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 20
allele frequency: 1.929384526336099e-3
allele num: 10366
num of homozygotes: 1

South Asian
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allele count: 4
allele frequency: 2.423361201987156e-4
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.84e-1

MQ
type: SiteQuality
SIO_000300: 4.131e1

QD
type: SiteQuality
SIO_000300: 1.055e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.86e-2

DP
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SIO_000300: 7.565767e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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SIO_000300: -2.753e0

BaseQRankSum
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SIO_000300: -3.572e0

MQRankSum
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SIO_000300: -4.158e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 53441
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.887e0

QD
type: SiteQuality
SIO_000300: 1.188e1

FS
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
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SIO_000300: -2.137e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

DP
type: SiteQuality
SIO_000300: 7.563246e6

MQRankSum
type: SiteQuality
SIO_000300: -1.063e0

MQ
type: SiteQuality
SIO_000300: 4.481e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.03e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 241
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GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.605285e6

VQSLOD
type: SiteQuality
SIO_000300: -4.748e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.919e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.13e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.03e-1

MQ
type: SiteQuality
SIO_000300: 4.556e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 1.223e1

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
all individuals: 53478
bin: 9.75e1
variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.42306760358614e-4
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.919e0

DP
type: SiteQuality
SIO_000300: 7.605285e6

MQRankSum
type: SiteQuality
SIO_000300: 8.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.13e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.05e-1

MQ
type: SiteQuality
SIO_000300: 4.556e1

VQSLOD
type: SiteQuality
SIO_000300: -4.748e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.223e1

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 291
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 270
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GenotypeQuality
all individuals: 53478
bin: 9.75e1
variant carriers: 370

African
type: Population
allele count: 8
allele frequency: 7.714561234329798e-4
allele num: 10370
num of homozygotes: 0

Latino
type: Population
allele count: 26
allele frequency: 2.246802627030764e-3
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 35
allele frequency: 2.120184153137872e-3
allele num: 16508
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 11
allele frequency: 1.663138796492289e-3
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 296
allele frequency: 4.438979034821991e-3
allele num: 66682
num of homozygotes: 6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.13e-2

QD
type: SiteQuality
SIO_000300: 1.223e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

VQSLOD
type: SiteQuality
SIO_000300: -4.748e-1

DP
type: SiteQuality
SIO_000300: 7.605285e6

MQ
type: SiteQuality
SIO_000300: 4.556e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.919e0

MQRankSum
type: SiteQuality
SIO_000300: 8.03e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 294
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 238

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Latino
type: Population
allele count: 241
allele frequency: 2.082613204286208e-2
allele num: 11572
num of homozygotes: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.71e-2

MQ
type: SiteQuality
SIO_000300: 4.573e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

QD
type: SiteQuality
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DP
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SIO_000300: 7.596283e6

FS
type: SiteQuality
SIO_000300: 5.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.05e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.387e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.999220202747286e-5
allele num: 66684
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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Latino
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num of homozygotes: 0

Other
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MQRankSum
type: SiteQuality
SIO_000300: 3.05e-1

DP
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 5.24e-1

MQ
type: SiteQuality
SIO_000300: 4.573e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.71e-2

QD
type: SiteQuality
SIO_000300: 1.371e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10372
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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Other
type: Population
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allele num: 908
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MQ
type: SiteQuality
SIO_000300: 4.635e1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: -2.79e-1

DP
type: SiteQuality
SIO_000300: 7.555967e6

QD
type: SiteQuality
SIO_000300: 1.24e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.52e-1

ClippingRankSum
type: SiteQuality
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 140
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

South Asian
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

QD
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQ
type: SiteQuality
SIO_000300: 4.452e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

GenotypeQuality
all individuals: 297
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53427
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 242
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.839e0

VQSLOD
type: SiteQuality
SIO_000300: -1.968e0

DP
type: SiteQuality
SIO_000300: 7.556207e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

FS
type: SiteQuality
SIO_000300: 2.513e0

QD
type: SiteQuality
SIO_000300: 1.292e1

MQRankSum
type: SiteQuality
SIO_000300: 5.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQ
type: SiteQuality
SIO_000300: 4.535e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-1

GenotypeQuality
all individuals: 58
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53428
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.68e-1

QD
type: SiteQuality
SIO_000300: 1.195e1

MQ
type: SiteQuality
SIO_000300: 4.843e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

DP
type: SiteQuality
SIO_000300: 7.556521e6

MQRankSum
type: SiteQuality
SIO_000300: -1.603e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.272e0

VQSLOD
type: SiteQuality
SIO_000300: -2.02e0

GenotypeQuality
all individuals: 70
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.38e0

VQSLOD
type: SiteQuality
SIO_000300: -3.452e1

DP
type: SiteQuality
SIO_000300: 7.556409e6

MQRankSum
type: SiteQuality
SIO_000300: -1.289e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.021e0

FS
type: SiteQuality
SIO_000300: 5.745e1

MQ
type: SiteQuality
SIO_000300: 5.071e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.27e0

QD
type: SiteQuality
SIO_000300: 3.88e0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53429
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.156e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e0

MQRankSum
type: SiteQuality
SIO_000300: -1.031e1

MQ
type: SiteQuality
SIO_000300: 5.071e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.245e0

QD
type: SiteQuality
SIO_000300: 4.31e0

VQSLOD
type: SiteQuality
SIO_000300: -1.791e1

DP
type: SiteQuality
SIO_000300: 7.556433e6

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53429
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 242
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.22e-1

DP
type: SiteQuality
SIO_000300: 7.556279e6

VQSLOD
type: SiteQuality
SIO_000300: -1.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

FS
type: SiteQuality
SIO_000300: 1.75e0

MQ
type: SiteQuality
SIO_000300: 4.775e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

QD
type: SiteQuality
SIO_000300: 1.406e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4537
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 70
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 54352
bin: 9.75e1
variant carriers: 20240

GenotypeQuality
all individuals: 99
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 161
bin: 9.25e1
variant carriers: 11

African
type: Population
allele count: 1828
allele frequency: 1.764138197259216e-1
allele num: 10362
num of homozygotes: 198

European (Finnish)
type: Population
allele count: 1674
allele frequency: 2.531760435571688e-1
allele num: 6612
num of homozygotes: 208

Latino
type: Population
allele count: 1079
allele frequency: 9.32423090217767e-2
allele num: 11572
num of homozygotes: 53

European (Non-Finnish)
type: Population
allele count: 17348
allele frequency: 2.601757701190798e-1
allele num: 66678
num of homozygotes: 2481

South Asian
type: Population
allele count: 1210
allele frequency: 7.331555986427532e-2
allele num: 16504
num of homozygotes: 61

East Asian
type: Population
allele count: 3
allele frequency: 3.469010175763182e-4
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 161
allele frequency: 1.773127753303965e-1
allele num: 908
num of homozygotes: 17

DP
type: SiteQuality
SIO_000300: 1.0086697e7

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

QD
type: SiteQuality
SIO_000300: 1.606e1

MQ
type: SiteQuality
SIO_000300: 4.74e1

VQSLOD
type: SiteQuality
SIO_000300: 3.07e0

FS
type: SiteQuality
SIO_000300: 5.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.160000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.41e-1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52200
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5963
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66650
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.752e1

FS
type: SiteQuality
SIO_000300: 1.402e0

VQSLOD
type: SiteQuality
SIO_000300: -1.615e0

QD
type: SiteQuality
SIO_000300: 1.22e1

MQRankSum
type: SiteQuality
SIO_000300: -1.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.406e0

DP
type: SiteQuality
SIO_000300: 6.530036e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.87e-1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52200
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.534e1

MQ
type: SiteQuality
SIO_000300: 3.855e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.529073e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

VQSLOD
type: SiteQuality
SIO_000300: -2.606e0

MQRankSum
type: SiteQuality
SIO_000300: 1.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.94e-1

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52199
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501140867058965e-5
allele num: 66616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.689e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.788e0

VQSLOD
type: SiteQuality
SIO_000300: -2.272e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.26e-1

DP
type: SiteQuality
SIO_000300: 6.528349e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.71e-1

FS
type: SiteQuality
SIO_000300: 2.541e0

QD
type: SiteQuality
SIO_000300: 5.6e0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5869
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.626416840157298e-4
allele num: 8646
num of homozygotes: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.445e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.79e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.222e0

FS
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SIO_000300: 1.843e0

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.87e-1

DP
type: SiteQuality
SIO_000300: 6.527744e6

MQ
type: SiteQuality
SIO_000300: 4.605e1

QD
type: SiteQuality
SIO_000300: 1.26e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.715e1

DP
type: SiteQuality
SIO_000300: 6.526834e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.665571235260003e-5
allele num: 10346
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.805e0

DP
type: SiteQuality
SIO_000300: 6.526834e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

MQ
type: SiteQuality
SIO_000300: 4.715e1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -9.53e-1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

FS
type: SiteQuality
SIO_000300: 1.125e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.35e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502042778178322e-5
allele num: 66576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -6.08e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.834e1

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

FS
type: SiteQuality
SIO_000300: 1.748e0

VQSLOD
type: SiteQuality
SIO_000300: -2.188e0

DP
type: SiteQuality
SIO_000300: 6.525842e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.99e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 229
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073120369245719e-5
allele num: 16466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.734e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

MQ
type: SiteQuality
SIO_000300: 3.39e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.66e-1

QD
type: SiteQuality
SIO_000300: 1.393e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.398e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

DP
type: SiteQuality
SIO_000300: 6.525013e6

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502358703163967e-5
allele num: 66562
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.317e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -8.9e-2

DP
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.396e0

FS
type: SiteQuality
SIO_000300: 6.175e0

MQ
type: SiteQuality
SIO_000300: 4.648e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66548
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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South Asian
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ClippingRankSum
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MQRankSum
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QD
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ReadPosRankSum
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.095330976472023e-5
allele num: 16406
num of homozygotes: 0

Other
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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QD
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ReadPosRankSum
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FS
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ClippingRankSum
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DP
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 104

European (Finnish)
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allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.208374665584513e-4
allele num: 66534
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Other
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Latino
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East Asian
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South Asian
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African
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allele frequency: 1.934610176049526e-4
allele num: 10338
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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VQSLOD
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MQRankSum
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FS
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MQ
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DP
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QD
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Finnish)
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East Asian
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Other
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European (Non-Finnish)
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South Asian
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allele num: 16300
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QD
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BaseQRankSum
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SIO_000300: 6.56e-1

DP
type: SiteQuality
SIO_000300: 6.510611e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 3.485e1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.848e0

VQSLOD
type: SiteQuality
SIO_000300: -5.338e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16078
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.728608470181504e-4
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-2

DP
type: SiteQuality
SIO_000300: 6.499521e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.08e-1

MQ
type: SiteQuality
SIO_000300: 4.601e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.53e-1

FS
type: SiteQuality
SIO_000300: 4.649e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

QD
type: SiteQuality
SIO_000300: 1.194e1

VQSLOD
type: SiteQuality
SIO_000300: -2.017e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506841058405159e-5
allele num: 66364
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.491e0

MQ
type: SiteQuality
SIO_000300: 4.508e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.363e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.394e0

DP
type: SiteQuality
SIO_000300: 6.496129e6

QD
type: SiteQuality
SIO_000300: 8.289999999999999e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4630
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.028636021100226e-5
allele num: 66350
num of homozygotes: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15964
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.948e0

DP
type: SiteQuality
SIO_000300: 6.493417e6

QD
type: SiteQuality
SIO_000300: 1.568e1

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.580000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.56e0

FS
type: SiteQuality
SIO_000300: 2.904e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.12e-1

MQ
type: SiteQuality
SIO_000300: 4.415e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 9

East Asian
type: Population
allele count: 9
allele frequency: 1.044083526682135e-3
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15292
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.143e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.02e-1

FS
type: SiteQuality
SIO_000300: 2.225e0

MQ
type: SiteQuality
SIO_000300: 4.594e1

QD
type: SiteQuality
SIO_000300: 1.255e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.93e0

DP
type: SiteQuality
SIO_000300: 6.44995e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14534
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518418415378542e-5
allele num: 65858
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.457e0

QD
type: SiteQuality
SIO_000300: 1.307e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.216e0

FS
type: SiteQuality
SIO_000300: 5.408e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

VQSLOD
type: SiteQuality
SIO_000300: -2.392e0

MQ
type: SiteQuality
SIO_000300: 4.24e1

MQRankSum
type: SiteQuality
SIO_000300: -1.226e0

DP
type: SiteQuality
SIO_000300: 6.432817e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14564
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517957436473481e-5
allele num: 65878
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQ
type: SiteQuality
SIO_000300: 4.415e1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 6.4322e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.197e0

QD
type: SiteQuality
SIO_000300: 1.377e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14550
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65864
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Other
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allele frequency: 0.0e0
allele num: 888
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African
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allele frequency: 3.878223773511732e-4
allele num: 10314
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 5.01e-1

ReadPosRankSum
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QD
type: SiteQuality
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VQSLOD
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BaseQRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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