3-53277550-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53277550
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53277550
    reference: chr 3
allele count: 1
allele frequency: 8.180628272251309e-5
allele num: 12224
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.108-1292T>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.108-1292T>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.218-1292T>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.108-1292T>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-34-1292T>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.147+49T>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.108-1292T>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.108-1292T>C
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2201
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

3-53277557-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53277557
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53277557
    reference: chr 3
allele count: 2
allele frequency: 1.636929120969062e-4
allele num: 12218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.147+42A>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.108-1299A>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.218-1299A>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.108-1299A>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-34-1299A>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.108-1299A>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.108-1299A>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.108-1299A>G
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

3-53277574-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53277574
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53277574
    reference: chr 3
allele count: 2
allele frequency: 1.633986928104575e-4
allele num: 12240
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.108-1316G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-34-1316G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.108-1316G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.108-1316G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.108-1316G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.218-1316G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.147+25G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.108-1316G>A
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

3-53277575-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53277575
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53277575
    reference: chr 3
allele count: 1
allele frequency: 8.164598301763554e-5
allele num: 12248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.147+24C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.108-1317C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.108-1317C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-34-1317C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.108-1317C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.108-1317C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.108-1317C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.218-1317C>T
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2129
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

3-53277607-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53277607
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53277607
    reference: chr 3
allele count: 3
allele frequency: 2.440611780019525e-4
allele num: 12292
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.139A>G
  hgvsp: ENSP00000417312.1:p.Ile47Val
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.108-1349A>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-34-1349A>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.108-1349A>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.108-1349A>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.108-1349A>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.218-1349A>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.108-1349A>G
  variant of: http://identifiers.org/hgnc/11834
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2889
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile47Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

3-53277615-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53277615
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53277615
    reference: chr 3
allele count: 5
allele frequency: 4.068348250610252e-4
allele num: 12290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.218-1357G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.108-1357G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.108-1357G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-34-1357G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.108-1357G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.108-1357G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.131G>A
  hgvsp: ENSP00000417312.1:p.Arg44Gln
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.108-1357G>A
  variant of: http://identifiers.org/hgnc/11834
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg44Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum

3-53277653-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53277653
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53277653
    reference: chr 3
allele count: 2296
allele frequency: 1.871230643846781e-1
allele num: 12270
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.108-15C>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.108-1395C>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.108-1395C>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.108-1395C>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.108-1395C>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-34-1395C>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.108-1395C>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.218-1395C>A
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.25e1
  variant carriers: 197
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 208
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 265
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 3.25e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 137
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 2.75e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 2.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 219
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 3.75e1
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 218
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 2.5e0
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 7.5e0
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 7
num of homozygotes: 242
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

3-53277668-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53277668
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53277668
    reference: chr 3
allele count: 1
allele frequency: 8.177952240758914e-5
allele num: 12228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.108-1410G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.218-1410G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.108-30G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.108-1410G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-34-1410G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.108-1410G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.108-1410G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.108-1410G>A
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2885
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/3-53277675-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53277675
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53277675
    reference: chr 3
allele count: 409
allele frequency: 3.354108577989175e-2
allele num: 12194
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.108-1417G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.108-1417G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.218-1417G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-34-1417G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.108-37G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.108-1417G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.108-1417G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.108-1417G>T
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 3.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 2.5e0
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 1.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 2.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.5e0
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 2.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 5
num of homozygotes: 8
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum

3-53277675-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53277675
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53277675
    reference: chr 3
allele count: 22
allele frequency: 1.804165983270461e-3
allele num: 12194
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.108-1417G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.108-1417G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.108-1417G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.218-1417G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-34-1417G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.108-1417G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.108-37G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.108-1417G>A
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 9.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2069
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2450
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-53277677-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53277677
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53277677
    reference: chr 3
allele count: 18
allele frequency: 1.476135804494013e-3
allele num: 12194
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.218-1419G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.108-1419G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.108-1419G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.108-1419G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.108-1419G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-34-1419G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.108-1419G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.108-39G>C
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2598
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD

3-53277685-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53277685
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53277685
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 12102
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.108-1427G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.108-47G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.218-1427G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.108-1427G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.108-1427G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.108-1427G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-34-1427G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.108-1427G>A
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3906
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

3-53289803-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289803
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289802
    reference: chr 3
allele count: 1
allele frequency: 1.019160211985324e-4
allele num: 9812
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.107+48delG
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.217+48delG
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.107+48delG
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.107+48delG
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.107+48delG
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-35+48delG
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.107+48delG
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.107+48delG
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32531
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9044
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4407
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21383
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: GC
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

3-53289804-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289804
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289804
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 9934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-35+48G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.107+48G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.107+48G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.107+48G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.107+48G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.107+48G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.107+48G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.217+48G>A
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9368
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32930
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23397
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4299
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

3-53289809-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289809
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289809
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 11056
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.107+43G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-35+43G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.107+43G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.107+43G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.107+43G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.107+43G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.217+43G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.107+43G>C
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14039
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32827
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11427
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2319
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum

http://identifiers.org/exac.variant/3-53289813-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289813
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289813
    reference: chr 3
allele count: 87
allele frequency: 6.474177705015628e-3
allele num: 13438
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.107+39G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-35+39G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.107+39G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.217+39G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.107+39G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.107+39G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.107+39G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.107+39G>T
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 1.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 21349
  bin: 7.5e0
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27654
  bin: 2.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 19074
  bin: 2.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 1.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 7.75e1
  variant carriers: 2
num of homozygotes: 1
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

3-53289818-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289818
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289818
    reference: chr 3
allele count: 1
allele frequency: 5.866478939340608e-5
allele num: 17046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.107+34G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-35+34G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.107+34G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.107+34G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.217+34G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.107+34G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.107+34G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.107+34G>A
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19013
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30093
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18276
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28125
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

3-53289819-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289819
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289819
    reference: chr 3
allele count: 2
allele frequency: 1.096731739416539e-4
allele num: 18236
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.107+33C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.107+33C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.107+33C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.107+33C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.107+33C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-35+33C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.107+33C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.217+33C>T
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31699
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29754
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

3-53289831-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289831
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289831
    reference: chr 3
allele count: 1
allele frequency: 2.847866947656206e-5
allele num: 35114
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.107+21G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-35+21G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.107+21G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.107+21G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.107+21G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.107+21G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.107+21G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.217+21G>A
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11260
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34867
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6706
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6632
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1695
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-53289834-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289834
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289834
    reference: chr 3
allele count: 1
allele frequency: 2.381973226620933e-5
allele num: 41982
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.107+18G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.107+18G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.107+18G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.107+18G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.107+18G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-35+18G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.217+18G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.107+18G>T
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14049
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13947
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32063
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

3-53289835-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289835
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289835
    reference: chr 3
allele count: 1
allele frequency: 2.218180204959851e-5
allele num: 45082
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.107+17G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.107+17G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.217+17G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-35+17G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.107+17G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.107+17G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.107+17G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.107+17G>C
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15446
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4551
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/3-53289835-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289835
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289835
    reference: chr 3
allele count: 2
allele frequency: 4.436360409919702e-5
allele num: 45082
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.107+17G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.107+17G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.107+17G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.107+17G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.107+17G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.107+17G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-35+17G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.217+17G>T
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1405
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31138
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 5.25e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/3-53289866-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289866
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289866
    reference: chr 3
allele count: 3
allele frequency: 2.858504049547403e-5
allele num: 104950
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.203T>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.93T>G
  hgvsp: ENST00000469678.1:c.93T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-49T>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.93T>G
  hgvsp: ENST00000423525.2:c.93T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.93T>G
  hgvsp: ENST00000423516.1:c.93T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.93T>G
  hgvsp: ENST00000450814.2:c.93T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.93T>G
  hgvsp: ENST00000462138.1:c.93T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.93T>G
  hgvsp: ENST00000472528.1:c.93T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6328
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr31Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/3-53289875-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289875
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289875
    reference: chr 3
allele count: 1
allele frequency: 9.245220221145668e-6
allele num: 108164
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.84G>T
  hgvsp: ENSP00000418340.1:p.Gln28His
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.84G>T
  hgvsp: ENSP00000417773.1:p.Gln28His
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.84G>T
  hgvsp: ENSP00000417312.1:p.Gln28His
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.84G>T
  hgvsp: ENSP00000405455.2:p.Gln28His
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.194G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.84G>T
  hgvsp: ENSP00000413503.2:p.Gln28His
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.84G>T
  hgvsp: ENSP00000391481.1:p.Gln28His
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-58G>T
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43333
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5892
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44800
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln28His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS

3-53289886-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289886
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289886
    reference: chr 3
allele count: 2
allele frequency: 1.812349348460409e-5
allele num: 110354
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.73A>G
  hgvsp: ENSP00000417312.1:p.Ser25Gly
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.73A>G
  hgvsp: ENSP00000405455.2:p.Ser25Gly
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.73A>G
  hgvsp: ENSP00000413503.2:p.Ser25Gly
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.183A>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.73A>G
  hgvsp: ENSP00000391481.1:p.Ser25Gly
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.73A>G
  hgvsp: ENSP00000417773.1:p.Ser25Gly
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-69A>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.73A>G
  hgvsp: ENSP00000418340.1:p.Ser25Gly
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4660
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5067
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4015
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser25Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS

3-53289900-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289900
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289900
    reference: chr 3
allele count: 1
allele frequency: 8.953192708519857e-6
allele num: 111692
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.59A>G
  hgvsp: ENSP00000391481.1:p.Asn20Ser
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.59A>G
  hgvsp: ENSP00000417312.1:p.Asn20Ser
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.59A>G
  hgvsp: ENSP00000418340.1:p.Asn20Ser
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-83A>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.59A>G
  hgvsp: ENSP00000413503.2:p.Asn20Ser
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.59A>G
  hgvsp: ENSP00000405455.2:p.Asn20Ser
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.59A>G
  hgvsp: ENSP00000417773.1:p.Asn20Ser
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.169A>G
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4559
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn20Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

3-53289907-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289907
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289907
    reference: chr 3
allele count: 1
allele frequency: 8.926021136818052e-6
allele num: 112032
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-90A>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.52A>G
  hgvsp: ENSP00000391481.1:p.Thr18Ala
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.52A>G
  hgvsp: ENSP00000418340.1:p.Thr18Ala
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.52A>G
  hgvsp: ENSP00000413503.2:p.Thr18Ala
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.52A>G
  hgvsp: ENSP00000417312.1:p.Thr18Ala
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.162A>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.52A>G
  hgvsp: ENSP00000405455.2:p.Thr18Ala
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.52A>G
  hgvsp: ENSP00000417773.1:p.Thr18Ala
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46795
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4103
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr18Ala
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-53289920-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289920
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289920
    reference: chr 3
allele count: 4
allele frequency: 3.591502505072997e-5
allele num: 111374
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.39G>A
  hgvsp: ENST00000423516.1:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.149G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.39G>A
  hgvsp: ENST00000450814.2:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.39G>A
  hgvsp: ENST00000462138.1:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.39G>A
  hgvsp: ENST00000423525.2:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.39G>A
  hgvsp: ENST00000472528.1:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.39G>A
  hgvsp: ENST00000469678.1:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-93-10G>A
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3901
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln13Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

3-53289924-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289924
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289924
    reference: chr 3
allele count: 1
allele frequency: 8.978595029449791e-6
allele num: 111376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.145T>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.35T>C
  hgvsp: ENSP00000417312.1:p.Leu12Pro
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.35T>C
  hgvsp: ENSP00000413503.2:p.Leu12Pro
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.35T>C
  hgvsp: ENSP00000418340.1:p.Leu12Pro
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-93-14T>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.35T>C
  hgvsp: ENSP00000405455.2:p.Leu12Pro
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.35T>C
  hgvsp: ENSP00000417773.1:p.Leu12Pro
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.35T>C
  hgvsp: ENSP00000391481.1:p.Leu12Pro
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40940
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu12Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

3-53289934-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289934
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289934
    reference: chr 3
allele count: 2
allele frequency: 1.815573993718114e-5
allele num: 110158
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.25C>G
  hgvsp: ENSP00000405455.2:p.Gln9Glu
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.25C>G
  hgvsp: ENSP00000413503.2:p.Gln9Glu
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-94+18C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.25C>G
  hgvsp: ENSP00000417773.1:p.Gln9Glu
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.25C>G
  hgvsp: ENSP00000417312.1:p.Gln9Glu
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.135C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.25C>G
  hgvsp: ENSP00000418340.1:p.Gln9Glu
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.25C>G
  hgvsp: ENSP00000391481.1:p.Gln9Glu
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6997
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln9Glu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP

3-53289941-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289941
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289941
    reference: chr 3
allele count: 2
allele frequency: 1.835940368656826e-5
allele num: 108936
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-94+11G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.18G>A
  hgvsp: ENST00000450814.2:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.18G>A
  hgvsp: ENST00000462138.1:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.18G>A
  hgvsp: ENST00000472528.1:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.18G>A
  hgvsp: ENST00000469678.1:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.18G>A
  hgvsp: ENST00000423516.1:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.18G>A
  hgvsp: ENST00000423525.2:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.128G>A
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8828
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1354
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys6Lys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

3-53289963-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289963
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289963
    reference: chr 3
allele count: 2
allele frequency: 1.953621036591322e-5
allele num: 102374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.-5G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.-5G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.-5G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.106G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-105G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.-5G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.-5G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.-5G>A
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26043
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7940
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3501
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1738
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29304
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

3-53289973-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289973
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289973
    reference: chr 3
allele count: 356
allele frequency: 3.645076075604612e-3
allele num: 97666
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.-15C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.96C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.-15C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-115C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.-15C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.-15C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.-15C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.-15C>G
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 1.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 18151
  bin: 2.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9636
  bin: 7.5e0
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4672
  bin: 2.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 19362
  bin: 1.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 19248
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 9.75e1
  variant carriers: 331
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 5.25e1
  variant carriers: 4
num of homozygotes: 5
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

3-53289976-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289976
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289976
    reference: chr 3
allele count: 1
allele frequency: 1.035260989295401e-5
allele num: 96594
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.-18G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.-18G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.-18G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.-18G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.93G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-118G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.-18G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.-18G>C
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 20153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5943
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4156
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10023
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1694
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

3-53289979-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289979
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289979
    reference: chr 3
allele count: 3
allele frequency: 3.144126771191415e-5
allele num: 95416
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.-21C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.-21C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.90C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-121C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.-21C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.-21C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.-21C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.-21C>T
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3058
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20919
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16695
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5134
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum

3-53289981-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289981
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289981
    reference: chr 3
allele count: 1
allele frequency: 1.061819108496677e-5
allele num: 94178
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.-23G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.-23G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-123G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.-23G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.-23G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.88G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.-23G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.-23G>C
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10607
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6961
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1604
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2169
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20997
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

3-53289981-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289981
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289981
    reference: chr 3
allele count: 1
allele frequency: 1.061819108496677e-5
allele num: 94178
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.88G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.-23G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.-23G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.-23G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.-23G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.-23G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-123G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.-23G>A
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10607
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6961
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2169
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20997
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5312
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

3-53289987-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289987
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289987
    reference: chr 3
allele count: 1
allele frequency: 1.082954299328568e-5
allele num: 92340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.-29G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.-29G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.-29G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-129G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.-29G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.82G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.-29G>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.-29G>C
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22345
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7773
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12777
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3598
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD

3-53289989-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289989
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289989
    reference: chr 3
allele count: 1
allele frequency: 1.088186645773483e-5
allele num: 91896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.-31G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.-31G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.-31G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.80G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.-31G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.-31G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-131G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.-31G>A
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7838
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6828
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5575
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

3-53289990-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289990
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289990
    reference: chr 3
allele count: 5
allele frequency: 5.464242000349711e-5
allele num: 91504
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-132C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.-32C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.-32C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.79C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.-32C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.-32C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.-32C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.-32C>T
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7999
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22642
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11418
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12535
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5606
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

3-53289990-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289990
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289990
    reference: chr 3
allele count: 1
allele frequency: 1.092848400069942e-5
allele num: 91504
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.-32C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.-32C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.-32C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-132C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.-32C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.-32C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000418340
  ensembl transcript: ENST00000469678
  gene symbol: TKT
  hgvsc: ENST00000469678.1:c.-32C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.79C>G
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7999
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22642
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3645
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21827
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

3-53289997-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289997
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289997
    reference: chr 3
allele count: 1
allele frequency: 1.121604342852015e-5
allele num: 89158
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.72G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.-39G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.-39G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.-39G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.-39G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.-39G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-139G>A
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10646
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22382
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20542
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5811
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-53289998-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53289998
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289998
    reference: chr 3
allele count: 24
allele frequency: 2.703859759807125e-4
allele num: 88762
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.-40T>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.-40T>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.-40T>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.-40T>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.71T>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-140T>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.-40T>G
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22176
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11084
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8212
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12438
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1687
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 9.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 4744
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5844
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

3-53290001-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53290001
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53290001
    reference: chr 3
allele count: 1
allele frequency: 1.169071056138792e-5
allele num: 85538
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.-43C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.-43C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.-43C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.-43C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-143C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.68C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.-43C>G
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13799
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11633
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20923
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2363
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4329
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1925
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

3-53290003-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53290003
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53290003
    reference: chr 3
allele count: 1
allele frequency: 1.184413123297406e-5
allele num: 84430
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.-45A>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-145A>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417312
  ensembl transcript: ENST00000472528
  gene symbol: TKT
  hgvsc: ENST00000472528.1:c.-45A>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.-45A>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.-45A>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.-45A>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.66A>G
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20513
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11548
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2010
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7924
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3411
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4337
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD

3-53290004-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53290004
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53290004
    reference: chr 3
allele count: 1
allele frequency: 1.182172833668282e-5
allele num: 84590
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.-46T>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.65T>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.-46T>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-146T>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.-46T>C
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.-46T>C
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: 5' UTR
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 11516
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8056
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5290
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7918
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17366
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3240
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ

3-53290004-AGCGGCTGCTCCCGCGGCGACAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53290004
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53289982
    reference: chr 3
allele count: 1
allele frequency: 1.182172833668282e-5
allele num: 84590
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: 5' UTR
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11516
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20496
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8056
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4353
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5848
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7918
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5290
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3240
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17366
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: AGCGGCTGCTCCCGCGGCGACAG
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

3-53290006-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53290006
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53290006
    reference: chr 3
allele count: 5
allele frequency: 6.247813265357125e-5
allele num: 80028
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.-48G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.63G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.-48G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-148G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.-48G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.-48G>A
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19614
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15307
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5786
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5369
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3029
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4241
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3055
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7810
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5638
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD

3-53290007-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53290007
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53290007
    reference: chr 3
allele count: 2
allele frequency: 2.480466327669602e-5
allele num: 80630
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.-49C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.-49C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.-49C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.-49C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-149C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.62C>T
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19649
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5647
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4260
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2175
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5447
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3023
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14783
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD

3-53290007-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53290007
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53290007
    reference: chr 3
allele count: 1
allele frequency: 1.240233163834801e-5
allele num: 80630
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.-49C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.-49C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.62C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.-49C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.-49C>G
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-149C>G
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19649
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3023
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14783
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5404
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4260
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3837
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5647
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7892
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

3-53290008-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53290008
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53290008
    reference: chr 3
allele count: 1
allele frequency: 1.257766709430735e-5
allele num: 79506
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-150C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.-50C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.-50C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.-50C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.-50C>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.61C>T
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19545
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1958
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3041
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13919
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2181
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3065
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7874
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-53290009-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53290009
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53290009
    reference: chr 3
allele count: 21
allele frequency: 2.635872976026108e-4
allele num: 79670
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.-51G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.-51G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.60G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.-51G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-151G>T
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.-51G>T
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7743
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15501
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11197
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19568
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5413
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7904
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3407
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1955
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 9.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 2176
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3063
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

3-53290009-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53290009
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53290009
    reference: chr 3
allele count: 8
allele frequency: 1.004142086105184e-4
allele num: 79670
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000391481
  ensembl transcript: ENST00000423516
  gene symbol: TKT
  hgvsc: ENST00000423516.1:c.-51G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000296289
  ensembl transcript: ENST00000296289
  gene symbol: TKT
  hgvsc: ENST00000296289.6:c.-151G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163931
  ensembl transcript: ENST00000483706
  gene symbol: TKT
  hgvsc: ENST00000483706.1:n.60G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000417773
  ensembl transcript: ENST00000462138
  gene symbol: TKT
  hgvsc: ENST00000462138.1:c.-51G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000405455
  ensembl transcript: ENST00000423525
  gene symbol: TKT
  hgvsc: ENST00000423525.2:c.-51G>A
  variant of: http://identifiers.org/hgnc/11834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163931
  ensembl protein: ENSP00000413503
  ensembl transcript: ENST00000450814
  gene symbol: TKT
  hgvsc: ENST00000450814.2:c.-51G>A
  variant of: http://identifiers.org/hgnc/11834
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7743
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11197
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19568
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3008
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2176
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3407
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3063
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5606
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4244
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14063
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-53321550-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53321550
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53321550
    reference: chr 3
allele count: 1
allele frequency: 8.292699107705576e-6
allele num: 120588
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476219
  ensembl transcript: ENST00000606822
  gene symbol: DCP1A
  hgvsc: ENST00000606822.1:c.*48T>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000475920
  ensembl transcript: ENST00000607628
  gene symbol: DCP1A
  hgvsc: ENST00000607628.1:c.*48T>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476046
  ensembl transcript: ENST00000294241
  gene symbol: DCP1A
  hgvsc: ENST00000294241.6:c.*48T>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000558034
  gene symbol: DCP1A
  hgvsc: ENST00000558034.1:n.426T>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000494659
  gene symbol: DCP1A
  hgvsc: ENST00000494659.2:n.1697T>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000480258
  gene symbol: DCP1A
  hgvsc: ENST00000480258.1:n.1896T>G
  variant of: http://identifiers.org/hgnc/18714
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7268
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6027
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2926
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38413
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2996
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

3-53321550-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53321550
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53321550
    reference: chr 3
allele count: 2
allele frequency: 1.658539821541115e-5
allele num: 120588
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000494659
  gene symbol: DCP1A
  hgvsc: ENST00000494659.2:n.1697T>C
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000558034
  gene symbol: DCP1A
  hgvsc: ENST00000558034.1:n.426T>C
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476046
  ensembl transcript: ENST00000294241
  gene symbol: DCP1A
  hgvsc: ENST00000294241.6:c.*48T>C
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000480258
  gene symbol: DCP1A
  hgvsc: ENST00000480258.1:n.1896T>C
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476219
  ensembl transcript: ENST00000606822
  gene symbol: DCP1A
  hgvsc: ENST00000606822.1:c.*48T>C
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000475920
  ensembl transcript: ENST00000607628
  gene symbol: DCP1A
  hgvsc: ENST00000607628.1:c.*48T>C
  variant of: http://identifiers.org/hgnc/18714
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7326
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6027
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4852
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2996
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2926
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

http://identifiers.org/exac.variant/3-53321556-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53321556
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53321556
    reference: chr 3
allele count: 6
allele frequency: 4.975536943361804e-5
allele num: 120590
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476046
  ensembl transcript: ENST00000294241
  gene symbol: DCP1A
  hgvsc: ENST00000294241.6:c.*42G>T
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000494659
  gene symbol: DCP1A
  hgvsc: ENST00000494659.2:n.1691G>T
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000558034
  gene symbol: DCP1A
  hgvsc: ENST00000558034.1:n.420G>T
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476219
  ensembl transcript: ENST00000606822
  gene symbol: DCP1A
  hgvsc: ENST00000606822.1:c.*42G>T
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000475920
  ensembl transcript: ENST00000607628
  gene symbol: DCP1A
  hgvsc: ENST00000607628.1:c.*42G>T
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000480258
  gene symbol: DCP1A
  hgvsc: ENST00000480258.1:n.1890G>T
  variant of: http://identifiers.org/hgnc/18714
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6032
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7053
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3963
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2982
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

3-53321563-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53321563
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53321563
    reference: chr 3
allele count: 1
allele frequency: 8.288025460814215e-6
allele num: 120656
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476219
  ensembl transcript: ENST00000606822
  gene symbol: DCP1A
  hgvsc: ENST00000606822.1:c.*35C>T
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000558034
  gene symbol: DCP1A
  hgvsc: ENST00000558034.1:n.413C>T
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000494659
  gene symbol: DCP1A
  hgvsc: ENST00000494659.2:n.1684C>T
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476046
  ensembl transcript: ENST00000294241
  gene symbol: DCP1A
  hgvsc: ENST00000294241.6:c.*35C>T
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000475920
  ensembl transcript: ENST00000607628
  gene symbol: DCP1A
  hgvsc: ENST00000607628.1:c.*35C>T
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000480258
  gene symbol: DCP1A
  hgvsc: ENST00000480258.1:n.1883C>T
  variant of: http://identifiers.org/hgnc/18714
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7066
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2929
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3009
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1875
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

3-53321565-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53321565
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53321565
    reference: chr 3
allele count: 2
allele frequency: 1.657302905251993e-5
allele num: 120678
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476046
  ensembl transcript: ENST00000294241
  gene symbol: DCP1A
  hgvsc: ENST00000294241.6:c.*33A>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000480258
  gene symbol: DCP1A
  hgvsc: ENST00000480258.1:n.1881A>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000475920
  ensembl transcript: ENST00000607628
  gene symbol: DCP1A
  hgvsc: ENST00000607628.1:c.*33A>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476219
  ensembl transcript: ENST00000606822
  gene symbol: DCP1A
  hgvsc: ENST00000606822.1:c.*33A>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000494659
  gene symbol: DCP1A
  hgvsc: ENST00000494659.2:n.1682A>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000558034
  gene symbol: DCP1A
  hgvsc: ENST00000558034.1:n.411A>G
  variant of: http://identifiers.org/hgnc/18714
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7348
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7073
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5736
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38447
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

3-53321567-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53321567
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53321567
    reference: chr 3
allele count: 1
allele frequency: 8.286102548805144e-6
allele num: 120684
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000558034
  gene symbol: DCP1A
  hgvsc: ENST00000558034.1:n.409C>T
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476219
  ensembl transcript: ENST00000606822
  gene symbol: DCP1A
  hgvsc: ENST00000606822.1:c.*31C>T
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476046
  ensembl transcript: ENST00000294241
  gene symbol: DCP1A
  hgvsc: ENST00000294241.6:c.*31C>T
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000475920
  ensembl transcript: ENST00000607628
  gene symbol: DCP1A
  hgvsc: ENST00000607628.1:c.*31C>T
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000494659
  gene symbol: DCP1A
  hgvsc: ENST00000494659.2:n.1680C>T
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000480258
  gene symbol: DCP1A
  hgvsc: ENST00000480258.1:n.1879C>T
  variant of: http://identifiers.org/hgnc/18714
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7075
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7357
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1825
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1873
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2970
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum

3-53321567-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53321567
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53321567
    reference: chr 3
allele count: 1
allele frequency: 8.286102548805144e-6
allele num: 120684
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000475920
  ensembl transcript: ENST00000607628
  gene symbol: DCP1A
  hgvsc: ENST00000607628.1:c.*31C>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476219
  ensembl transcript: ENST00000606822
  gene symbol: DCP1A
  hgvsc: ENST00000606822.1:c.*31C>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000480258
  gene symbol: DCP1A
  hgvsc: ENST00000480258.1:n.1879C>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000494659
  gene symbol: DCP1A
  hgvsc: ENST00000494659.2:n.1680C>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000558034
  gene symbol: DCP1A
  hgvsc: ENST00000558034.1:n.409C>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476046
  ensembl transcript: ENST00000294241
  gene symbol: DCP1A
  hgvsc: ENST00000294241.6:c.*31C>G
  variant of: http://identifiers.org/hgnc/18714
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7075
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1873
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1825
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2942
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3110
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38450
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

3-53321570-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53321570
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53321570
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 120680
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000558034
  gene symbol: DCP1A
  hgvsc: ENST00000558034.1:n.406G>C
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476219
  ensembl transcript: ENST00000606822
  gene symbol: DCP1A
  hgvsc: ENST00000606822.1:c.*28G>C
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000475920
  ensembl transcript: ENST00000607628
  gene symbol: DCP1A
  hgvsc: ENST00000607628.1:c.*28G>C
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000480258
  gene symbol: DCP1A
  hgvsc: ENST00000480258.1:n.1876G>C
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000494659
  gene symbol: DCP1A
  hgvsc: ENST00000494659.2:n.1677G>C
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476046
  ensembl transcript: ENST00000294241
  gene symbol: DCP1A
  hgvsc: ENST00000294241.6:c.*28G>C
  variant of: http://identifiers.org/hgnc/18714
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 3963
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6047
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7517
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7082
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2984
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1882
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2940
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3102
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

3-53321570-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53321570
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53321570
    reference: chr 3
allele count: 1
allele frequency: 8.286377195889957e-6
allele num: 120680
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476046
  ensembl transcript: ENST00000294241
  gene symbol: DCP1A
  hgvsc: ENST00000294241.6:c.*28G>A
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000494659
  gene symbol: DCP1A
  hgvsc: ENST00000494659.2:n.1677G>A
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476219
  ensembl transcript: ENST00000606822
  gene symbol: DCP1A
  hgvsc: ENST00000606822.1:c.*28G>A
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000475920
  ensembl transcript: ENST00000607628
  gene symbol: DCP1A
  hgvsc: ENST00000607628.1:c.*28G>A
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000558034
  gene symbol: DCP1A
  hgvsc: ENST00000558034.1:n.406G>A
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000480258
  gene symbol: DCP1A
  hgvsc: ENST00000480258.1:n.1876G>A
  variant of: http://identifiers.org/hgnc/18714
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3963
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7082
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7517
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6047
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38449
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2940
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2984
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3102
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

3-53321575-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53321575
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53321575
    reference: chr 3
allele count: 1
allele frequency: 8.284180528862085e-6
allele num: 120712
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476046
  ensembl transcript: ENST00000294241
  gene symbol: DCP1A
  hgvsc: ENST00000294241.6:c.*23G>C
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476219
  ensembl transcript: ENST00000606822
  gene symbol: DCP1A
  hgvsc: ENST00000606822.1:c.*23G>C
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000558034
  gene symbol: DCP1A
  hgvsc: ENST00000558034.1:n.401G>C
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000480258
  gene symbol: DCP1A
  hgvsc: ENST00000480258.1:n.1871G>C
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000475920
  ensembl transcript: ENST00000607628
  gene symbol: DCP1A
  hgvsc: ENST00000607628.1:c.*23G>C
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000494659
  gene symbol: DCP1A
  hgvsc: ENST00000494659.2:n.1672G>C
  variant of: http://identifiers.org/hgnc/18714
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7093
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3963
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7374
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3110
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38480
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ

3-53321581-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53321581
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53321581
    reference: chr 3
allele count: 1
allele frequency: 8.283219853221344e-6
allele num: 120726
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476219
  ensembl transcript: ENST00000606822
  gene symbol: DCP1A
  hgvsc: ENST00000606822.1:c.*17C>T
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000494659
  gene symbol: DCP1A
  hgvsc: ENST00000494659.2:n.1666C>T
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000558034
  gene symbol: DCP1A
  hgvsc: ENST00000558034.1:n.395C>T
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000480258
  gene symbol: DCP1A
  hgvsc: ENST00000480258.1:n.1865C>T
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476046
  ensembl transcript: ENST00000294241
  gene symbol: DCP1A
  hgvsc: ENST00000294241.6:c.*17C>T
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000475920
  ensembl transcript: ENST00000607628
  gene symbol: DCP1A
  hgvsc: ENST00000607628.1:c.*17C>T
  variant of: http://identifiers.org/hgnc/18714
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3963
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3014
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2955
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3122
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38492
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

3-53321587-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53321587
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53321587
    reference: chr 3
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476046
  ensembl transcript: ENST00000294241
  gene symbol: DCP1A
  hgvsc: ENST00000294241.6:c.*11A>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000475920
  ensembl transcript: ENST00000607628
  gene symbol: DCP1A
  hgvsc: ENST00000607628.1:c.*11A>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476219
  ensembl transcript: ENST00000606822
  gene symbol: DCP1A
  hgvsc: ENST00000606822.1:c.*11A>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000494659
  gene symbol: DCP1A
  hgvsc: ENST00000494659.2:n.1660A>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000558034
  gene symbol: DCP1A
  hgvsc: ENST00000558034.1:n.389A>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000480258
  gene symbol: DCP1A
  hgvsc: ENST00000480258.1:n.1859A>G
  variant of: http://identifiers.org/hgnc/18714
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7559
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3073
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5879
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3014
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38493
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1903
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

3-53321594-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53321594
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53321594
    reference: chr 3
allele count: 1
allele frequency: 8.282122210995345e-6
allele num: 120742
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000494659
  gene symbol: DCP1A
  hgvsc: ENST00000494659.2:n.1653G>A
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476219
  ensembl transcript: ENST00000606822
  gene symbol: DCP1A
  hgvsc: ENST00000606822.1:c.*4G>A
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000475920
  ensembl transcript: ENST00000607628
  gene symbol: DCP1A
  hgvsc: ENST00000607628.1:c.*4G>A
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000480258
  gene symbol: DCP1A
  hgvsc: ENST00000480258.1:n.1852G>A
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476046
  ensembl transcript: ENST00000294241
  gene symbol: DCP1A
  hgvsc: ENST00000294241.6:c.*4G>A
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000558034
  gene symbol: DCP1A
  hgvsc: ENST00000558034.1:n.382G>A
  variant of: http://identifiers.org/hgnc/18714
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3961
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38500
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5883
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3131
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3078
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

3-53321596-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53321596
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53321596
    reference: chr 3
allele count: 19
allele frequency: 1.573551090719361e-4
allele num: 120746
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000494659
  gene symbol: DCP1A
  hgvsc: ENST00000494659.2:n.1651T>C
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476219
  ensembl transcript: ENST00000606822
  gene symbol: DCP1A
  hgvsc: ENST00000606822.1:c.*2T>C
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000558034
  gene symbol: DCP1A
  hgvsc: ENST00000558034.1:n.380T>C
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476046
  ensembl transcript: ENST00000294241
  gene symbol: DCP1A
  hgvsc: ENST00000294241.6:c.*2T>C
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000475920
  ensembl transcript: ENST00000607628
  gene symbol: DCP1A
  hgvsc: ENST00000607628.1:c.*2T>C
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000480258
  gene symbol: DCP1A
  hgvsc: ENST00000480258.1:n.1850T>C
  variant of: http://identifiers.org/hgnc/18714
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6355
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3887
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6052
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7569
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3131
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1903
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3078
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38511
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

3-53321600-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53321600
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53321600
    reference: chr 3
allele count: 1
allele frequency: 8.281710670156027e-6
allele num: 120748
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476046
  ensembl transcript: ENST00000294241
  gene symbol: DCP1A
  hgvsc: ENST00000294241.6:c.1747T>C
  hgvsp: ENSP00000476046.1:p.Ter583ArgextTer24
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: true
  consequence: stop_lost
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000475920
  ensembl transcript: ENST00000607628
  gene symbol: DCP1A
  hgvsc: ENST00000607628.1:c.1753T>C
  hgvsp: ENSP00000475920.1:p.Ter585ArgextTer24
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000494659
  gene symbol: DCP1A
  hgvsc: ENST00000494659.2:n.1647T>C
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000558034
  gene symbol: DCP1A
  hgvsc: ENST00000558034.1:n.376T>C
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476219
  ensembl transcript: ENST00000606822
  gene symbol: DCP1A
  hgvsc: ENST00000606822.1:c.1639T>C
  hgvsp: ENSP00000476219.1:p.Ter547ArgextTer24
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000480258
  gene symbol: DCP1A
  hgvsc: ENST00000480258.1:n.1846T>C
  variant of: http://identifiers.org/hgnc/18714
canonical: true
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7109
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3134
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3077
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1904
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ter585ArgextTer24
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

3-53321601-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53321601
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53321601
    reference: chr 3
allele count: 1
allele frequency: 8.281573498964803e-6
allele num: 120750
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000558034
  gene symbol: DCP1A
  hgvsc: ENST00000558034.1:n.375A>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476219
  ensembl transcript: ENST00000606822
  gene symbol: DCP1A
  hgvsc: ENST00000606822.1:c.1638A>G
  hgvsp: ENST00000606822.1:c.1638A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476046
  ensembl transcript: ENST00000294241
  gene symbol: DCP1A
  hgvsc: ENST00000294241.6:c.1746A>G
  hgvsp: ENST00000294241.6:c.1746A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000480258
  gene symbol: DCP1A
  hgvsc: ENST00000480258.1:n.1845A>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000475920
  ensembl transcript: ENST00000607628
  gene symbol: DCP1A
  hgvsc: ENST00000607628.1:c.1752A>G
  hgvsp: ENST00000607628.1:c.1752A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000494659
  gene symbol: DCP1A
  hgvsc: ENST00000494659.2:n.1646A>G
  variant of: http://identifiers.org/hgnc/18714
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38502
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3078
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5894
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu584Leu
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

3-53321613-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53321613
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53321613
    reference: chr 3
allele count: 3
allele frequency: 2.484348603796085e-5
allele num: 120756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476219
  ensembl transcript: ENST00000606822
  gene symbol: DCP1A
  hgvsc: ENST00000606822.1:c.1626C>T
  hgvsp: ENST00000606822.1:c.1626C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000480258
  gene symbol: DCP1A
  hgvsc: ENST00000480258.1:n.1833C>T
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000558034
  gene symbol: DCP1A
  hgvsc: ENST00000558034.1:n.363C>T
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000494659
  gene symbol: DCP1A
  hgvsc: ENST00000494659.2:n.1634C>T
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000475920
  ensembl transcript: ENST00000607628
  gene symbol: DCP1A
  hgvsc: ENST00000607628.1:c.1740C>T
  hgvsp: ENST00000607628.1:c.1740C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476046
  ensembl transcript: ENST00000294241
  gene symbol: DCP1A
  hgvsc: ENST00000294241.6:c.1734C>T
  hgvsp: ENST00000294241.6:c.1734C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18714
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7578
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38505
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp580Asp
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

3-53321623-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53321623
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53321623
    reference: chr 3
allele count: 1
allele frequency: 8.281024859636628e-6
allele num: 120758
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000494659
  gene symbol: DCP1A
  hgvsc: ENST00000494659.2:n.1624A>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476219
  ensembl transcript: ENST00000606822
  gene symbol: DCP1A
  hgvsc: ENST00000606822.1:c.1616A>G
  hgvsp: ENSP00000476219.1:p.Lys539Arg
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476046
  ensembl transcript: ENST00000294241
  gene symbol: DCP1A
  hgvsc: ENST00000294241.6:c.1724A>G
  hgvsp: ENSP00000476046.1:p.Lys575Arg
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000558034
  gene symbol: DCP1A
  hgvsc: ENST00000558034.1:n.353A>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000480258
  gene symbol: DCP1A
  hgvsc: ENST00000480258.1:n.1823A>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000475920
  ensembl transcript: ENST00000607628
  gene symbol: DCP1A
  hgvsc: ENST00000607628.1:c.1730A>G
  hgvsp: ENSP00000475920.1:p.Lys577Arg
  variant of: http://identifiers.org/hgnc/18714
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6371
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3881
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3025
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3079
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3139
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38504
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys577Arg
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD

3-53321626-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53321626
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 53321626
    reference: chr 3
allele count: 1
allele frequency: 8.281024859636628e-6
allele num: 120758
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000494659
  gene symbol: DCP1A
  hgvsc: ENST00000494659.2:n.1621C>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476046
  ensembl transcript: ENST00000294241
  gene symbol: DCP1A
  hgvsc: ENST00000294241.6:c.1721C>G
  hgvsp: ENSP00000476046.1:p.Thr574Ser
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000476219
  ensembl transcript: ENST00000606822
  gene symbol: DCP1A
  hgvsc: ENST00000606822.1:c.1613C>G
  hgvsp: ENSP00000476219.1:p.Thr538Ser
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000558034
  gene symbol: DCP1A
  hgvsc: ENST00000558034.1:n.350C>G
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162290
  ensembl protein: ENSP00000475920
  ensembl transcript: ENST00000607628
  gene symbol: DCP1A
  hgvsc: ENST00000607628.1:c.1727C>G
  hgvsp: ENSP00000475920.1:p.Thr576Ser
  variant of: http://identifiers.org/hgnc/18714
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162290
  ensembl transcript: ENST00000480258
  gene symbol: DCP1A
  hgvsc: ENST00000480258.1:n.1820C>G
  variant of: http://identifiers.org/hgnc/18714
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr576Ser
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 1003
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1761
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 856
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 513
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.807411566535654e-4
allele num: 3562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.519e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.49e-2

DP
type: SiteQuality
SIO_000300: 1.68306e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.32e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.442e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-1

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 842
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2328
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.810567734682406e-4
allele num: 3558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7586
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.792114695340502e-3
allele num: 558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.64e-1

FS
type: SiteQuality
SIO_000300: 1.924e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.23e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

QD
type: SiteQuality
SIO_000300: 9.57e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.74e-1

DP
type: SiteQuality
SIO_000300: 1.70299e5

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2070
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 175
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3564
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.632271650434325e-4
allele num: 7598
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.53e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.74704e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.621e0

QD
type: SiteQuality
SIO_000300: 1.638e1

VQSLOD
type: SiteQuality
SIO_000300: -5.885e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 140
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 8.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.807411566535654e-4
allele num: 3562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

QD
type: SiteQuality
SIO_000300: 8.050000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.75062e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.77e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.28e-1

GenotypeQuality
all individuals: 138
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.77623542476402e-4
allele num: 3602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.626050420168067e-4
allele num: 7616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.05e0

FS
type: SiteQuality
SIO_000300: 2.039e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.73e-2

QD
type: SiteQuality
SIO_000300: 8.869999999999999e0

DP
type: SiteQuality
SIO_000300: 1.77202e5

ClippingRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 5.893e1

GenotypeQuality
all individuals: 144
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
all individuals: 310
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2849
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 228
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GenotypeQuality
all individuals: 2883
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.313025210084034e-4
allele num: 7616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.111728738187882e-3
allele num: 3598
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.77723e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.73e-1

FS
type: SiteQuality
SIO_000300: 2.242e0

QD
type: SiteQuality
SIO_000300: 1.214e1

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

GenotypeQuality
all individuals: 69
bin: 1.75e1
variant carriers: 34

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 162
bin: 2.25e1
variant carriers: 20

GenotypeQuality
all individuals: 309
bin: 7.75e1
variant carriers: 11

GenotypeQuality
all individuals: 57
bin: 2.75e1
variant carriers: 21

GenotypeQuality
all individuals: 91
bin: 8.75e1
variant carriers: 11

GenotypeQuality
all individuals: 2164
bin: 6.25e1
variant carriers: 11

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2178
bin: 9.75e1
variant carriers: 1987

GenotypeQuality
all individuals: 210
bin: 8.25e1
variant carriers: 11

GenotypeQuality
all individuals: 633
bin: 6.75e1
variant carriers: 14

GenotypeQuality
all individuals: 244
bin: 7.25e1
variant carriers: 6

GenotypeQuality
all individuals: 121
bin: 9.25e1
variant carriers: 10

Latino
type: Population
allele count: 29
allele frequency: 1.559139784946237e-1
allele num: 186
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.5e-1
allele num: 4
num of homozygotes: 0

East Asian
type: Population
allele count: 14
allele frequency: 7.000000000000001e-2
allele num: 200
num of homozygotes: 1

African
type: Population
allele count: 210
allele frequency: 3.804347826086957e-1
allele num: 552
num of homozygotes: 34

South Asian
type: Population
allele count: 1452
allele frequency: 1.908517350157729e-1
allele num: 7608
num of homozygotes: 156

European (Non-Finnish)
type: Population
allele count: 572
allele frequency: 1.593314763231198e-1
allele num: 3590
num of homozygotes: 48

Other
type: Population
allele count: 18
allele frequency: 1.384615384615385e-1
allele num: 130
num of homozygotes: 1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.14e-1

QD
type: SiteQuality
SIO_000300: 1.416e1

FS
type: SiteQuality
SIO_000300: 1.963e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.27e0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

DP
type: SiteQuality
SIO_000300: 2.22766e5

BaseQRankSum
type: SiteQuality
SIO_000300: -5.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
all individuals: 307
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 741
bin: 2.5e0
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GenotypeQuality
all individuals: 442
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variant carriers: 0

GenotypeQuality
all individuals: 258
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variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 2796
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GenotypeQuality
all individuals: 33
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GenotypeQuality
all individuals: 92
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GenotypeQuality
all individuals: 878
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variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3562
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 5.050505050505051e-3
allele num: 198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.51e-1

QD
type: SiteQuality
SIO_000300: 1.133e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.62e-1

DP
type: SiteQuality
SIO_000300: 1.80367e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQRankSum
type: SiteQuality
SIO_000300: -7.69e-1

GenotypeQuality
all individuals: 2450
bin: 7.5e0
variant carriers: 18

GenotypeQuality
all individuals: 679
bin: 9.75e1
variant carriers: 393

GenotypeQuality
all individuals: 275
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variant carriers: 3

GenotypeQuality
all individuals: 110
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variant carriers: 3

GenotypeQuality
all individuals: 97
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variant carriers: 4

GenotypeQuality
all individuals: 165
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GenotypeQuality
all individuals: 164
bin: 2.75e1
variant carriers: 5

GenotypeQuality
all individuals: 204
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variant carriers: 0

GenotypeQuality
all individuals: 2069
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 100
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 746
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 270
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 402
bin: 7.75e1
variant carriers: 2

Other
type: Population
allele count: 2
allele frequency: 1.515151515151515e-2
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 220
allele frequency: 2.900079093066174e-2
allele num: 7586
num of homozygotes: 2

East Asian
type: Population
allele count: 7
allele frequency: 3.535353535353535e-2
allele num: 198
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 3.102189781021898e-2
allele num: 548
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 2.173913043478261e-2
allele num: 184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 159
allele frequency: 4.486455981941309e-2
allele num: 3544
num of homozygotes: 6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.281e0

QD
type: SiteQuality
SIO_000300: 1.207e1

DP
type: SiteQuality
SIO_000300: 1.75783e5

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.74e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.7e0

FS
type: SiteQuality
SIO_000300: 2.57e0

MQRankSum
type: SiteQuality
SIO_000300: 2.35e-1

GenotypeQuality
all individuals: 110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 164
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 165
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 301
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 9.25e1
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GenotypeQuality
all individuals: 402
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 5.434782608695652e-3
allele num: 184
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 1.845504877405747e-3
allele num: 7586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.975169300225734e-3
allele num: 3544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.35e-1

FS
type: SiteQuality
SIO_000300: 2.57e0

QD
type: SiteQuality
SIO_000300: 1.207e1

VQSLOD
type: SiteQuality
SIO_000300: 2.7e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.74e-2

DP
type: SiteQuality
SIO_000300: 1.75783e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.281e0

GenotypeQuality
all individuals: 107
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1129
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GenotypeQuality
all individuals: 180
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
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GenotypeQuality
all individuals: 300
bin: 3.25e1
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GenotypeQuality
all individuals: 193
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GenotypeQuality
all individuals: 141
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GenotypeQuality
all individuals: 115
bin: 8.75e1
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GenotypeQuality
all individuals: 291
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GenotypeQuality
all individuals: 297
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variant carriers: 17

GenotypeQuality
all individuals: 86
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GenotypeQuality
all individuals: 267
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3540
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.020408163265306e-2
allele num: 196
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 1.515151515151515e-2
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 3.225806451612903e-2
allele num: 186
num of homozygotes: 1

African
type: Population
allele count: 1
allele frequency: 1.824817518248175e-3
allele num: 548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 9.225092250922509e-4
allele num: 7588
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.02e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.286e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.72187e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.39e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.67e0

QD
type: SiteQuality
SIO_000300: 1.387e1

GenotypeQuality
all individuals: 257
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
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variant carriers: 0

GenotypeQuality
all individuals: 1486
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2415
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 8.75e1
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GenotypeQuality
all individuals: 422
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.18e0

VQSLOD
type: SiteQuality
SIO_000300: 7.64e-1

DP
type: SiteQuality
SIO_000300: 1.6884e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.76e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.256281407035176e-3
allele num: 796
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3070
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.389999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
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MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
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DP
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ClippingRankSum
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SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
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SIO_000300: 2.75e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3142
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5140
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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VQSLOD
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.08e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 2.31301e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3580
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.24e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.314e-1

DP
type: SiteQuality
SIO_000300: 2.87165e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.27e-1

QD
type: SiteQuality
SIO_000300: 1.091e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

GenotypeQuality
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variant carriers: 12

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 107

GenotypeQuality
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bin: 9.25e1
variant carriers: 7

Latino
type: Population
allele count: 3
allele frequency: 9.803921568627451e-3
allele num: 306
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.510117789187557e-4
allele num: 6622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.395604395604396e-4
allele num: 4550
num of homozygotes: 0

African
type: Population
allele count: 81
allele frequency: 7.818532818532818e-2
allele num: 1036
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.83e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.79e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 1.53e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

DP
type: SiteQuality
SIO_000300: 3.58233e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1268
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.550868486352357e-4
allele num: 6448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 1.436e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQ
type: SiteQuality
SIO_000300: 5.843e1

VQSLOD
type: SiteQuality
SIO_000300: -1.916e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.52e-1

FS
type: SiteQuality
SIO_000300: 2.412e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.81e-2

DP
type: SiteQuality
SIO_000300: 4.4207e5

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.30582397492818e-4
allele num: 7658
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.388888888888889e-4
allele num: 7200
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 590
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 1362
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.043e1

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.14e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

African
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allele count: 0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2036
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1968
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 5.534646889528448e-5
allele num: 18068
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1188
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 4.459109961651654e-5
allele num: 22426
num of homozygotes: 0

BaseQRankSum
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MQ
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FS
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QD
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VQSLOD
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.093663009661045e-5
allele num: 24428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9690
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1510
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.262e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.21e-1

QD
type: SiteQuality
SIO_000300: 8.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

DP
type: SiteQuality
SIO_000300: 7.08397e5

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 405
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.646973012399708e-4
allele num: 2742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1510
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.031991744066047e-4
allele num: 9690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24428
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.08397e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.262e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

QD
type: SiteQuality
SIO_000300: 8.18e0

GenotypeQuality
all individuals: 276
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 684
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.183495749533486e-5
allele num: 57876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4938
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10432
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14762
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.194108e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.12e-1

FS
type: SiteQuality
SIO_000300: 2.827e0

MQRankSum
type: SiteQuality
SIO_000300: -1.426e0

VQSLOD
type: SiteQuality
SIO_000300: -9.487e-1

MQ
type: SiteQuality
SIO_000300: 5.872e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

QD
type: SiteQuality
SIO_000300: 1.082e1

GenotypeQuality
all individuals: 466
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 243
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GenotypeQuality
all individuals: 705
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.342301943198804e-5
allele num: 10704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15068
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8012
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.013e0

MQ
type: SiteQuality
SIO_000300: 5.569e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

QD
type: SiteQuality
SIO_000300: 2.89e0

MQRankSum
type: SiteQuality
SIO_000300: 7.55e-1

DP
type: SiteQuality
SIO_000300: 1.225874e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.162e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.07e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 570
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 80
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variant carriers: 2

GenotypeQuality
all individuals: 46213
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8990
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.28223980043982e-5
allele num: 60934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.59e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

DP
type: SiteQuality
SIO_000300: 1.2478e6

VQSLOD
type: SiteQuality
SIO_000300: 5.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.098e1

FS
type: SiteQuality
SIO_000300: 4.312e0

GenotypeQuality
all individuals: 77
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 645
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GenotypeQuality
all individuals: 4071
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8216
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15446
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.094091903719913e-4
allele num: 9140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5476
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.172e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.129e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.260127e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.07e-1

FS
type: SiteQuality
SIO_000300: 1.364e0

MQ
type: SiteQuality
SIO_000300: 5.847e1

QD
type: SiteQuality
SIO_000300: 8.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10930
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.615717701803141e-5
allele num: 61892
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

FS
type: SiteQuality
SIO_000300: 6.94e-1

DP
type: SiteQuality
SIO_000300: 1.263895e6

VQSLOD
type: SiteQuality
SIO_000300: 6.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.16e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 228
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GenotypeQuality
all individuals: 80
bin: 9.75e1
variant carriers: 4

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.491398896462187e-5
allele num: 61620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.249949e6

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

FS
type: SiteQuality
SIO_000300: 9.52e-1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 220
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variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.62311313098523e-5
allele num: 61610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.84e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.84e-1

FS
type: SiteQuality
SIO_000300: 1.651e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.44e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.249317e6

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10772
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9014
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.27890353465801e-5
allele num: 60996
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8050
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.031e0

FS
type: SiteQuality
SIO_000300: 8.52e-1

InbreedingCoeff
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SIO_000300: -2.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.29e-1

ReadPosRankSum
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SIO_000300: -1.112e0

QD
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SIO_000300: 9.699999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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SIO_000300: -2.172e-1

DP
type: SiteQuality
SIO_000300: 1.230908e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7992
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.315869752636116e-5
allele num: 60316
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.382e0

MQRankSum
type: SiteQuality
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DP
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MQ
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ReadPosRankSum
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SIO_000300: -8.0e-1

InbreedingCoeff
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SIO_000300: -2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.123e0

QD
type: SiteQuality
SIO_000300: 1.453e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7374
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.525471531817381e-5
allele num: 56730
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14552
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8366
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VQSLOD
type: SiteQuality
SIO_000300: -1.662e-1

FS
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.95e-1

InbreedingCoeff
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SIO_000300: -2.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.53e-1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.064657e6

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4404
num of homozygotes: 0

Latino
type: Population
allele count: 19
allele frequency: 2.041693531055233e-3
allele num: 9306
num of homozygotes: 0

African
type: Population
allele count: 323
allele frequency: 4.060849886849384e-2
allele num: 7954
num of homozygotes: 5

Other
type: Population
allele count: 1
allele frequency: 1.400560224089636e-3
allele num: 714
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South Asian
type: Population
allele count: 1
allele frequency: 7.046223224351747e-5
allele num: 14192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6982
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 2.217540747311232e-4
allele num: 54114
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.225e1

FS
type: SiteQuality
SIO_000300: 2.779e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.827e0

DP
type: SiteQuality
SIO_000300: 9.54279e5

VQSLOD
type: SiteQuality
SIO_000300: -3.631e0

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7744
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East Asian
type: Population
allele count: 1
allele frequency: 1.45985401459854e-4
allele num: 6850
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

QD
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ClippingRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.255e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 7596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9102
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South Asian
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allele count: 1
allele frequency: 7.104290991759022e-5
allele num: 14076
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.774724445115507e-5
allele num: 52984
num of homozygotes: 0

East Asian
type: Population
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
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FS
type: SiteQuality
SIO_000300: 4.683e0

MQRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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SIO_000300: -3.1e-1

ReadPosRankSum
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QD
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DP
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MQ
type: SiteQuality
SIO_000300: 5.911e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 7.165376898824878e-5
allele num: 13956
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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QD
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FS
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MQRankSum
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VQSLOD
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 7.8e-3

BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
type: Population
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Latino
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allele frequency: 1.115324559446799e-4
allele num: 8966
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

FS
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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MQ
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 3944
num of homozygotes: 0

African
type: Population
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 672
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
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South Asian
type: Population
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allele num: 13802
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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QD
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MQRankSum
type: SiteQuality
SIO_000300: -6.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

DP
type: SiteQuality
SIO_000300: 8.68784e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -9.17e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8734
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7284
num of homozygotes: 0

South Asian
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allele frequency: 7.284382284382284e-5
allele num: 13728
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 8.63253e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 3866
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 7.859472629386568e-5
allele num: 50894
num of homozygotes: 0

East Asian
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allele frequency: 1.562988433885589e-4
allele num: 6398
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.29e-1

MQ
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-2

DP
type: SiteQuality
SIO_000300: 8.58733e5

MQRankSum
type: SiteQuality
SIO_000300: -3.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 6398
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 7.288629737609329e-5
allele num: 13720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8684
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3866
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7264
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-2

DP
type: SiteQuality
SIO_000300: 8.58733e5

QD
type: SiteQuality
SIO_000300: 1.447e1

MQRankSum
type: SiteQuality
SIO_000300: -3.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 7052
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6128
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3694
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.015316404675534e-5
allele num: 49620
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.637e0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -9.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7012
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6124
num of homozygotes: 0

European (Non-Finnish)
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allele count: 19
allele frequency: 3.85098706879079e-4
allele num: 49338
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3668
num of homozygotes: 0

South Asian
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allele count: 5
allele frequency: 3.696037847427558e-4
allele num: 13528
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

MQRankSum
type: SiteQuality
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QD
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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MQ
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.08e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.107481559536354e-5
allele num: 47450
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5850
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3432
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

FS
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 13262
num of homozygotes: 0

Other
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allele frequency: 1.5625e-3
allele num: 640
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 6648
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3342
num of homozygotes: 0

FS
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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Latino
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allele frequency: 1.25281884239539e-4
allele num: 7982
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3352
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 6650
num of homozygotes: 0

VQSLOD
type: SiteQuality
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BaseQRankSum
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DP
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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QD
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ClippingRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 1.25281884239539e-4
allele num: 7982
num of homozygotes: 0

African
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South Asian
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num of homozygotes: 0

European (Finnish)
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Other
type: Population
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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DP
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ClippingRankSum
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FS
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MQRankSum
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BaseQRankSum
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MQ
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QD
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12904
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.125213790620218e-4
allele num: 44436
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.39e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

DP
type: SiteQuality
SIO_000300: 7.97052e5

FS
type: SiteQuality
SIO_000300: 3.321e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

QD
type: SiteQuality
SIO_000300: 1.388e1

GenotypeQuality
all individuals: 7892
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3011
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 226
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1737
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5404
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12986
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.472071910916327e-5
allele num: 44722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 7.96119e5

QD
type: SiteQuality
SIO_000300: 1.156e1

GenotypeQuality
all individuals: 5447
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2175
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.236035955458164e-5
allele num: 44722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3130
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12986
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.156e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.4e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 7.96119e5

GenotypeQuality
all individuals: 4211
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5607
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3351
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.26510827217541e-5
allele num: 44148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3032
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6116
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5322
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.37e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.222e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

QD
type: SiteQuality
SIO_000300: 1.076e1

MQ
type: SiteQuality
SIO_000300: 5.82e1

DP
type: SiteQuality
SIO_000300: 7.96952e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.954e0

GenotypeQuality
all individuals: 3008
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4244
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
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variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12900
num of homozygotes: 0

African
type: Population
allele count: 19
allele frequency: 3.100522193211488e-3
allele num: 6128
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.343363782912413e-4
allele num: 7444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3064
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.65016501650165e-3
allele num: 606
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.739e0

DP
type: SiteQuality
SIO_000300: 7.97167e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.46e-2

QD
type: SiteQuality
SIO_000300: 1.349e1

VQSLOD
type: SiteQuality
SIO_000300: 5.31e0

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 114
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1955
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
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variant carriers: 0

GenotypeQuality
all individuals: 5413
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7904
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.357588922074396e-4
allele num: 44196
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.343363782912413e-4
allele num: 7444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5332
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.631853785900783e-4
allele num: 6128
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3064
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.97167e5

VQSLOD
type: SiteQuality
SIO_000300: 5.31e0

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.46e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.349e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.739e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

GenotypeQuality
all individuals: 2960
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4852
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2896
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
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variant carriers: 0

GenotypeQuality
all individuals: 106
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variant carriers: 0

GenotypeQuality
all individuals: 232
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variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021033285685113e-4
allele num: 9794
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.292e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.45e0

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.469e1

VQSLOD
type: SiteQuality
SIO_000300: -5.099e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

DP
type: SiteQuality
SIO_000300: 3.072223e6

GenotypeQuality
all individuals: 1837
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38413
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 383
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GenotypeQuality
all individuals: 2896
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variant carriers: 0

GenotypeQuality
all individuals: 171
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variant carriers: 0

GenotypeQuality
all individuals: 1797
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.731601731601732e-4
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

QD
type: SiteQuality
SIO_000300: 1.469e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

DP
type: SiteQuality
SIO_000300: 3.072223e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.36e-1

FS
type: SiteQuality
SIO_000300: 9.292e0

VQSLOD
type: SiteQuality
SIO_000300: -5.099e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2912
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.000900090009001e-5
allele num: 66660
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.58e-1

DP
type: SiteQuality
SIO_000300: 3.075506e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 1.31e1

FS
type: SiteQuality
SIO_000300: 7.75e-1

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -7.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 53
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3095
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2961
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.12e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 1.131e1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.079605e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

GenotypeQuality
all individuals: 1870
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variant carriers: 0

GenotypeQuality
all individuals: 3123
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3024
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GenotypeQuality
all individuals: 2970
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212121212121212e-4
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

FS
type: SiteQuality
SIO_000300: 5.365e0

QD
type: SiteQuality
SIO_000300: 1.529e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.75e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.081012e6

GenotypeQuality
all individuals: 3110
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 3029
bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

South Asian
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num of homozygotes: 0

VQSLOD
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
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FS
type: SiteQuality
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QD
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.305e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
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allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.081957e6

MQRankSum
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QD
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InbreedingCoeff
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FS
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9798
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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DP
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ClippingRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

Other
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num of homozygotes: 0

ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQ
type: SiteQuality
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FS
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DP
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QD
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ClippingRankSum
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MQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.020616452337212e-4
allele num: 9798
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.4e-1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.968e1

MQRankSum
type: SiteQuality
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FS
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ClippingRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66720
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South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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VQSLOD
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FS
type: SiteQuality
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QD
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ClippingRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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South Asian
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Latino
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Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

FS
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DP
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele num: 66726
num of homozygotes: 0

Latino
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

Other
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African
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East Asian
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allele frequency: 2.202643171806168e-3
allele num: 8626
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South Asian
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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MQ
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QD
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FS
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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South Asian
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Latino
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European (Non-Finnish)
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Other
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ReadPosRankSum
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DP
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MQ
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QD
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InbreedingCoeff
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FS
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VQSLOD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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Other
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African
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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Latino
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allele num: 11572
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VQSLOD
type: SiteQuality
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MQRankSum
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FS
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MQ
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.402e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

DP
type: SiteQuality
SIO_000300: 3.086659e6

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3142
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5896
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2961
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1905
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3024
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3079
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.477857639693948e-4
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.354e0

VQSLOD
type: SiteQuality
SIO_000300: 8.66e-1

FS
type: SiteQuality
SIO_000300: 1.133e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.338e0

DP
type: SiteQuality
SIO_000300: 3.087137e6

GenotypeQuality
all individuals: 5904
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1904
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2961
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.332e0

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.386e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

DP
type: SiteQuality
SIO_000300: 3.087074e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.1e0

QD
type: SiteQuality
SIO_000300: 1.386e1