21-38522393-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38522393
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38522393
    reference: chr 21
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.1943A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2134A>G
  hgvsp: ENSP00000403943.1:p.Ile712Val
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2080A>G
  hgvsp: ENSP00000391891.1:p.Ile694Val
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2134A>G
  hgvsp: ENSP00000347889.1:p.Ile712Val
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2134A>G
  hgvsp: ENSP00000408456.1:p.Ile712Val
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1323A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2134A>G
  hgvsp: ENSP00000346791.2:p.Ile712Val
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.225A>G
  hgvsp: ENSP00000414658.1:p.Ile76Val
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2209A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2134A>G
  hgvsp: ENSP00000381981.2:p.Ile712Val
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3516A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1204A>G
  hgvsp: ENSP00000442875.1:p.Ile402Val
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile712Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

21-38522394-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38522394
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38522394
    reference: chr 21
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2135T>C
  hgvsp: ENSP00000347889.1:p.Ile712Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.1944T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2135T>C
  hgvsp: ENSP00000346791.2:p.Ile712Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2135T>C
  hgvsp: ENSP00000408456.1:p.Ile712Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1324T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2081T>C
  hgvsp: ENSP00000391891.1:p.Ile694Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2135T>C
  hgvsp: ENSP00000381981.2:p.Ile712Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3517T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1205T>C
  hgvsp: ENSP00000442875.1:p.Ile402Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2135T>C
  hgvsp: ENSP00000403943.1:p.Ile712Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.226T>C
  hgvsp: ENSP00000414658.1:p.Ile76Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2210T>C
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20981
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15160
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile712Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/21-38522402-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38522402
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38522402
    reference: chr 21
allele count: 4
allele frequency: 3.308081643454961e-5
allele num: 120916
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1332A>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2143A>C
  hgvsp: ENSP00000347889.1:p.Thr715Pro
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2089A>C
  hgvsp: ENSP00000391891.1:p.Thr697Pro
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2143A>C
  hgvsp: ENSP00000381981.2:p.Thr715Pro
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3525A>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2218A>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2143A>C
  hgvsp: ENSP00000408456.1:p.Thr715Pro
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.1952A>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.234A>C
  hgvsp: ENSP00000414658.1:p.Thr79Pro
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2143A>C
  hgvsp: ENSP00000403943.1:p.Thr715Pro
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1213A>C
  hgvsp: ENSP00000442875.1:p.Thr405Pro
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2143A>C
  hgvsp: ENSP00000346791.2:p.Thr715Pro
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8528
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr715Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ

21-38522403-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38522403
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38522403
    reference: chr 21
allele count: 1
allele frequency: 8.269109913008963e-6
allele num: 120932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1214C>T
  hgvsp: ENSP00000442875.1:p.Thr405Ile
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2144C>T
  hgvsp: ENSP00000346791.2:p.Thr715Ile
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2219C>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2144C>T
  hgvsp: ENSP00000408456.1:p.Thr715Ile
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.1953C>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3526C>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2144C>T
  hgvsp: ENSP00000381981.2:p.Thr715Ile
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2144C>T
  hgvsp: ENSP00000347889.1:p.Thr715Ile
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.235C>T
  hgvsp: ENSP00000414658.1:p.Thr79Ile
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1333C>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2144C>T
  hgvsp: ENSP00000403943.1:p.Thr715Ile
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2090C>T
  hgvsp: ENSP00000391891.1:p.Thr697Ile
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21090
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr715Ile
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

21-38522404-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38522404
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38522404
    reference: chr 21
allele count: 1
allele frequency: 8.268562923763849e-6
allele num: 120940
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1334C>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.236C>G
  hgvsp: ENST00000414818.1:c.236C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2145C>G
  hgvsp: ENST00000354749.2:c.2145C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1215C>G
  hgvsp: ENST00000540756.1:c.1215C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2145C>G
  hgvsp: ENST00000450533.1:c.2145C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2145C>G
  hgvsp: ENST00000399017.2:c.2145C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2091C>G
  hgvsp: ENST00000438055.1:c.2091C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.1954C>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2220C>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2145C>G
  hgvsp: ENST00000418766.1:c.2145C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2145C>G
  hgvsp: ENST00000355666.1:c.2145C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3527C>G
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr715Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

21-38522416-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38522416
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38522416
    reference: chr 21
allele count: 3
allele frequency: 2.478724283235561e-5
allele num: 121030
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2157A>G
  hgvsp: ENST00000418766.1:c.2157A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2157A>G
  hgvsp: ENST00000355666.1:c.2157A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3539A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2157A>G
  hgvsp: ENST00000354749.2:c.2157A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2103A>G
  hgvsp: ENST00000438055.1:c.2103A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2157A>G
  hgvsp: ENST00000450533.1:c.2157A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1346A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2232A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.1966A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1227A>G
  hgvsp: ENST00000540756.1:c.1227A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2157A>G
  hgvsp: ENST00000399017.2:c.2157A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.248A>G
  hgvsp: ENST00000414818.1:c.248A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Glu719Glu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

21-38522417-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38522417
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38522417
    reference: chr 21
allele count: 1
allele frequency: 8.262004692818665e-6
allele num: 121036
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2104G>A
  hgvsp: ENSP00000391891.1:p.Gly702Ser
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2158G>A
  hgvsp: ENSP00000408456.1:p.Gly720Ser
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2158G>A
  hgvsp: ENSP00000347889.1:p.Gly720Ser
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2158G>A
  hgvsp: ENSP00000381981.2:p.Gly720Ser
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2158G>A
  hgvsp: ENSP00000403943.1:p.Gly720Ser
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3540G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2158G>A
  hgvsp: ENSP00000346791.2:p.Gly720Ser
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2233G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.249G>A
  hgvsp: ENSP00000414658.1:p.Gly84Ser
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1347G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.1967G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1228G>A
  hgvsp: ENSP00000442875.1:p.Gly410Ser
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly720Ser
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/21-38522440-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38522440
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38522440
    reference: chr 21
allele count: 2
allele frequency: 1.655519502019734e-5
allele num: 120808
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2256C>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2181C>A
  hgvsp: ENST00000399017.2:c.2181C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2127C>A
  hgvsp: ENST00000438055.1:c.2127C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2181C>A
  hgvsp: ENST00000354749.2:c.2181C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.272C>A
  hgvsp: ENST00000414818.1:c.272C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1251C>A
  hgvsp: ENST00000540756.1:c.1251C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3563C>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2181C>A
  hgvsp: ENST00000450533.1:c.2181C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.1990C>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2181C>A
  hgvsp: ENST00000355666.1:c.2181C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2181C>A
  hgvsp: ENST00000418766.1:c.2181C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1370C>A
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile727Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

21-38522443-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38522443
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38522443
    reference: chr 21
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2184C>T
  hgvsp: ENST00000355666.1:c.2184C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2259C>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2184C>T
  hgvsp: ENST00000354749.2:c.2184C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2184C>T
  hgvsp: ENST00000418766.1:c.2184C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.275C>T
  hgvsp: ENST00000414818.1:c.275C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1373C>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2184C>T
  hgvsp: ENST00000399017.2:c.2184C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1254C>T
  hgvsp: ENST00000540756.1:c.1254C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2130C>T
  hgvsp: ENST00000438055.1:c.2130C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3566C>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2184C>T
  hgvsp: ENST00000450533.1:c.2184C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.1993C>T
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe728Phe
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum

21-38522465-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38522465
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38522464
    reference: chr 21
allele count: 1
allele frequency: 8.363861427543869e-6
allele num: 119562
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.298delG
  hgvsp: ENSP00000414658.1:p.Cys100LeufsTer8
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2207delG
  hgvsp: ENSP00000347889.1:p.Cys736LeufsTer8
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3589delG
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2016delG
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2207delG
  hgvsp: ENSP00000346791.2:p.Cys736LeufsTer8
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2207delG
  hgvsp: ENSP00000381981.2:p.Cys736LeufsTer8
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1396delG
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2207delG
  hgvsp: ENSP00000403943.1:p.Cys736LeufsTer8
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2282delG
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2153delG
  hgvsp: ENSP00000391891.1:p.Cys718LeufsTer8
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1277delG
  hgvsp: ENSP00000442875.1:p.Cys426LeufsTer8
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2207delG
  hgvsp: ENSP00000408456.1:p.Cys736LeufsTer8
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys736LeufsTer8
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: TG
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

21-38522478-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38522478
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38522478
    reference: chr 21
allele count: 1
allele frequency: 8.465393471488555e-6
allele num: 118128
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3593+8A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.302+8A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2020+8A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2286+8A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2211+8A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2157+8A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2211+8A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1281+8A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2211+8A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2211+8A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1400+8A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2211+8A>G
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19918
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2211+8A>G
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

21-38522486-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38522486
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38522486
    reference: chr 21
allele count: 5047
allele frequency: 4.304771327681206e-2
allele num: 117242
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2211+16G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2211+16G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2020+16G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2211+16G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1281+16G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1400+16G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2157+16G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2211+16G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3593+16G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2286+16G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.302+16G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2211+16G>T
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 6.25e1
  variant carriers: 179
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 5.25e1
  variant carriers: 453
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 1.75e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 5.75e1
  variant carriers: 335
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 4.25e1
  variant carriers: 552
genotype depth: GenotypeDepth
  all individuals: 18596
  bin: 2.75e1
  variant carriers: 300
genotype depth: GenotypeDepth
  all individuals: 8014
  bin: 3.25e1
  variant carriers: 450
genotype depth: GenotypeDepth
  all individuals: 9320
  bin: 2.25e1
  variant carriers: 210
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 4.75e1
  variant carriers: 542
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 6.75e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 1.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 9.75e1
  variant carriers: 569
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 3.75e1
  variant carriers: 509
genotype quality: GenotypeQuality
num of homozygotes: 419
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ

21-38522490-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38522490
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38522490
    reference: chr 21
allele count: 2
allele frequency: 1.715412985676302e-5
allele num: 116590
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2211+20C>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1400+20C>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2020+20C>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2211+20C>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2211+20C>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2211+20C>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1281+20C>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2286+20C>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.302+20C>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2157+20C>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3593+20C>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2211+20C>G
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6896
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS

21-38522505-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38522505
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38522505
    reference: chr 21
allele count: 1
allele frequency: 8.708829010851202e-6
allele num: 114826
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1281+35A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3593+35A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2286+35A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2211+35A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2211+35A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1400+35A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2020+35A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2211+35A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2211+35A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2211+35A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.302+35A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2157+35A>T
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7935
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10503
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/21-38522508-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38522508
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38522508
    reference: chr 21
allele count: 19
allele frequency: 1.665760726622363e-4
allele num: 114062
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1281+38C>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2211+38C>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2020+38C>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2157+38C>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3593+38C>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2211+38C>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2211+38C>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1400+38C>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2211+38C>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.302+38C>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2211+38C>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2286+38C>A
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5782
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9821
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10485
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5915
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12087
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

21-38522522-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38522522
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38522521
    reference: chr 21
allele count: 3
allele frequency: 2.721730294672667e-5
allele num: 110224
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2211+56delT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2020+56delT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2211+56delT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.302+56delT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2211+56delT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1400+56delT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3593+56delT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2211+56delT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1281+56delT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2211+56delT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2157+56delT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2286+56delT
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11349
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9697
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: CT
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

21-38523070-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523070
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523070
    reference: chr 21
allele count: 6
allele frequency: 5.03989920201596e-5
allele num: 119050
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2212-50A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2287-50A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3594-50A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2021-50A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1282-50A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.303-50A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2212-50A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2212-50A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1401-50A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2158-50A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2212-50A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2212-50A>T
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3281
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12397
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7362
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

21-38523071-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523071
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523071
    reference: chr 21
allele count: 2
allele frequency: 1.678274733573886e-5
allele num: 119170
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1282-49T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2021-49T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2212-49T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2212-49T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2212-49T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2212-49T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1401-49T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3594-49T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2212-49T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.303-49T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2158-49T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2287-49T>C
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9494
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17004
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6982
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

21-38523077-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523077
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523077
    reference: chr 21
allele count: 1
allele frequency: 8.388839487945237e-6
allele num: 119206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2212-43G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2021-43G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3594-43G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.303-43G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1282-43G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2212-43G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2212-43G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2158-43G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2212-43G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1401-43G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2287-43G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2212-43G>T
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15332
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

21-38523081-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523081
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523081
    reference: chr 21
allele count: 9
allele frequency: 7.543121511306301e-5
allele num: 119314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3594-39G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1401-39G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2287-39G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2021-39G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1282-39G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2212-39G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2212-39G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2212-39G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2212-39G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2158-39G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2212-39G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.303-39G>A
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17890
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16499
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

21-38523103-CTTTGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523103
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523098
    reference: chr 21
allele count: 1
allele frequency: 8.316423272678886e-6
allele num: 120244
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2212-13_2212-9delGTTTT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.303-13_303-9delGTTTT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2212-13_2212-9delGTTTT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2212-13_2212-9delGTTTT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2021-13_2021-9delGTTTT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1401-13_1401-9delGTTTT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2158-13_2158-9delGTTTT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3594-13_3594-9delGTTTT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2212-13_2212-9delGTTTT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1282-13_1282-9delGTTTT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2212-13_2212-9delGTTTT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2287-13_2287-9delGTTTT
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: CTTTGT
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

21-38523110-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523110
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523110
    reference: chr 21
allele count: 5
allele frequency: 4.148551325877004e-5
allele num: 120524
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2158-10T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2212-10T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2212-10T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1282-10T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2212-10T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2021-10T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1401-10T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.303-10T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3594-10T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2212-10T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2287-10T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2212-10T>G
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20160
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9883
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

21-38523113-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523113
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523113
    reference: chr 21
allele count: 1
allele frequency: 8.290774026663129e-6
allele num: 120616
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2212-7T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2021-7T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2212-7T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2158-7T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2212-7T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.303-7T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2212-7T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1282-7T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2212-7T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3594-7T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1401-7T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2287-7T>C
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2212-7T>C
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP

21-38523116-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523116
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523116
    reference: chr 21
allele count: 13
allele frequency: 1.077068385557341e-4
allele num: 120698
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2212-4A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2212-4A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3594-4A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2287-4A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2021-4A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2212-4A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2212-4A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2212-4A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1282-4A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2158-4A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.303-4A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1401-4A>G
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20311
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3815
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9899
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2212-4A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD

21-38523122-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523122
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523122
    reference: chr 21
allele count: 1
allele frequency: 8.27841981522567e-6
allele num: 120796
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2214T>G
  hgvsp: ENSP00000347889.1:p.Phe738Leu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1403T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2214T>G
  hgvsp: ENSP00000381981.2:p.Phe738Leu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.305T>G
  hgvsp: ENSP00000414658.1:p.Phe102Leu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3596T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2214T>G
  hgvsp: ENSP00000346791.2:p.Phe738Leu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2214T>G
  hgvsp: ENSP00000408456.1:p.Phe738Leu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1284T>G
  hgvsp: ENSP00000442875.1:p.Phe428Leu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2289T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2023T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2160T>G
  hgvsp: ENSP00000391891.1:p.Phe720Leu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2214T>G
  hgvsp: ENSP00000403943.1:p.Phe738Leu
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe738Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ

21-38523126-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523126
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523126
    reference: chr 21
allele count: 1
allele frequency: 8.273762245168123e-6
allele num: 120864
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.309C>T
  hgvsp: ENSP00000414658.1:p.His104Tyr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2218C>T
  hgvsp: ENSP00000408456.1:p.His740Tyr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2164C>T
  hgvsp: ENSP00000391891.1:p.His722Tyr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1407C>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1288C>T
  hgvsp: ENSP00000442875.1:p.His430Tyr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2218C>T
  hgvsp: ENSP00000381981.2:p.His740Tyr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2218C>T
  hgvsp: ENSP00000346791.2:p.His740Tyr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3600C>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2218C>T
  hgvsp: ENSP00000347889.1:p.His740Tyr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2027C>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2293C>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2218C>T
  hgvsp: ENSP00000403943.1:p.His740Tyr
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His740Tyr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

21-38523140-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523140
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523140
    reference: chr 21
allele count: 1
allele frequency: 8.267332462507647e-6
allele num: 120958
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.323A>G
  hgvsp: ENST00000414818.1:c.323A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2307A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2178A>G
  hgvsp: ENST00000438055.1:c.2178A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3614A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2232A>G
  hgvsp: ENST00000355666.1:c.2232A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1421A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2041A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2232A>G
  hgvsp: ENST00000399017.2:c.2232A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2232A>G
  hgvsp: ENST00000450533.1:c.2232A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2232A>G
  hgvsp: ENST00000418766.1:c.2232A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2232A>G
  hgvsp: ENST00000354749.2:c.2232A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1302A>G
  hgvsp: ENST00000540756.1:c.1302A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9936
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys744Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

21-38523144-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523144
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523144
    reference: chr 21
allele count: 1
allele frequency: 8.266922390132602e-6
allele num: 120964
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2045A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2236A>G
  hgvsp: ENSP00000347889.1:p.Lys746Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2236A>G
  hgvsp: ENSP00000346791.2:p.Lys746Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1425A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2182A>G
  hgvsp: ENSP00000391891.1:p.Lys728Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2236A>G
  hgvsp: ENSP00000403943.1:p.Lys746Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2236A>G
  hgvsp: ENSP00000381981.2:p.Lys746Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1306A>G
  hgvsp: ENSP00000442875.1:p.Lys436Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.327A>G
  hgvsp: ENSP00000414658.1:p.Lys110Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2236A>G
  hgvsp: ENSP00000408456.1:p.Lys746Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2311A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3618A>G
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys746Glu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/21-38523145-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523145
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523145
    reference: chr 21
allele count: 2
allele frequency: 1.653521173338625e-5
allele num: 120954
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2237A>C
  hgvsp: ENSP00000346791.2:p.Lys746Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2237A>C
  hgvsp: ENSP00000403943.1:p.Lys746Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2237A>C
  hgvsp: ENSP00000381981.2:p.Lys746Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2312A>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3619A>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2237A>C
  hgvsp: ENSP00000408456.1:p.Lys746Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1307A>C
  hgvsp: ENSP00000442875.1:p.Lys436Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.328A>C
  hgvsp: ENSP00000414658.1:p.Lys110Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1426A>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2237A>C
  hgvsp: ENSP00000347889.1:p.Lys746Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2046A>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2183A>C
  hgvsp: ENSP00000391891.1:p.Lys728Thr
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9947
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys746Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP

21-38523146-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523146
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523146
    reference: chr 21
allele count: 3
allele frequency: 2.480117722921248e-5
allele num: 120962
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2238G>T
  hgvsp: ENSP00000403943.1:p.Lys746Asn
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2238G>T
  hgvsp: ENSP00000347889.1:p.Lys746Asn
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.329G>T
  hgvsp: ENSP00000414658.1:p.Lys110Asn
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2238G>T
  hgvsp: ENSP00000381981.2:p.Lys746Asn
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1308G>T
  hgvsp: ENSP00000442875.1:p.Lys436Asn
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2238G>T
  hgvsp: ENSP00000408456.1:p.Lys746Asn
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2184G>T
  hgvsp: ENSP00000391891.1:p.Lys728Asn
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3620G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1427G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2047G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2238G>T
  hgvsp: ENSP00000346791.2:p.Lys746Asn
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2313G>T
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys746Asn
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

21-38523149-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523149
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523149
    reference: chr 21
allele count: 1
allele frequency: 8.267195767195768e-6
allele num: 120960
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2241T>A
  hgvsp: ENST00000450533.1:c.2241T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1430T>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2241T>A
  hgvsp: ENST00000399017.2:c.2241T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3623T>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2316T>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2241T>A
  hgvsp: ENST00000355666.1:c.2241T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2187T>A
  hgvsp: ENST00000438055.1:c.2187T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2050T>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1311T>A
  hgvsp: ENST00000540756.1:c.1311T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2241T>A
  hgvsp: ENST00000354749.2:c.2241T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.332T>A
  hgvsp: ENST00000414818.1:c.332T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2241T>A
  hgvsp: ENST00000418766.1:c.2241T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val747Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

21-38523150-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523150
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523150
    reference: chr 21
allele count: 1
allele frequency: 8.267605866693123e-6
allele num: 120954
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1312C>T
  hgvsp: ENSP00000442875.1:p.Pro438Ser
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2317C>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2242C>T
  hgvsp: ENSP00000381981.2:p.Pro748Ser
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3624C>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2242C>T
  hgvsp: ENSP00000347889.1:p.Pro748Ser
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2188C>T
  hgvsp: ENSP00000391891.1:p.Pro730Ser
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.333C>T
  hgvsp: ENSP00000414658.1:p.Pro112Ser
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2242C>T
  hgvsp: ENSP00000346791.2:p.Pro748Ser
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2051C>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2242C>T
  hgvsp: ENSP00000408456.1:p.Pro748Ser
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1431C>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2242C>T
  hgvsp: ENSP00000403943.1:p.Pro748Ser
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3815
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro748Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD

21-38523153-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523153
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523153
    reference: chr 21
allele count: 1
allele frequency: 8.267059076404159e-6
allele num: 120962
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3627C>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2191C>T
  hgvsp: ENSP00000391891.1:p.Pro731Ser
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2245C>T
  hgvsp: ENSP00000403943.1:p.Pro749Ser
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2245C>T
  hgvsp: ENSP00000408456.1:p.Pro749Ser
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.336C>T
  hgvsp: ENSP00000414658.1:p.Pro113Ser
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2245C>T
  hgvsp: ENSP00000346791.2:p.Pro749Ser
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2245C>T
  hgvsp: ENSP00000381981.2:p.Pro749Ser
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1434C>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2054C>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2320C>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1315C>T
  hgvsp: ENSP00000442875.1:p.Pro439Ser
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2245C>T
  hgvsp: ENSP00000347889.1:p.Pro749Ser
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9945
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro749Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ

21-38523158-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523158
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523158
    reference: chr 21
allele count: 7
allele frequency: 5.787994046634695e-5
allele num: 120940
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2250A>G
  hgvsp: ENST00000418766.1:c.2250A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1320A>G
  hgvsp: ENST00000540756.1:c.1320A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2250A>G
  hgvsp: ENST00000450533.1:c.2250A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3632A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2059A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2250A>G
  hgvsp: ENST00000354749.2:c.2250A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.341A>G
  hgvsp: ENST00000414818.1:c.341A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2250A>G
  hgvsp: ENST00000355666.1:c.2250A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2196A>G
  hgvsp: ENST00000438055.1:c.2196A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2325A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2250A>G
  hgvsp: ENST00000399017.2:c.2250A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1439A>G
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19924
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Arg750Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

21-38523160-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523160
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523160
    reference: chr 21
allele count: 1
allele frequency: 8.268562923763849e-6
allele num: 120940
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1322C>G
  hgvsp: ENSP00000442875.1:p.Pro441Arg
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2198C>G
  hgvsp: ENSP00000391891.1:p.Pro733Arg
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1441C>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2252C>G
  hgvsp: ENSP00000408456.1:p.Pro751Arg
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2252C>G
  hgvsp: ENSP00000381981.2:p.Pro751Arg
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2061C>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.343C>G
  hgvsp: ENSP00000414658.1:p.Pro115Arg
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2252C>G
  hgvsp: ENSP00000347889.1:p.Pro751Arg
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3634C>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2327C>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2252C>G
  hgvsp: ENSP00000346791.2:p.Pro751Arg
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2252C>G
  hgvsp: ENSP00000403943.1:p.Pro751Arg
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19929
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro751Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

21-38523162-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523162
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523161
    reference: chr 21
allele count: 1
allele frequency: 8.269793751343841e-6
allele num: 120922
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1445delT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2256delT
  hgvsp: ENSP00000408456.1:p.Leu753Ter
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1326delT
  hgvsp: ENSP00000442875.1:p.Leu443Ter
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2256delT
  hgvsp: ENSP00000403943.1:p.Leu753Ter
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2202delT
  hgvsp: ENSP00000391891.1:p.Leu735Ter
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.347delT
  hgvsp: ENSP00000414658.1:p.Leu117Ter
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2331delT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2256delT
  hgvsp: ENSP00000381981.2:p.Leu753Ter
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2256delT
  hgvsp: ENSP00000346791.2:p.Leu753Ter
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2065delT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3638delT
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2256delT
  hgvsp: ENSP00000347889.1:p.Leu753Ter
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19941
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9951
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu753Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: AT
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

21-38523191-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523191
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523191
    reference: chr 21
allele count: 1
allele frequency: 8.302889405513118e-6
allele num: 120440
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2222+7T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1465+7T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3658+7T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.367+7T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1346+7T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2276+7T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2276+7T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2351+7T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2276+7T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2276+7T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2085+7T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2276+7T>C
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3815
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19071
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2276+7T>C
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

21-38523197-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523197
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523197
    reference: chr 21
allele count: 1
allele frequency: 8.319605983460623e-6
allele num: 120198
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2276+13A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2351+13A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2276+13A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3658+13A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2222+13A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2085+13A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.367+13A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1346+13A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2276+13A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2276+13A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2276+13A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1465+13A>T
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 9914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD

21-38523197-ACAAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523197
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523193
    reference: chr 21
allele count: 3
allele frequency: 2.495881795038187e-5
allele num: 120198
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2222+20_2222+23delATCA
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2276+20_2276+23delATCA
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2085+20_2085+23delATCA
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2276+20_2276+23delATCA
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2276+20_2276+23delATCA
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.367+20_367+23delATCA
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1465+20_1465+23delATCA
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2276+20_2276+23delATCA
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1346+20_1346+23delATCA
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3658+20_3658+23delATCA
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2351+20_2351+23delATCA
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2276+20_2276+23delATCA
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9914
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: ACAAT
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

21-38523200-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523200
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523200
    reference: chr 21
allele count: 6
allele frequency: 4.995171334376769e-5
allele num: 120116
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3658+16A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2276+16A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1465+16A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2351+16A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2276+16A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2085+16A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2276+16A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2276+16A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2222+16A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2276+16A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.367+16A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1346+16A>G
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9896
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

21-38523203-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523203
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523203
    reference: chr 21
allele count: 3
allele frequency: 2.499875006249687e-5
allele num: 120006
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2222+19A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2276+19A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.367+19A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3658+19A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2085+19A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1346+19A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1465+19A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2276+19A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2276+19A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2351+19A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2276+19A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2276+19A>G
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19619
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

21-38523204-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523204
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523204
    reference: chr 21
allele count: 1
allele frequency: 8.336807002917883e-6
allele num: 119950
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2085+20A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3658+20A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2222+20A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.367+20A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2276+20A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2276+20A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1346+20A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1465+20A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2276+20A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2276+20A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2351+20A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2276+20A>G
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

21-38523204-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523204
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523204
    reference: chr 21
allele count: 1
allele frequency: 8.336807002917883e-6
allele num: 119950
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.367+20A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2276+20A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1346+20A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2085+20A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2276+20A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2276+20A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3658+20A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2276+20A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1465+20A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2222+20A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2351+20A>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2276+20A>T
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS

21-38523211-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523211
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523211
    reference: chr 21
allele count: 1
allele frequency: 8.366520531441385e-6
allele num: 119524
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2222+27G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2351+27G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2276+27G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.367+27G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2276+27G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2085+27G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2276+27G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1346+27G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3658+27G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1465+27G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2276+27G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2276+27G>A
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14470
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

21-38523221-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523221
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523221
    reference: chr 21
allele count: 1
allele frequency: 8.402372830087217e-6
allele num: 119014
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3658+37G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2085+37G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1346+37G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2276+37G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2276+37G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2276+37G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1465+37G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2222+37G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2276+37G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2351+37G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2276+37G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.367+37G>A
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5911
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9033
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16129
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

21-38523236-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523236
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38523236
    reference: chr 21
allele count: 1
allele frequency: 8.599043786330961e-6
allele num: 116292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2276+52A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2276+52A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.367+52A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2276+52A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2276+52A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2276+52A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2085+52A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1465+52A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3658+52A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2222+52A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2351+52A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1346+52A>G
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10950
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11735
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

21-38524177-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38524177
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38524177
    reference: chr 21
allele count: 1
allele frequency: 9.182736455463728e-6
allele num: 108900
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2277-16T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2086-16T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1466-16T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2277-16T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1347-16T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.368-16T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2277-16T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2352-16T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3659-16T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2277-16T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2223-16T>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2277-16T>G
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD

21-38524182-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38524182
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38524182
    reference: chr 21
allele count: 1
allele frequency: 9.127085539045672e-6
allele num: 109564
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2086-11A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2277-11A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2277-11A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2277-11A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3659-11A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2277-11A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2223-11A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1347-11A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2277-11A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.368-11A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1466-11A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2352-11A>G
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5530
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

21-38524193-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38524193
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38524193
    reference: chr 21
allele count: 1
allele frequency: 8.966197435667533e-6
allele num: 111530
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2277C>T
  hgvsp: ENST00000450533.1:c.2277C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2277C>T
  hgvsp: ENST00000354749.2:c.2277C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2277C>T
  hgvsp: ENST00000399017.2:c.2277C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2352C>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.368C>T
  hgvsp: ENST00000414818.1:c.368C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2223C>T
  hgvsp: ENST00000438055.1:c.2223C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3659C>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2277C>T
  hgvsp: ENST00000355666.1:c.2277C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2277C>T
  hgvsp: ENST00000418766.1:c.2277C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1347C>T
  hgvsp: ENST00000540756.1:c.1347C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1466C>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2086C>T
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28073
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2277C>T
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

21-38524200-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38524200
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38524200
    reference: chr 21
allele count: 1
allele frequency: 8.791827117511561e-6
allele num: 113742
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2093A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3666A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2284A>G
  hgvsp: ENSP00000408456.1:p.Lys762Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2284A>G
  hgvsp: ENSP00000381981.2:p.Lys762Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2284A>G
  hgvsp: ENSP00000346791.2:p.Lys762Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1354A>G
  hgvsp: ENSP00000442875.1:p.Lys452Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.375A>G
  hgvsp: ENSP00000414658.1:p.Lys126Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1473A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2230A>G
  hgvsp: ENSP00000391891.1:p.Lys744Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2284A>G
  hgvsp: ENSP00000347889.1:p.Lys762Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2284A>G
  hgvsp: ENSP00000403943.1:p.Lys762Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2359A>G
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys762Glu
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

21-38524226-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38524226
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38524226
    reference: chr 21
allele count: 5055
allele frequency: 4.255910284906041e-2
allele num: 118776
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2385A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.401A>G
  hgvsp: ENST00000414818.1:c.401A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2256A>G
  hgvsp: ENST00000438055.1:c.2256A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3692A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2310A>G
  hgvsp: ENST00000399017.2:c.2310A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2310A>G
  hgvsp: ENST00000355666.1:c.2310A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1499A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2310A>G
  hgvsp: ENST00000450533.1:c.2310A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1380A>G
  hgvsp: ENST00000540756.1:c.1380A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2310A>G
  hgvsp: ENST00000418766.1:c.2310A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2119A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2310A>G
  hgvsp: ENST00000354749.2:c.2310A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 4.25e1
  variant carriers: 625
genotype depth: GenotypeDepth
  all individuals: 29620
  bin: 2.25e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.25e1
  variant carriers: 248
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 1.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 5.25e1
  variant carriers: 475
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 3.75e1
  variant carriers: 543
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 4.75e1
  variant carriers: 560
genotype depth: GenotypeDepth
  all individuals: 12089
  bin: 2.75e1
  variant carriers: 294
genotype depth: GenotypeDepth
  all individuals: 6014
  bin: 3.25e1
  variant carriers: 430
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 5.75e1
  variant carriers: 354
genotype quality: GenotypeQuality
hgvs: p.Lys770Lys
num of homozygotes: 419
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

21-38524230-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38524230
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38524230
    reference: chr 21
allele count: 15
allele frequency: 1.257608531616278e-4
allele num: 119274
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1503A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2314A>G
  hgvsp: ENSP00000403943.1:p.Lys772Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2314A>G
  hgvsp: ENSP00000346791.2:p.Lys772Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2123A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.405A>G
  hgvsp: ENSP00000414658.1:p.Lys136Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2389A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2314A>G
  hgvsp: ENSP00000347889.1:p.Lys772Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2314A>G
  hgvsp: ENSP00000381981.2:p.Lys772Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2260A>G
  hgvsp: ENSP00000391891.1:p.Lys754Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1384A>G
  hgvsp: ENSP00000442875.1:p.Lys462Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2314A>G
  hgvsp: ENSP00000408456.1:p.Lys772Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3696A>G
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29783
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6107
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12386
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Lys772Glu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

21-38524233-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38524233
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38524233
    reference: chr 21
allele count: 1
allele frequency: 8.366660531115611e-6
allele num: 119522
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2317A>G
  hgvsp: ENSP00000346791.2:p.Arg773Gly
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1506A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2126A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2317A>G
  hgvsp: ENSP00000381981.2:p.Arg773Gly
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1387A>G
  hgvsp: ENSP00000442875.1:p.Arg463Gly
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2317A>G
  hgvsp: ENSP00000403943.1:p.Arg773Gly
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2263A>G
  hgvsp: ENSP00000391891.1:p.Arg755Gly
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.408A>G
  hgvsp: ENSP00000414658.1:p.Arg137Gly
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2317A>G
  hgvsp: ENSP00000408456.1:p.Arg773Gly
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3699A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2392A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2317A>G
  hgvsp: ENSP00000347889.1:p.Arg773Gly
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg773Gly
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

21-38524238-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38524238
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38524238
    reference: chr 21
allele count: 1
allele frequency: 8.345155637152633e-6
allele num: 119830
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1511G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2397G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3704G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2322G>T
  hgvsp: ENSP00000347889.1:p.Lys774Asn
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2322G>T
  hgvsp: ENSP00000403943.1:p.Lys774Asn
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2131G>T
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2322G>T
  hgvsp: ENSP00000408456.1:p.Lys774Asn
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1392G>T
  hgvsp: ENSP00000442875.1:p.Lys464Asn
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2268G>T
  hgvsp: ENSP00000391891.1:p.Lys756Asn
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.413G>T
  hgvsp: ENSP00000414658.1:p.Lys138Asn
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2322G>T
  hgvsp: ENSP00000346791.2:p.Lys774Asn
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2322G>T
  hgvsp: ENSP00000381981.2:p.Lys774Asn
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6255
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys774Asn
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/21-38524241-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38524241
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38524241
    reference: chr 21
allele count: 1
allele frequency: 8.333055564814507e-6
allele num: 120004
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2325C>A
  hgvsp: ENST00000399017.2:c.2325C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1395C>A
  hgvsp: ENST00000540756.1:c.1395C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2325C>A
  hgvsp: ENST00000355666.1:c.2325C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.416C>A
  hgvsp: ENST00000414818.1:c.416C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2271C>A
  hgvsp: ENST00000438055.1:c.2271C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2325C>A
  hgvsp: ENST00000450533.1:c.2325C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2325C>A
  hgvsp: ENST00000354749.2:c.2325C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2325C>A
  hgvsp: ENST00000418766.1:c.2325C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2134C>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2400C>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3707C>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1514C>A
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile775Ile
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/21-38524242-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38524242
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38524243
    reference: chr 21
allele count: 7
allele frequency: 5.892057506481263e-5
allele num: 118804
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2143dupA
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2409dupA
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3716dupA
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2334dupA
  hgvsp: ENSP00000381981.2:p.Glu779ArgfsTer18
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1404dupA
  hgvsp: ENSP00000442875.1:p.Glu469ArgfsTer18
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.425dupA
  hgvsp: ENSP00000414658.1:p.Glu143ArgfsTer18
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2334dupA
  hgvsp: ENSP00000408456.1:p.Glu779ArgfsTer?
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2334dupA
  hgvsp: ENSP00000346791.2:p.Glu779ArgfsTer18
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1523dupA
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2280dupA
  hgvsp: ENSP00000391891.1:p.Glu761ArgfsTer18
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2334dupA
  hgvsp: ENSP00000347889.1:p.Glu779ArgfsTer18
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2334dupA
  hgvsp: ENSP00000403943.1:p.Glu779ArgfsTer18
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28111
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12414
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6736
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Glu779ArgfsTer18
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/21-38524242-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38524242
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38524241
    reference: chr 21
allele count: 10
allele frequency: 8.417225009258948e-5
allele num: 118804
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2334delA
  hgvsp: ENSP00000381981.2:p.Glu779LysfsTer5
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1404delA
  hgvsp: ENSP00000442875.1:p.Glu469LysfsTer5
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3716delA
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.425delA
  hgvsp: ENSP00000414658.1:p.Glu143LysfsTer5
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2280delA
  hgvsp: ENSP00000391891.1:p.Glu761LysfsTer5
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2143delA
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2334delA
  hgvsp: ENSP00000347889.1:p.Glu779LysfsTer5
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2409delA
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1523delA
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2334delA
  hgvsp: ENSP00000408456.1:p.Glu779LysfsTer?
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2334delA
  hgvsp: ENSP00000403943.1:p.Glu779LysfsTer5
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2334delA
  hgvsp: ENSP00000346791.2:p.Glu779LysfsTer5
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12414
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28111
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6736
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Glu779LysfsTer5
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: CA
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

21-38524244-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38524244
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38524244
    reference: chr 21
allele count: 1
allele frequency: 8.326256015719971e-6
allele num: 120102
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2274A>G
  hgvsp: ENST00000438055.1:c.2274A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2328A>G
  hgvsp: ENST00000450533.1:c.2328A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2403A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2328A>G
  hgvsp: ENST00000355666.1:c.2328A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2328A>G
  hgvsp: ENST00000399017.2:c.2328A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1398A>G
  hgvsp: ENST00000540756.1:c.1398A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.419A>G
  hgvsp: ENST00000414818.1:c.419A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3710A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2137A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2328A>G
  hgvsp: ENST00000418766.1:c.2328A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1517A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2328A>G
  hgvsp: ENST00000354749.2:c.2328A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln776Gln
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP

21-38524254-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38524254
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38524254
    reference: chr 21
allele count: 1
allele frequency: 8.28349430923941e-6
allele num: 120722
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2338G>A
  hgvsp: ENSP00000381981.2:p.Ala780Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2284G>A
  hgvsp: ENSP00000391891.1:p.Ala762Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2338G>A
  hgvsp: ENSP00000347889.1:p.Ala780Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1527G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1408G>A
  hgvsp: ENSP00000442875.1:p.Ala470Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.429G>A
  hgvsp: ENSP00000414658.1:p.Ala144Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2338G>A
  hgvsp: ENSP00000403943.1:p.Ala780Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2338G>A
  hgvsp: ENSP00000346791.2:p.Ala780Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3720G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000408456
  ensembl transcript: ENST00000450533
  gene symbol: TTC3
  hgvsc: ENST00000450533.1:c.2338G>A
  hgvsp: ENSP00000408456.1:p.Ala780Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2413G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2147G>A
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28304
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala780Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

21-38524260-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38524260
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38524260
    reference: chr 21
allele count: 1
allele frequency: 8.274446853227862e-6
allele num: 120854
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1414A>G
  hgvsp: ENSP00000442875.1:p.Lys472Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.435A>G
  hgvsp: ENSP00000414658.1:p.Lys146Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2344A>G
  hgvsp: ENSP00000381981.2:p.Lys782Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3726A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2344A>G
  hgvsp: ENSP00000403943.1:p.Lys782Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2344A>G
  hgvsp: ENSP00000346791.2:p.Lys782Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2290A>G
  hgvsp: ENSP00000391891.1:p.Lys764Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000481605
  gene symbol: TTC3
  hgvsc: ENST00000481605.1:n.1533A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2344A>G
  hgvsp: ENSP00000347889.1:p.Lys782Glu
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2419A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2153A>G
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys782Glu
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

21-38524272-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38524272
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38524272
    reference: chr 21
allele count: 66
allele frequency: 5.456529647144416e-4
allele num: 120956
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2431G>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2356G>C
  hgvsp: ENSP00000381981.2:p.Glu786Gln
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.447G>C
  hgvsp: ENSP00000414658.1:p.Glu150Gln
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1426G>C
  hgvsp: ENSP00000442875.1:p.Glu476Gln
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2356G>C
  hgvsp: ENSP00000347889.1:p.Glu786Gln
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3738G>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2356G>C
  hgvsp: ENSP00000346791.2:p.Glu786Gln
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2302G>C
  hgvsp: ENSP00000391891.1:p.Glu768Gln
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2356G>C
  hgvsp: ENSP00000403943.1:p.Glu786Gln
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2165G>C
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6744
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28360
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 9.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 12720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29968
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu786Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

21-38524279-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38524279
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38524279
    reference: chr 21
allele count: 1
allele frequency: 8.270477702792114e-6
allele num: 120912
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2363T>C
  hgvsp: ENSP00000403943.1:p.Met788Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2363T>C
  hgvsp: ENSP00000381981.2:p.Met788Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2309T>C
  hgvsp: ENSP00000391891.1:p.Met770Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2363T>C
  hgvsp: ENSP00000346791.2:p.Met788Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1433T>C
  hgvsp: ENSP00000442875.1:p.Met478Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.454T>C
  hgvsp: ENSP00000414658.1:p.Met152Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2363T>C
  hgvsp: ENSP00000347889.1:p.Met788Thr
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2438T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3745T>C
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2172T>C
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12738
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29962
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6796
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Met788Thr
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum

21-38524291-TAAGAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38524291
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38524286
    reference: chr 21
allele count: 2
allele frequency: 1.657467720816137e-5
allele num: 120666
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.469_473delGAGAA
  hgvsp: ENSP00000414658.1:p.Arg157LysfsTer2
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2378_2382delGAGAA
  hgvsp: ENSP00000347889.1:p.Arg793LysfsTer2
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2324_2328delGAGAA
  hgvsp: ENSP00000391891.1:p.Arg775LysfsTer2
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2378_2382delGAGAA
  hgvsp: ENSP00000403943.1:p.Arg793LysfsTer2
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2378_2382delGAGAA
  hgvsp: ENSP00000381981.2:p.Arg793LysfsTer2
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2187_2191delGAGAA
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3760_3764delGAGAA
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2378_2382delGAGAA
  hgvsp: ENSP00000346791.2:p.Arg793LysfsTer2
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1448_1452delGAGAA
  hgvsp: ENSP00000442875.1:p.Arg483LysfsTer2
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2453_2457delGAGAA
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12706
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg793LysfsTer2
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: TAAGAG
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP

21-38524294-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38524294
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38524294
    reference: chr 21
allele count: 1
allele frequency: 8.287063893262618e-6
allele num: 120670
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2324G>A
  hgvsp: ENSP00000391891.1:p.Arg775Lys
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3760G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2378G>A
  hgvsp: ENSP00000347889.1:p.Arg793Lys
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2378G>A
  hgvsp: ENSP00000346791.2:p.Arg793Lys
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1448G>A
  hgvsp: ENSP00000442875.1:p.Arg483Lys
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2378G>A
  hgvsp: ENSP00000381981.2:p.Arg793Lys
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.469G>A
  hgvsp: ENSP00000414658.1:p.Arg157Lys
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2378G>A
  hgvsp: ENSP00000403943.1:p.Arg793Lys
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2453G>A
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2187G>A
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg793Lys
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

21-38524295-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38524295
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38524295
    reference: chr 21
allele count: 2
allele frequency: 1.657715005636231e-5
allele num: 120648
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2379A>G
  hgvsp: ENST00000418766.1:c.2379A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2379A>G
  hgvsp: ENST00000354749.2:c.2379A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3761A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2379A>G
  hgvsp: ENST00000355666.1:c.2379A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.470A>G
  hgvsp: ENST00000414818.1:c.470A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2379A>G
  hgvsp: ENST00000399017.2:c.2379A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1449A>G
  hgvsp: ENST00000540756.1:c.1449A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2454A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2188A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2325A>G
  hgvsp: ENST00000438055.1:c.2325A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10053
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Arg793Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

21-38524299-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38524299
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38524299
    reference: chr 21
allele count: 1
allele frequency: 8.29985724245543e-6
allele num: 120484
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2383A>G
  hgvsp: ENSP00000347889.1:p.Ser795Gly
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2383A>G
  hgvsp: ENSP00000403943.1:p.Ser795Gly
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3765A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2383A>G
  hgvsp: ENSP00000381981.2:p.Ser795Gly
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1453A>G
  hgvsp: ENSP00000442875.1:p.Ser485Gly
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2329A>G
  hgvsp: ENSP00000391891.1:p.Ser777Gly
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2383A>G
  hgvsp: ENSP00000346791.2:p.Ser795Gly
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.474A>G
  hgvsp: ENSP00000414658.1:p.Ser159Gly
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2458A>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2192A>G
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6732
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser795Gly
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum

21-38524305-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38524305
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 38524305
    reference: chr 21
allele count: 3
allele frequency: 2.496671105193076e-5
allele num: 120160
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000346791
  ensembl transcript: ENST00000354749
  gene symbol: TTC3
  hgvsc: ENST00000354749.2:c.2389C>G
  hgvsp: ENSP00000346791.2:p.Pro797Ala
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000414658
  ensembl transcript: ENST00000414818
  gene symbol: TTC3
  hgvsc: ENST00000414818.1:c.480C>G
  hgvsp: ENSP00000414658.1:p.Pro161Ala
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000476784
  gene symbol: TTC3
  hgvsc: ENST00000476784.1:n.2198C>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000347889
  ensembl transcript: ENST00000355666
  gene symbol: TTC3
  hgvsc: ENST00000355666.1:c.2389C>G
  hgvsp: ENSP00000347889.1:p.Pro797Ala
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000391891
  ensembl transcript: ENST00000438055
  gene symbol: TTC3
  hgvsc: ENST00000438055.1:c.2335C>G
  hgvsp: ENSP00000391891.1:p.Pro779Ala
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000479930
  gene symbol: TTC3
  hgvsc: ENST00000479930.1:n.3771C>G
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000403943
  ensembl transcript: ENST00000418766
  gene symbol: TTC3
  hgvsc: ENST00000418766.1:c.2389C>G
  hgvsp: ENSP00000403943.1:p.Pro797Ala
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000381981
  ensembl transcript: ENST00000399017
  gene symbol: TTC3
  hgvsc: ENST00000399017.2:c.2389C>G
  hgvsp: ENSP00000381981.2:p.Pro797Ala
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182670
  ensembl protein: ENSP00000442875
  ensembl transcript: ENST00000540756
  gene symbol: TTC3
  hgvsc: ENST00000540756.1:c.1459C>G
  hgvsp: ENSP00000442875.1:p.Pro487Ala
  variant of: http://identifiers.org/hgnc/12393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182670
  ensembl transcript: ENST00000485402
  gene symbol: TTC3
  hgvsc: ENST00000485402.1:n.2464C>G
  variant of: http://identifiers.org/hgnc/12393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6698
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro797Ala
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C

GenotypeDepth
all individuals: 144
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2305
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 291
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1330
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9044
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 102
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6576
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35354
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2433
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2249
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1809
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507704369327262e-5
allele num: 66326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.093e1

FS
type: SiteQuality
SIO_000300: 4.835e0

DP
type: SiteQuality
SIO_000300: 2.077867e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.07e-2

MQ
type: SiteQuality
SIO_000300: 5.747e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.18e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.15e0

VQSLOD
type: SiteQuality
SIO_000300: -3.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.870000000000001e-1

GenotypeDepth
all individuals: 153
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 144
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 228
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35394
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2250
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9044
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6584
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2435
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1329
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1805
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507249871883761e-5
allele num: 66346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.596e1

QD
type: SiteQuality
SIO_000300: 1.004e1

VQSLOD
type: SiteQuality
SIO_000300: -1.779e0

FS
type: SiteQuality
SIO_000300: 3.471e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

DP
type: SiteQuality
SIO_000300: 2.07832e6

MQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.54e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.168e0

GenotypeDepth
all individuals: 144
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2184
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 671
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1040
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1807
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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European (Non-Finnish)
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Other
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Latino
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South Asian
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East Asian
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QD
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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InbreedingCoeff
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BaseQRankSum
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DP
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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DP
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQ
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FS
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MQRankSum
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QD
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Other
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East Asian
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Latino
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South Asian
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European (Finnish)
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VQSLOD
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FS
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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MQ
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DP
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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East Asian
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South Asian
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Other
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European (Non-Finnish)
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African
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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FS
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MQRankSum
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DP
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Latino
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East Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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South Asian
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FS
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MQ
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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DP
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MQRankSum
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QD
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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Other
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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DP
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FS
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InbreedingCoeff
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VQSLOD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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QD
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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Latino
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Other
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European (Non-Finnish)
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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QD
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FS
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.529987760097919e-5
allele num: 65360
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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SIO_000300: 1.58e-1

BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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FS
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MQ
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SIO_000300: 5.828e1

DP
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ReadPosRankSum
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SIO_000300: -1.863e0

QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.557535356052582e-5
allele num: 64204
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.01828e6

BaseQRankSum
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SIO_000300: 5.47e0

ClippingRankSum
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SIO_000300: 1.28e0

ReadPosRankSum
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MQ
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SIO_000300: 5.8e1

MQRankSum
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QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 4.035e0

VQSLOD
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SIO_000300: -3.331e0

GenotypeDepth
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variant carriers: 50

GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 16

Other
type: Population
allele count: 15
allele frequency: 1.681614349775785e-2
allele num: 892
num of homozygotes: 0

South Asian
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allele count: 540
allele frequency: 3.344895936570862e-2
allele num: 16144
num of homozygotes: 12

East Asian
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allele count: 304
allele frequency: 3.587443946188341e-2
allele num: 8474
num of homozygotes: 7

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Latino
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allele count: 1753
allele frequency: 1.54286217215279e-1
allele num: 11362
num of homozygotes: 145

African
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allele count: 2296
allele frequency: 2.236508864211962e-1
allele num: 10266
num of homozygotes: 254

European (Non-Finnish)
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allele count: 139
allele frequency: 2.186428414131563e-3
allele num: 63574
num of homozygotes: 1

InbreedingCoeff
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SIO_000300: 1.324e-1

BaseQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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QD
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ClippingRankSum
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SIO_000300: -1.62e-1

DP
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SIO_000300: 2.054809e6

MQRankSum
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SIO_000300: 3.37e-1

MQ
type: SiteQuality
SIO_000300: 5.829e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.165959602355474e-5
allele num: 63172
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
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allele count: 0
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QD
type: SiteQuality
SIO_000300: 2.282e1

DP
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SIO_000300: 1.928174e6

MQRankSum
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SIO_000300: 4.65e-1

ReadPosRankSum
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VQSLOD
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BaseQRankSum
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SIO_000300: -1.953e0

ClippingRankSum
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SIO_000300: 1.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQ
type: SiteQuality
SIO_000300: 5.559e1

FS
type: SiteQuality
SIO_000300: 1.368e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8276
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.614465611882467e-5
allele num: 61940
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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VQSLOD
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MQ
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FS
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BaseQRankSum
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InbreedingCoeff
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DP
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15882
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11118
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
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East Asian
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allele count: 19
allele frequency: 2.311435523114355e-3
allele num: 8220
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61410
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MQRankSum
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SIO_000300: 4.6e-1

VQSLOD
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QD
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ReadPosRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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MQ
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SIO_000300: 5.829e1

DP
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ClippingRankSum
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SIO_000300: 5.25e-1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1274
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variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.155832265152902e-5
allele num: 10922
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15626
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 58584
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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East Asian
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Other
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FS
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DP
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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VQSLOD
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 9.18105031215571e-5
allele num: 65352
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European (Finnish)
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allele frequency: 0.0e0
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African
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MQRankSum
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MQ
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ClippingRankSum
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DP
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VQSLOD
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BaseQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele num: 11378
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.527930570834861e-5
allele num: 65448
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Other
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African
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South Asian
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East Asian
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FS
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BaseQRankSum
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MQRankSum
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DP
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VQSLOD
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ReadPosRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Latino
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allele num: 11386
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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VQSLOD
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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QD
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MQ
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ReadPosRankSum
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FS
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65528
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African
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Latino
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East Asian
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Other
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South Asian
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BaseQRankSum
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SIO_000300: -3.128e0

VQSLOD
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DP
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InbreedingCoeff
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QD
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MQ
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ClippingRankSum
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MQRankSum
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FS
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.512950859356088e-5
allele num: 66096
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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FS
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DP
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MQ
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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African
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European (Non-Finnish)
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allele num: 66280
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East Asian
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Other
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MQ
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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DP
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QD
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MQRankSum
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FS
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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African
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Latino
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MQRankSum
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ReadPosRankSum
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QD
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InbreedingCoeff
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MQ
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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FS
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 13

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.012864933265042e-5
allele num: 66382
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

South Asian
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allele count: 10
allele frequency: 6.072382803011902e-4
allele num: 16468
num of homozygotes: 0

Other
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allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.772e0

VQSLOD
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SIO_000300: 2.08e-1

ReadPosRankSum
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SIO_000300: 1.2e-2

ClippingRankSum
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SIO_000300: 4.3e-2

InbreedingCoeff
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SIO_000300: 3.26e-2

MQRankSum
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SIO_000300: -5.72e-1

MQ
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SIO_000300: 5.968e1

BaseQRankSum
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SIO_000300: 2.75e0

DP
type: SiteQuality
SIO_000300: 1.858702e6

QD
type: SiteQuality
SIO_000300: 1.404e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.692628650904033e-5
allele num: 11504
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66444
num of homozygotes: 0

FS
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SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: 8.22e-1

ReadPosRankSum
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DP
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MQRankSum
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VQSLOD
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SIO_000300: -5.582e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

BaseQRankSum
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SIO_000300: 2.74e0

QD
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SIO_000300: 7.71e0

MQ
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SIO_000300: 5.948e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.069434328720563e-5
allele num: 16476
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66492
num of homozygotes: 0

ClippingRankSum
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SIO_000300: -4.18e-1

MQRankSum
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SIO_000300: 1.25e0

FS
type: SiteQuality
SIO_000300: 8.21e-1

VQSLOD
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SIO_000300: -7.014e-1

QD
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SIO_000300: 9.52e0

DP
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SIO_000300: 1.86112e6

BaseQRankSum
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SIO_000300: -2.142e0

MQ
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SIO_000300: 5.893e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 1
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allele num: 16484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.86301e6

InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
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QD
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SIO_000300: 1.259e1

FS
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SIO_000300: 6.685e0

ReadPosRankSum
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SIO_000300: 1.8e0

MQRankSum
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SIO_000300: 1.76e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.548e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5416
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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BaseQRankSum
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SIO_000300: 4.76e0

InbreedingCoeff
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FS
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SIO_000300: 4.054e0

MQRankSum
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VQSLOD
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DP
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QD
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SIO_000300: 1.38e1

MQ
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SIO_000300: 5.983e1

ReadPosRankSum
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ClippingRankSum
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SIO_000300: -6.7e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Latino
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allele count: 2
allele frequency: 1.736714136853074e-4
allele num: 11516
num of homozygotes: 0

European (Non-Finnish)
type: Population
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allele frequency: 0.0e0
allele num: 66544
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

VQSLOD
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MQ
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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FS
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QD
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DP
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 2.605071205279611e-4
allele num: 11516
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

Other
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East Asian
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South Asian
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MQ
type: SiteQuality
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FS
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQRankSum
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QD
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DP
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66542
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.725734292939116e-5
allele num: 10282
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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InbreedingCoeff
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DP
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQRankSum
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MQ
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FS
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
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East Asian
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European (Non-Finnish)
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Latino
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African
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South Asian
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ClippingRankSum
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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QD
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SIO_000300: 1.145e1

MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

South Asian
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African
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East Asian
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 5.021e0

VQSLOD
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ClippingRankSum
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MQ
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BaseQRankSum
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QD
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MQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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African
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Latino
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South Asian
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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QD
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FS
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VQSLOD
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DP
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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East Asian
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Other
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Latino
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African
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European (Finnish)
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MQ
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FS
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MQRankSum
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VQSLOD
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QD
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DP
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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South Asian
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African
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European (Non-Finnish)
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Latino
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Other
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MQRankSum
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DP
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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ClippingRankSum
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InbreedingCoeff
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MQ
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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Latino
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East Asian
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Other
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DP
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ClippingRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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MQRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66096
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Other
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African
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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FS
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DP
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MQ
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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African
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East Asian
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South Asian
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European (Non-Finnish)
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allele num: 66022
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Latino
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Other
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MQ
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DP
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QD
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ClippingRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.548762736535663e-5
allele num: 65952
num of homozygotes: 1

South Asian
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African
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Other
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Latino
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East Asian
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European (Finnish)
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FS
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ClippingRankSum
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DP
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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MQ
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QD
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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Latino
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African
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South Asian
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East Asian
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ClippingRankSum
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ReadPosRankSum
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FS
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DP
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QD
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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Latino
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East Asian
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African
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South Asian
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European (Non-Finnish)
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QD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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FS
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Finnish)
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European (Non-Finnish)
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East Asian
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Other
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African
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South Asian
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DP
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ReadPosRankSum
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InbreedingCoeff
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QD
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FS
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MQ
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MQRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5382
bin: 9.75e1
variant carriers: 1

African
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allele count: 1
allele frequency: 9.994003597841295e-5
allele num: 10006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65364
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

MQ
type: SiteQuality
SIO_000300: 5.936e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

QD
type: SiteQuality
SIO_000300: 1.205e1

DP
type: SiteQuality
SIO_000300: 1.72333e6

MQRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

GenotypeDepth
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.57153633392004e-5
allele num: 63632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9696
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16164
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -9.538e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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SIO_000300: 1.798e1

DP
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SIO_000300: 1.650549e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.98e0

MQRankSum
type: SiteQuality
SIO_000300: -9.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.766e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

GenotypeDepth
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bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5379
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11138
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7984
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.628081143564195e-5
allele num: 61422
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.47e-1

MQRankSum
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SIO_000300: 1.28e-1

InbreedingCoeff
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SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e0

QD
type: SiteQuality
SIO_000300: 1.394e1

FS
type: SiteQuality
SIO_000300: 6.471e0

DP
type: SiteQuality
SIO_000300: 1.604258e6

VQSLOD
type: SiteQuality
SIO_000300: -1.102e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1607
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.619380748801658e-5
allele num: 61752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11168
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8016
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.624237e6

QD
type: SiteQuality
SIO_000300: 1.883e1

MQ
type: SiteQuality
SIO_000300: 5.849e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.859e0

FS
type: SiteQuality
SIO_000300: 2.387e0

MQRankSum
type: SiteQuality
SIO_000300: 2.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e0

VQSLOD
type: SiteQuality
SIO_000300: -3.666e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.76e0

GenotypeDepth
all individuals: 128
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 161
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variant carriers: 0

GenotypeDepth
all individuals: 1002
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variant carriers: 0

GenotypeDepth
all individuals: 1821
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
all individuals: 3271
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variant carriers: 0

GenotypeQuality
all individuals: 68
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GenotypeQuality
all individuals: 1162
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 224
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1225
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 416
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GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
all individuals: 2305
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GenotypeQuality
all individuals: 988
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variant carriers: 0

GenotypeQuality
all individuals: 2619
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GenotypeQuality
all individuals: 26500
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.596780889726312e-5
allele num: 62626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8056
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e0

DP
type: SiteQuality
SIO_000300: 1.674116e6

MQRankSum
type: SiteQuality
SIO_000300: 3.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -1.901e0

FS
type: SiteQuality
SIO_000300: 2.779e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e0

VQSLOD
type: SiteQuality
SIO_000300: -9.784e-1

QD
type: SiteQuality
SIO_000300: 7.21e0

GenotypeDepth
all individuals: 148
bin: 7.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 25
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6531
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 376
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8106
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.818342151675486e-5
allele num: 11340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63584
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.707612e6

FS
type: SiteQuality
SIO_000300: 3.37e0

QD
type: SiteQuality
SIO_000300: 1.681e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.16e0

MQRankSum
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SIO_000300: -5.629999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.26e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.126e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-1

GenotypeDepth
all individuals: 1864
bin: 9.75e1
variant carriers: 364

GenotypeDepth
all individuals: 159
bin: 8.25e1
variant carriers: 46

GenotypeDepth
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variant carriers: 32

GenotypeQuality
all individuals: 6222
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variant carriers: 10

GenotypeQuality
all individuals: 70
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GenotypeQuality
all individuals: 218
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GenotypeQuality
all individuals: 1074
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variant carriers: 11

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 284
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 340
bin: 3.25e1
variant carriers: 4

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 1340
bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 5

GenotypeQuality
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bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 10566
bin: 9.75e1
variant carriers: 4542

GenotypeQuality
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bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 14

GenotypeQuality
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bin: 7.75e1
variant carriers: 9

GenotypeQuality
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GenotypeQuality
all individuals: 248
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variant carriers: 7

GenotypeQuality
all individuals: 2536
bin: 8.25e1
variant carriers: 16

GenotypeQuality
all individuals: 261
bin: 5.25e1
variant carriers: 6

East Asian
type: Population
allele count: 301
allele frequency: 3.647600581677169e-2
allele num: 8252
num of homozygotes: 6

Other
type: Population
allele count: 15
allele frequency: 1.666666666666667e-2
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 138
allele frequency: 2.10642000183167e-3
allele num: 65514
num of homozygotes: 1

Latino
type: Population
allele count: 1756
allele frequency: 1.530416594038696e-1
allele num: 11474
num of homozygotes: 146

South Asian
type: Population
allele count: 542
allele frequency: 3.429077565481463e-2
allele num: 15806
num of homozygotes: 12

African
type: Population
allele count: 2303
allele frequency: 2.252102483864659e-1
allele num: 10226
num of homozygotes: 254

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-1

FS
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SIO_000300: 0.0e0

ClippingRankSum
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InbreedingCoeff
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SIO_000300: 1.324e-1

DP
type: SiteQuality
SIO_000300: 1.902995e6

QD
type: SiteQuality
SIO_000300: 1.787e1

VQSLOD
type: SiteQuality
SIO_000300: 5.28e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.32e-1

BaseQRankSum
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SIO_000300: 3.31e0

GenotypeDepth
all individuals: 497
bin: 6.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 232
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GenotypeQuality
all individuals: 1424
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GenotypeQuality
all individuals: 9078
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 178
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8300
num of homozygotes: 0

European (Non-Finnish)
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allele count: 14
allele frequency: 2.129990262901655e-4
allele num: 65728
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.75609756097561e-5
allele num: 10250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.46e-1

MQRankSum
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MQ
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SIO_000300: 5.89e1

BaseQRankSum
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SIO_000300: 2.55e0

ReadPosRankSum
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SIO_000300: 2.16e-1

FS
type: SiteQuality
SIO_000300: 3.469e0

ClippingRankSum
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SIO_000300: 8.799999999999999e-2

InbreedingCoeff
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SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.358e1

DP
type: SiteQuality
SIO_000300: 1.884144e6

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16058
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.518649009840846e-5
allele num: 65848
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.877e1

MQRankSum
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DP
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SIO_000300: 1.888625e6

ReadPosRankSum
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InbreedingCoeff
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SIO_000300: 0.0e0

BaseQRankSum
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ClippingRankSum
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VQSLOD
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FS
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SIO_000300: 3.702e0

QD
type: SiteQuality
SIO_000300: 1.44e1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 1
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65988
num of homozygotes: 0

Latino
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MQRankSum
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SIO_000300: -4.37e-1

ReadPosRankSum
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QD
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SIO_000300: 1.607e1

ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: 5.0e-4

FS
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SIO_000300: 0.0e0

DP
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SIO_000300: 1.894894e6

VQSLOD
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SIO_000300: 6.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 30970
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 1
allele frequency: 1.19019281123542e-4
allele num: 8402
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66066
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
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MQRankSum
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SIO_000300: -4.6e-1

BaseQRankSum
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MQ
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SIO_000300: 5.969e1

VQSLOD
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SIO_000300: 5.73e-1

QD
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SIO_000300: 9.77e0

ReadPosRankSum
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SIO_000300: 9.69e-1

FS
type: SiteQuality
SIO_000300: 1.081e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.45e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.881821603312006e-4
allele num: 15942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.583091447951358e-5
allele num: 65458
num of homozygotes: 0

East Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 9.809691975671964e-5
allele num: 10194
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VQSLOD
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MQ
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BaseQRankSum
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ReadPosRankSum
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FS
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MQRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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QD
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.509095471082675e-4
allele num: 15942
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 9.166182895902716e-5
allele num: 65458
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 888
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8306
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
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MQRankSum
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SIO_000300: 1.08e-1

QD
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BaseQRankSum
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FS
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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DP
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InbreedingCoeff
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MQ
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SIO_000300: 5.925e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.18595825426945e-4
allele num: 8432
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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FS
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ReadPosRankSum
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QD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506341698550899e-5
allele num: 66386
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
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MQ
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VQSLOD
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ClippingRankSum
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QD
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BaseQRankSum
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MQRankSum
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SIO_000300: -1.614e0

FS
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DP
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SIO_000300: 1.959137e6

ReadPosRankSum
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SIO_000300: 4.47e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 9.68429207824908e-5
allele num: 10326
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66458
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
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SIO_000300: 0.0e0

ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -2.0e-4

VQSLOD
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SIO_000300: 1.11e0

BaseQRankSum
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SIO_000300: 4.47e0

MQRankSum
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SIO_000300: -6.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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SIO_000300: 1.961145e6

ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.834862385321101e-4
allele num: 16350
num of homozygotes: 0

European (Non-Finnish)
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allele count: 53
allele frequency: 7.965133754132852e-4
allele num: 66540
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 5
allele frequency: 4.32152117545376e-4
allele num: 11570
num of homozygotes: 0

African
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allele frequency: 2.901915264074289e-4
allele num: 10338
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.207505518763797e-3
allele num: 906
num of homozygotes: 0

MQ
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SIO_000300: 5.954e1

InbreedingCoeff
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SIO_000300: -9.0e-4

QD
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FS
type: SiteQuality
SIO_000300: 1.288e0

BaseQRankSum
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VQSLOD
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MQRankSum
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SIO_000300: 5.22e-1

ReadPosRankSum
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SIO_000300: 5.46e-1

ClippingRankSum
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SIO_000300: -3.15e-1

DP
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SIO_000300: 1.96713e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502900598154438e-5
allele num: 66538
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MQ
type: SiteQuality
SIO_000300: 5.952e1

MQRankSum
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SIO_000300: 1.39e-1

InbreedingCoeff
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SIO_000300: -3.0e-4

ReadPosRankSum
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ClippingRankSum
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DP
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VQSLOD
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QD
type: SiteQuality
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FS
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 2.9e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 2
allele frequency: 1.239925604463732e-4
allele num: 16130
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: 1.43e0

MQRankSum
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FS
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ClippingRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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QD
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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Latino
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allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
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QD
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FS
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DP
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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African
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Other
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.009510051763573e-5
allele num: 66456
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Latino
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South Asian
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QD
type: SiteQuality
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ClippingRankSum
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VQSLOD
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MQ
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DP
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InbreedingCoeff
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BaseQRankSum
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FS
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.505661286437003e-5
allele num: 66416
num of homozygotes: 0

Latino
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Other
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.326e1

MQRankSum
type: SiteQuality
SIO_000300: 6.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.41e0

DP
type: SiteQuality
SIO_000300: 1.959281e6

MQ
type: SiteQuality
SIO_000300: 5.987e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28975
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1455
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3026
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3896
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1681
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3107
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10058
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.523249502442555e-5
allele num: 66324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0